CuGenDBv2

Gene ID	Sed0024250
Organism	Sechium edule (Chayote v1)
Description	UBA domain-containing protein
Genome location	LG05:2916814..2919435
RNA-Seq Expression	Sed0024250
Synteny	Sed0024250
Gene Ontology terms	GO:0043162 - ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway (biological process) GO:0000813 - ESCRT I complex (cellular component) GO:0043130 - ubiquitin binding (molecular function)
InterPro domains	IPR009060 - UBA-like superfamily IPR015940 - Ubiquitin-associated domain IPR038870 - Ubiquitin-associated protein 1 IPR042575 - Ubiquitin-associated protein 1, C-terminal

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6605766.1 Ubiquitin-conjugating enzyme E2 10, partial [Cucurbita argyrosperma subsp. sororia]

2.5e-99

84.96

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Query:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP
        MAYDYRNKPG+       YG  ASSSPSPSIHPMY Q MYPRIGQQGHSPA  PPVARVSSHHHSSSA     SPSSSGLG+RVT+KP++RITPPPQL P
Subjt:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP

Query:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF
        QVGDIPRSNFQFDFEFEKKVLAEAEKETPNW+RFGLEHPP +PVES+SSMGS G+PVVSKYVASGLSREAVS AVANYGDNPTKVQEFVKGY LLREMGF
Subjt:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF

Query:  SSNKVVEALLMYDNDTDKAVTHFLGG
         SNKVVEALLMYDNDTDKAV HFLGG
Subjt:  SSNKVVEALLMYDNDTDKAVTHFLGG

KAG7035731.1 hypothetical protein SDJN02_02529 [Cucurbita argyrosperma subsp. argyrosperma]

2.3e-100

85.09

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Query:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP
        MAYDYRNKPG+       YG  ASSSPSPSIHPMY Q MYPRIGQQGHSPA  PPVARVSSHHHSSSA     SPSSSGLG+RVT+KP++RITPPPQL P
Subjt:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP

Query:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF
        QVGDIPRSNFQFDFEFEKKVLAEAEKETPNW+RFGLEHPP +PVES+SSMGS G+PVVSKYVASGLSREAVS AVANYGDNPTKVQEFVKGY LLREMGF
Subjt:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF

Query:  SSNKVVEALLMYDNDTDKAVTHFLGGTS
         SNKVVEALLMYDNDTDKAV HFLGGTS
Subjt:  SSNKVVEALLMYDNDTDKAVTHFLGGTS

XP_022958203.1 uncharacterized protein LOC111459499 [Cucurbita moschata]

2.3e-100

85.09

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Query:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP
        MAYDYRNKPG+       YG  ASSSPSPSIHPMY Q MYPRIGQQGHSPA  PPVARVSSHHHSSSA     SPSSSGLG+RVT+KP++RITPPPQL P
Subjt:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP

Query:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF
        QVGDIPRSNFQFDFEFEKKVLAEAEKETPNW+RFGLEHPP +PVES+SSMGS G+PVVSKYVASGLSREAVS AVANYGDNPTKVQEFVKGY LLREMGF
Subjt:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF

Query:  SSNKVVEALLMYDNDTDKAVTHFLGGTS
         SNKVVEALLMYDNDTDKAV HFLGGTS
Subjt:  SSNKVVEALLMYDNDTDKAVTHFLGGTS

XP_022995350.1 velvet complex subunit B [Cucurbita maxima]

3.3e-99

84.21

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Query:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP
        MAYDYRNKPG+       YG  ASSSPSPSIHPMY Q MYPRIGQQGHSPAPP P  RVSSHHHSSSA     SPSSSGLG+RVT+KP++RITPPPQL P
Subjt:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP

Query:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF
        QVGDIPRSNFQFDFEFEKKVLAEAEKETPNW+RFGLEHPP +PVES+SSMGS G+PVV+KYVASGLSREAVS AVANYGDNPTKVQEFVKGY LLREMGF
Subjt:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF

