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Sed0024261 (gene) of Chayote v1 genome

Gene IDSed0024261
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG04:41118648..41119373
RNA-Seq ExpressionSed0024261
SyntenySed0024261
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5458726.1 hypothetical protein F2P56_022736, partial [Juglans regia]6.5e-2032.77Show/hide
Query:  RDLNVSRLINE-SGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIK
        ++  VS+LI+  +  W   L+ +LFS EEA++IL   LS +   D+ IW  +   +FTV+ AYHL M   R  +   S       +WK  W++EV   +K
Subjt:  RDLNVSRLINE-SGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIK

Query:  MGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKL---LREW-NSSKGFMLKFLRAI
        +  W  LNN +PT +N+  K I    +C +CG  EE+  H++  C  A   W +    +++W N    FM  +++ I
Subjt:  MGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKL---LREW-NSSKGFMLKFLRAI

XP_018810031.2 uncharacterized protein LOC108982986 [Juglans regia]4.5e-2133.33Show/hide
Query:  RDLNVSRLINE-SGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIK
        ++  VS+LI+  +  W   ++ +LFS EEA +IL   LS +   D+ IW F+ + +FTV+ AYHL M   R  +   S       +WK  W++EV   +K
Subjt:  RDLNVSRLINE-SGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIK

Query:  MGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKL---LREW-NSSKGFMLKFLRAI
        +  W  LNN +PT +N+  K I    +C +CG +EE+ LH++  C  A   W +    +++W N    FM  +++ I
Subjt:  MGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKL---LREW-NSSKGFMLKFLRAI

XP_042939515.1 uncharacterized protein LOC122274552 [Carya illinoinensis]3.8e-2034.36Show/hide
Query:  VSRLI-NESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIKMGAW
        VS LI +ES  W   LV+++FS+EEA  I S  +S    DD++IW       FTVK AYH  + +        S     + LW   W++  + K+K+  W
Subjt:  VSRLI-NESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIKMGAW

Query:  NILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGK---LLREWNSSKG
          LN  +PT++ +  + +   S C +C + EET++HV+ DC+ A   WG+    +R+W  S G
Subjt:  NILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGK---LLREWNSSKG

XP_042942906.1 uncharacterized protein LOC122277092 [Carya illinoinensis]5.0e-2037.82Show/hide
Query:  RDLNVSRLINES-GHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENL-WKAFWKVEVAPKI
        R+  V +LI E  G W A L++ +F+EEEA++IL+T +S    DD+ IW  S    +TVK AYH  +   R      S  Y VEN  WK+ W++     I
Subjt:  RDLNVSRLINES-GHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENL-WKAFWKVEVAPKI

Query:  KMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKL
        KM  W  +NN +PTK N+  + +    +C +C   EET  HV+ +C  AV  W ++
Subjt:  KMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKL

XP_042958109.1 uncharacterized protein LOC122293655 [Carya illinoinensis]2.6e-2135.58Show/hide
Query:  VSRLI-NESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIKMGAW
        VS LI +ES  W   LV+++FS+EEA  I S  +S    DD++IW  S    FTVK AYH  + +        S     + LW   W++  + K+K+  W
Subjt:  VSRLI-NESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIKMGAW

Query:  NILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGK---LLREWNSSKG
          LN  +PT++ +  + +   S C +C + EET++HV+ DC  AV  WG+    +R W  S G
Subjt:  NILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGK---LLREWNSSKG

TrEMBL top hitse value%identityAlignment
A0A2I4DSB3 uncharacterized protein LOC1089829862.2e-2133.33Show/hide
Query:  RDLNVSRLINE-SGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIK
        ++  VS+LI+  +  W   ++ +LFS EEA +IL   LS +   D+ IW F+ + +FTV+ AYHL M   R  +   S       +WK  W++EV   +K
Subjt:  RDLNVSRLINE-SGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIK

Query:  MGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKL---LREW-NSSKGFMLKFLRAI
        +  W  LNN +PT +N+  K I    +C +CG +EE+ LH++  C  A   W +    +++W N    FM  +++ I
Subjt:  MGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKL---LREW-NSSKGFMLKFLRAI

