CuGenDBv2

Gene ID	Sed0024252
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S13
Genome location	LG03:8147536..8149543
RNA-Seq Expression	Sed0024252
Synteny	Sed0024252
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

PSR93361.1 40S ribosomal protein S13 [Actinidia chinensis var. chinensis]

8.5e-78

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKG+TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_010101741.2 40S ribosomal protein S13 [Morus notabilis]

1.9e-77

99.34

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKIS QDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_021687108.1 40S ribosomal protein S13-like [Hevea brasiliensis]

1.4e-77

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISPQDV+ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_021687881.1 40S ribosomal protein S13-like [Hevea brasiliensis]

2.5e-77

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISPQDV ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_023921946.1 40S ribosomal protein S13 isoform X1 [Quercus suber]

8.5e-78

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISPQDV+ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILR+LKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

TrEMBL top hits

e value

%identity

Alignment

A0A2C9VS14 Ribosomal_S13_N domain-containing protein

1.6e-77

98.01

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISPQDV+ENICKFAKKGLTPSQIGVILRDSHGIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A2R6RT07 40S ribosomal protein S13

4.1e-78

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKG+TPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1DES0 40S ribosomal protein S13

9.2e-78

99.34

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKIS QDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A7N2MIC4 Ribosomal_S13_N domain-containing protein

4.1e-78

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISPQDV+ENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILR+LKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Q9MAV9 Cytoplasmic ribosomal protein S13

1.2e-77

98.01

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKI+PQDVD+NICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

2.8e-76

94.7

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGR+HS+GKGIS+SALPY+RT PSWLKIS QDVDE ICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59223 40S ribosomal protein S13-1

2.0e-77

95.36

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +PQDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59224 40S ribosomal protein S13-2

1.7e-76

94.7

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK + QDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P62302 40S ribosomal protein S13

6.1e-79

97.35

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKIS QDV+ENICKFAKKGLTPSQIGVILRDSHGIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Q69UI1 40S ribosomal protein S13-2

2.0e-69

87.42

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLK +  DV+E I K AKKG  PSQIGV+LRD HGI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

1.4e-78

95.36

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +PQDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

AT4G00100.1 ribosomal protein S13A

1.2e-77

94.7

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK + QDVDE+ICKFAKKGLTPSQIGVILRDSHGI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTCGTATGCACAGCAGAGGAAAAGGTATTTCGGCTTCAGCATTGCCGTACAAGAGGACTCCGCCGAGCTGGCTCAAGATTTCTCCTCAAGATGTTGATGAAAACAT
CTGCAAGTTTGCGAAGAAGGGTTTGACTCCATCTCAGATCGGTGTAATTCTTCGTGATTCTCACGGCATTGCTCAGGTCAAGAGCGTTACTGGCAGCAAGATCCTGCGCA
TTCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAAGCCGTCTCGATTAGAAAGCATTTGGAAAGGAATAGGAAAGACAAGGAC
TCAAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATACGAATCCACAACTGCTAG
CACACTTGTTGCCTGA

mRNA sequence

Show/hide mRNA sequence

AAAAAAAGGCCGTTCTTAGCAGAGCTAGGGTTTCTCGTTTCGTCGAGCTCAGCAGTTGACGCCATTGCCAGATTTTGAAGCTCAGCAAAGGAGCTTTCGAATTCCCTCCA
TACTCGTCCGCCATGGGTCGTATGCACAGCAGAGGAAAAGGTATTTCGGCTTCAGCATTGCCGTACAAGAGGACTCCGCCGAGCTGGCTCAAGATTTCTCCTCAAGATGT
TGATGAAAACATCTGCAAGTTTGCGAAGAAGGGTTTGACTCCATCTCAGATCGGTGTAATTCTTCGTGATTCTCACGGCATTGCTCAGGTCAAGAGCGTTACTGGCAGCA
AGATCCTGCGCATTCTTAAAGCTCATGGGCTTGCTCCGGAGATTCCTGAGGATCTTTACCATTTGATTAAGAAAGCCGTCTCGATTAGAAAGCATTTGGAAAGGAATAGG
AAAGACAAGGACTCAAAGTTCAGGTTGATTCTTGTGGAGAGCAGGATTCACCGGCTAGCCCGCTACTACAAGAAGACCAAGAAGCTCCCACCTGTTTGGAAATACGAATC
CACAACTGCTAGCACACTTGTTGCCTGATTTTGTCTACTGCTGCCCATATGGGCATTTAAGATCTTTTCAGTTACTTCATTTGATGCAAGGTATTTCCATTATGCGATTC
TAGATTAGACACTGAATTTGCTCAAGTTATCACAGAAACATAATGCTCCATTTAGTCTCATTATGATTTTGTAGTTTCTTCTTTGTCTAATTGGACATGATAGTTTTTCT
TATAAATTAGTTACCATTGATATTCTTCTGAACTCAAGAATGAAATTTCTGTTTGAAACATTTTGCTCCATGTCTACCCTGCGCAAGTATGCTGCACACTGAAATTTTCA
AGCGTATTGCGATTTTATATGGTGCTATTTTTTAATATTTCTTATCCTGTGATTACTGAGATGGGTTCATAACTATCTCAATATATGTTATAGCAAACCAAC

Protein sequence

Show/hide protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISPQDVDENICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKD
SKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Sed0024252 (gene) of Chayote v1 genome