Query:  SSNKVVEALLMYDNDTDKAVTHFLGGTS
         SNKVVEALLMYDNDTDKAV HFLGGTS
Subjt:  SSNKVVEALLMYDNDTDKAVTHFLGGTS

XP_023534738.1 uncharacterized protein LOC111796216 [Cucurbita pepo subsp. pepo]

5.1e-100

84.65

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Query:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP
        MAYDYRNKPG+       YG  ASSSPSPSIHPMY Q MYPRIGQQGHSPA  PPVARVSSHHHSSSA     SPSSSGLG+RVT+KP++RITPPPQL P
Subjt:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP

Query:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF
        QVGDIPRSNFQFDFEFEKKVLAEAEKETPNW+RFGLEHPP +PVES+SSMGS G+PVV+KYVASGLSREAVS AVANYGDNPTKVQEFVKGY LLREMGF
Subjt:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF

Query:  SSNKVVEALLMYDNDTDKAVTHFLGGTS
         SNKVVEALLMYDNDTDKAV HFLGGTS
Subjt:  SSNKVVEALLMYDNDTDKAVTHFLGGTS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KNB8 Uncharacterized protein

4.5e-94

81.42

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Query:  MAYDYRNKPGHYG--QP-----ASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSASP---SSSGLGVRVTVKPDFRITPPPQLLPQV
        MAYD+RN  GHY   QP     ASSSPSPS HPMY+  MYPRIGQQ  +P+  PPVAR+SSHH+SSS SP   SSSGLG+RVT+KP++RITPPPQL PQV
Subjt:  MAYDYRNKPGHYG--QP-----ASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSASP---SSSGLGVRVTVKPDFRITPPPQLLPQV

Query:  GDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGFSS
        GDIPRSNFQFDFEFEKKVLAEAEKE PNW+RFGLEHPPPKPVES SSMGS+G+PVVSKYVASGL+REAVS AVANYGDNPTKVQEFVKGY LLREMGFSS
Subjt:  GDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGFSS

Query:  NKVVEALLMYDNDTDKAVTHFLGGTS
         KVVEALLMYDNDTDKAV HFLGGTS
Subjt:  NKVVEALLMYDNDTDKAVTHFLGGTS

A0A1S3AUY5 uncharacterized protein LOC103482940 isoform X3

3.5e-91

79.46

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Query:  MAYDYRNKPGH------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSS--SASPSSSGLGVRVTVKPDFRITPPPQLLPQVGD
        MAYD+RN  GH      Y   ASS+PSPS HPMY+Q MYPRIGQQ  +P+  PPVAR+SSHHHSS  S+SPSSS LG+RVT+KP++RITPPPQL PQVGD
Subjt:  MAYDYRNKPGH------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSS--SASPSSSGLGVRVTVKPDFRITPPPQLLPQVGD

Query:  IPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGFSSNK
        IPRSNF FDFEFEKKVLAEAEKE PNW+RFGLE  PPKPVES SSMGS+G+P VSKYVASGL+REAVS AVANYGDNPTKVQEFVKGY LLREMGFSS K
Subjt:  IPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGFSSNK

Query:  VVEALLMYDNDTDKAVTHFLGGTS
        VVEALLMYDNDTDKAV HFLGGTS
Subjt:  VVEALLMYDNDTDKAVTHFLGGTS

A0A6J1DVL2 uncharacterized protein LOC111023918 isoform X2

4.2e-92

79.2

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Query:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPM--YPRIGQQGHSPAPPPPVARVSSHHHSSSAS-PSSSGLGVRVTVKPDFRITPPPQLLPQV
        MAYDYRNKPGH       YG PAS+SPSPS+HPMY   M  YPRIGQQGHSPA  PPVAR+SSHHHSSS S PSSSGLG+ VT+KP++RITPPPQL PQ+
Subjt:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPM--YPRIGQQGHSPAPPPPVARVSSHHHSSSAS-PSSSGLGVRVTVKPDFRITPPPQLLPQV