A0A2N9GC52 Uncharacterized protein1.9e-2031.28Show/hide
Query:  TENCFGQRSLVGEREDNTYVYSVEGAGRDLNVSRLINESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAK
        T + F  +S +   ++NT V ++           +  ++  W APL++++F   EA+ I S  LS     D IIW+ + N +++V+ AYHL M   +  +
Subjt:  TENCFGQRSLVGEREDNTYVYSVEGAGRDLNVSRLINESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAK

Query:  AFYSDTYVVENLWKAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKLL----REWNSSKGF
        +  S+   V NLWK  W   V  KIK+  W    N +PTK N+  K       C LC    E+ +HV+ DCK A + WG  +    ++W  S  F
Subjt:  AFYSDTYVVENLWKAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKLL----REWNSSKGF

A0A2N9HW96 Reverse transcriptase domain-containing protein1.9e-2031.28Show/hide
Query:  TENCFGQRSLVGEREDNTYVYSVEGAGRDLNVSRLINESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAK
        T + F  +S +   ++NT V ++           +  ++  W APL++++F   EA+ I S  LS     D IIW+ + N +++V+ AYHL M   +  +
Subjt:  TENCFGQRSLVGEREDNTYVYSVEGAGRDLNVSRLINESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAK

Query:  AFYSDTYVVENLWKAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKLL----REWNSSKGF
        +  S+   V NLWK  W   V  KIK+  W    N +PTK N+  K       C LC    E+ +HV+ DCK A + WG  +    ++W  S  F
Subjt:  AFYSDTYVVENLWKAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKLL----REWNSSKGF

A0A2N9I4S0 Uncharacterized protein4.1e-2030.77Show/hide
Query:  TENCFGQRSLVGEREDNTYVYSVEGAGRDLNVSRLINESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAK
        T + F  +S +   ++NT V ++           +  ++  W APL++++F   EA+ I S  L+     D IIW+ + N +++V+ AYHL M   +  +
Subjt:  TENCFGQRSLVGEREDNTYVYSVEGAGRDLNVSRLINESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAK

Query:  AFYSDTYVVENLWKAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKLL----REWNSSKGF
        +  S+   V NLWK  W   V  KIK+  W    N +PTK N+  K       C LC    E+ +HV+ DCK A + WG  +    ++W  S  F
Subjt:  AFYSDTYVVENLWKAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKLL----REWNSSKGF

A0A803NGM9 Uncharacterized protein2.9e-2133.75Show/hide
Query:  VYSVEGAGRDLNVSRLINESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKV
        +Y       +L V+ L N  G W    V S+F+ E+A +ILS   +    +D+I+W++S N  +TVK  Y +A   S +++ + SD  +  + WKA W++
Subjt:  VYSVEGAGRDLNVSRLINESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWKV

Query:  EVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLC-GKAEETNLHVIKDCKVAVKAW
        ++ PKIK   W ++ N+IPT AN+  +G+D  ++C+ C G   ET  H + +CK + + W
Subjt:  EVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLC-GKAEETNLHVIKDCKVAVKAW

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657503.0e-0725.74Show/hide
Query:  DEIIWNFSSNRLFTVKRAYHLAM--NVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVI
        D + W FS +  F+V+ AY +     V R   A         + +   WKV V  ++K   W + N  + T+     + +   +VC +C    E+ LHV+
Subjt:  DEIIWNFSSNRLFTVKRAYHLAM--NVSRSAKAFYSDTYVVENLWKAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVI

Query:  KDCKVAVKAWGKLLREWNSSKGFMLKFLRAIFLKLY
        +DC   +  W +++ +    +GF   F +++F  LY
Subjt:  KDCKVAVKAWGKLLREWNSSKGFMLKFLRAIFLKLY

Arabidopsis top hitse value%identityAlignment
AT2G02650.1 Ribonuclease H-like superfamily protein1.2e-0632.31Show/hide
Query:  KAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAW
        +A WK+ VAPKIK   W  +   + T   ++++ ID   +C  C   EET  H++ +C      W
Subjt:  KAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAW

AT3G09510.1 Ribonuclease H-like superfamily protein5.5e-0920.62Show/hide
Query:  SVEGAGRDLNVSRLINESGHWY---APLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWK
        + E   +++ ++ L    G +Y      +     + +   I    L+   K D+IIWN+++   +TV+  Y L  +   +     +  +   +L    W 
Subjt:  SVEGAGRDLNVSRLINESGHWY---APLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDTYVVENLWKAFWK

Query:  VEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAW
        + + PK+K   W  L+  + T   +  +G+     C  C +  E+  H +  C  A  AW
Subjt:  VEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTCATCTGACTGAAAATTGTTTTGGGCAGAGATCCTTGGTTGGAGAGAGAGAGGACAATACTTATGTTTATAGTGTGGAGGGTGCCGGTAGAGATCTCAATGTTTC
CAGGTTGATTAATGAGAGTGGTCATTGGTATGCTCCCTTGGTCGAAAGTCTTTTCTCTGAGGAGGAGGCTAATATTATTCTAAGCACGTCGTTGAGCTCTATGCCGAAGG
ATGATGAAATTATTTGGAATTTTAGCTCCAACAGGCTGTTTACTGTTAAAAGAGCGTATCACTTGGCGATGAACGTGTCTCGGTCCGCTAAGGCCTTTTATTCTGATACT
TATGTGGTGGAAAATCTCTGGAAGGCCTTCTGGAAGGTTGAGGTGGCTCCTAAAATAAAGATGGGTGCCTGGAATATTTTAAATAATTATATCCCTACGAAAGCAAACAT
TCAAGCCAAAGGGATTGATACTATGAGTGTTTGTATGTTGTGTGGGAAGGCCGAGGAGACCAATCTTCATGTGATCAAAGATTGTAAAGTTGCGGTTAAGGCTTGGGGAA
AGTTGCTTCGGGAGTGGAATTCTAGCAAGGGCTTTATGCTAAAATTCCTAAGGGCGATCTTTTTAAAGCTTTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGTGTCATCTGACTGAAAATTGTTTTGGGCAGAGATCCTTGGTTGGAGAGAGAGAGGACAATACTTATGTTTATAGTGTGGAGGGTGCCGGTAGAGATCTCAATGTTTC
CAGGTTGATTAATGAGAGTGGTCATTGGTATGCTCCCTTGGTCGAAAGTCTTTTCTCTGAGGAGGAGGCTAATATTATTCTAAGCACGTCGTTGAGCTCTATGCCGAAGG
ATGATGAAATTATTTGGAATTTTAGCTCCAACAGGCTGTTTACTGTTAAAAGAGCGTATCACTTGGCGATGAACGTGTCTCGGTCCGCTAAGGCCTTTTATTCTGATACT
TATGTGGTGGAAAATCTCTGGAAGGCCTTCTGGAAGGTTGAGGTGGCTCCTAAAATAAAGATGGGTGCCTGGAATATTTTAAATAATTATATCCCTACGAAAGCAAACAT
TCAAGCCAAAGGGATTGATACTATGAGTGTTTGTATGTTGTGTGGGAAGGCCGAGGAGACCAATCTTCATGTGATCAAAGATTGTAAAGTTGCGGTTAAGGCTTGGGGAA
AGTTGCTTCGGGAGTGGAATTCTAGCAAGGGCTTTATGCTAAAATTCCTAAGGGCGATCTTTTTAAAGCTTTATTAG
Protein sequenceShow/hide protein sequence
MCHLTENCFGQRSLVGEREDNTYVYSVEGAGRDLNVSRLINESGHWYAPLVESLFSEEEANIILSTSLSSMPKDDEIIWNFSSNRLFTVKRAYHLAMNVSRSAKAFYSDT
YVVENLWKAFWKVEVAPKIKMGAWNILNNYIPTKANIQAKGIDTMSVCMLCGKAEETNLHVIKDCKVAVKAWGKLLREWNSSKGFMLKFLRAIFLKLY