Query:  GDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGFSS
         DIPRSNFQFDFEFEKKVLAEAEKET NWSRFGL++ P KP E  S+MGSLG+PV SKY+ASGL+REAV  AVANYGDNPTKVQEF KGY LLREMGFSS
Subjt:  GDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGFSS

Query:  NKVVEALLMYDNDTDKAVTHFLGGTS
        NKVVEALLMYDNDTDKAV HFL GTS
Subjt:  NKVVEALLMYDNDTDKAVTHFLGGTS

A0A6J1H2H7 uncharacterized protein LOC111459499

1.1e-100

85.09

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Query:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP
        MAYDYRNKPG+       YG  ASSSPSPSIHPMY Q MYPRIGQQGHSPA  PPVARVSSHHHSSSA     SPSSSGLG+RVT+KP++RITPPPQL P
Subjt:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP

Query:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF
        QVGDIPRSNFQFDFEFEKKVLAEAEKETPNW+RFGLEHPP +PVES+SSMGS G+PVVSKYVASGLSREAVS AVANYGDNPTKVQEFVKGY LLREMGF
Subjt:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF

Query:  SSNKVVEALLMYDNDTDKAVTHFLGGTS
         SNKVVEALLMYDNDTDKAV HFLGGTS
Subjt:  SSNKVVEALLMYDNDTDKAVTHFLGGTS

A0A6J1K3U0 velvet complex subunit B

1.6e-99

84.21

Show/hide

Query:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP
        MAYDYRNKPG+       YG  ASSSPSPSIHPMY Q MYPRIGQQGHSPAPP P  RVSSHHHSSSA     SPSSSGLG+RVT+KP++RITPPPQL P
Subjt:  MAYDYRNKPGH-------YGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSA-----SPSSSGLGVRVTVKPDFRITPPPQLLP

Query:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF
        QVGDIPRSNFQFDFEFEKKVLAEAEKETPNW+RFGLEHPP +PVES+SSMGS G+PVV+KYVASGLSREAVS AVANYGDNPTKVQEFVKGY LLREMGF
Subjt:  QVGDIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF

Query:  SSNKVVEALLMYDNDTDKAVTHFLGGTS
         SNKVVEALLMYDNDTDKAV HFLGGTS
Subjt:  SSNKVVEALLMYDNDTDKAVTHFLGGTS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G53330.1 Ubiquitin-associated/translation elongation factor EF1B protein

4.9e-61

59.21

Show/hide

Query:  MAYDYRNKPG-------HYGQPASSSPSPSI-HPMYAQPMYPRIGQQ-GHSPAPPPPVARVSSHHHSSSASPSSSGLGVRVTVKPDFRITPPPQLLPQVG
        M YDYRNK G        YG P S+SPSPS  HPMY    YP+IGQQ G  P    P  R SS  H++S    SSG+G+RV +KP++RITPPPQLLP+VG
Subjt:  MAYDYRNKPG-------HYGQPASSSPSPSI-HPMYAQPMYPRIGQQ-GHSPAPPPPVARVSSHHHSSSASPSSSGLGVRVTVKPDFRITPPPQLLPQVG

Query:  DIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVE-SASSMGSLG--NPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF
        DI RS+FQFDF  E+KVLAEAEK+ P+WS+FG E+PP K  E S SS+G +   + VV KY ASGL+REAV+ AVANYGDNPTKVQEF  G+  +REMGF
Subjt:  DIPRSNFQFDFEFEKKVLAEAEKETPNWSRFGLEHPPPKPVE-SASSMGSLG--NPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGF

Query:  SSNKVVEALLMYDNDTDKAVTHFLGGTS
         +N V +AL M++NDTDKA+ H L G+S
Subjt:  SSNKVVEALLMYDNDTDKAVTHFLGGTS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCGTACGATTACAGAAACAAGCCCGGCCACTACGGCCAACCCGCTTCATCTTCACCATCTCCGTCAATCCATCCCATGTATGCACAGCCCATGTACCCTAGAATCGG
TCAACAAGGTCATTCACCGGCGCCGCCGCCGCCGGTCGCCAGAGTCTCCTCCCACCACCATTCTTCTTCTGCATCTCCGTCTTCGTCAGGATTGGGCGTTAGGGTTACCG
TTAAACCGGATTTTCGAATTACTCCTCCGCCTCAATTATTGCCACAAGTTGGAGATATTCCTCGGAGCAATTTTCAATTTGATTTTGAGTTTGAGAAAAAGGTTTTAGCT
GAAGCAGAGAAAGAAACTCCGAATTGGAGTCGGTTTGGGTTGGAACATCCTCCTCCTAAACCAGTAGAGTCTGCATCTTCAATGGGTTCTCTTGGAAATCCAGTTGTGAG
CAAGTATGTTGCATCTGGCTTGAGTCGGGAAGCGGTTTCACACGCAGTTGCTAATTATGGAGATAATCCAACCAAGGTTCAAGAATTCGTGAAAGGCTATGCACTCCTAC
GAGAAATGGGATTTTCATCCAACAAGGTGGTCGAGGCATTACTTATGTACGACAATGACACCGATAAGGCTGTAACTCATTTTCTTGGCGGTACGTCTTAA

mRNA sequence

Show/hide mRNA sequence

AATTTCCTTGCTTGAAGCGTTCAACTTGGATTGTTTCTCTGTGCTTTCTTCTTCTTCTTCTTCTGTTCTTCAATGGCGTACGATTACAGAAACAAGCCCGGCCACTACGG
CCAACCCGCTTCATCTTCACCATCTCCGTCAATCCATCCCATGTATGCACAGCCCATGTACCCTAGAATCGGTCAACAAGGTCATTCACCGGCGCCGCCGCCGCCGGTCG
CCAGAGTCTCCTCCCACCACCATTCTTCTTCTGCATCTCCGTCTTCGTCAGGATTGGGCGTTAGGGTTACCGTTAAACCGGATTTTCGAATTACTCCTCCGCCTCAATTA
TTGCCACAAGTTGGAGATATTCCTCGGAGCAATTTTCAATTTGATTTTGAGTTTGAGAAAAAGGTTTTAGCTGAAGCAGAGAAAGAAACTCCGAATTGGAGTCGGTTTGG
GTTGGAACATCCTCCTCCTAAACCAGTAGAGTCTGCATCTTCAATGGGTTCTCTTGGAAATCCAGTTGTGAGCAAGTATGTTGCATCTGGCTTGAGTCGGGAAGCGGTTT
CACACGCAGTTGCTAATTATGGAGATAATCCAACCAAGGTTCAAGAATTCGTGAAAGGCTATGCACTCCTACGAGAAATGGGATTTTCATCCAACAAGGTGGTCGAGGCA
TTACTTATGTACGACAATGACACCGATAAGGCTGTAACTCATTTTCTTGGCGGTACGTCTTAATTAAGAATTCTGGAGATGACCGTGTTGAGAATTCTGTTGTACTTCAA
CTATTTGCATCTTTGTATATGACTATAGAGAACTCTTGTGTCTCGAGATTGTAAAGATGATAAAGAATATAGGCGTTTACTGTGTCTATTCATTTACCTGATGTTTTGGA
TTGAATTCTATTGCAGAATTAACTGATAGACTGATGACAAGTTCAATGGTTACATGCATAGTTTTC

Protein sequence

Show/hide protein sequence

MAYDYRNKPGHYGQPASSSPSPSIHPMYAQPMYPRIGQQGHSPAPPPPVARVSSHHHSSSASPSSSGLGVRVTVKPDFRITPPPQLLPQVGDIPRSNFQFDFEFEKKVLA
EAEKETPNWSRFGLEHPPPKPVESASSMGSLGNPVVSKYVASGLSREAVSHAVANYGDNPTKVQEFVKGYALLREMGFSSNKVVEALLMYDNDTDKAVTHFLGGTS

Sed0024250 (gene) of Chayote v1 genome