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Sed0024288 (gene) of Chayote v1 genome

Gene IDSed0024288
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG04:36485543..36486523
RNA-Seq ExpressionSed0024288
SyntenySed0024288
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR025558 - Domain of unknown function DUF4283
IPR025836 - Zinc knuckle CX2CX4HX4C
IPR040256 - Uncharacterized protein At4g02000-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG46581.1 hypothetical protein EZV62_027919 [Acer yangbiense]1.2e-2532.98Show/hide
Query:  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKM
        ++ +VFK+V+ +IW +   + IE VG N F   F+N   + R+++  PW +++ +I+     G   +  M+F   AFWIQ+H+V   C T+     LG M
Subjt:  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKM

Query:  LGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGEGRPLPFGEELR
        +G+    D        GK+L ++VAI+V  PLH+ L++       E  + L YE L   C  CG++GH+  +C+  + G+   LPFG  L+
Subjt:  LGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGEGRPLPFGEELR

TXG48193.1 hypothetical protein EZV62_027487 [Acer yangbiense]2.1e-2529.85Show/hide
Query:  ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFE
        ENL L +++A  + E+ ED +   + ++D           +V+ + FK +I +IWN   +V +E VG N F+  F NK  + ++    PW++  ++I+ E
Subjt:  ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFE

Query:  AMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIF
           G   ++K++F    FW+Q+HD+   C  +   + L + +GE V   +E  ++  GK++ +KV +D+  PL + L++K G       V L YE L  F
Subjt:  AMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIF

Query:  CRGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTIIFRGKGMVVNRFPGRGRGRGR---GRRE
        C  CGR+GH   +C    +     +G+   FG  +R  T I + K   ++   G    RGR   G RE
Subjt:  CRGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTIIFRGKGMVVNRFPGRGRGRGR---GRRE

TXG53376.1 hypothetical protein EZV62_022545 [Acer yangbiense]3.5e-2532.96Show/hide
Query:  ENLELAEQEAQEIFELEE---DDVSTYEREL-------DEVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEA
        ENL LAE++   +   EE   D V    R L        +V+ + FK +I +IW+   +V +E+VG N+F+  F N   + R++   PW + +++I+ E 
Subjt:  ENLELAEQEAQEIFELEE---DDVSTYEREL-------DEVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEA

Query:  MSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFC
         +G+  VSK+ F    FW+Q+HD+   C     A+ L K +GE V   SE  ++  GKF+ +KV ID+  PL + LKLK G       V L YE+L  FC
Subjt:  MSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFC

Query:  RGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTIIFRGKGMVVNRFPGRG--RGRGRGRREDYQG
          CGR+G+   +C    +  +  EG    FG  L+  T + + K  + ++  G    R R  G   D +G
Subjt:  RGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTIIFRGKGMVVNRFPGRG--RGRGRGRREDYQG

TXG57799.1 hypothetical protein EZV62_015628 [Acer yangbiense]3.5e-2531.78Show/hide
Query:  ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFE
        E L + +++ + + E+ E+D+     ++D           +V+ D FK +I +IW+   +V +E VG N F+  F NK  + R+ +  PW + +++I+ E
Subjt:  ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFE

Query:  AMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIF
           G   +SK+ F     W+Q+HD+   C      R L + +GE V   SE  ++  GK++ +KV ID+  PL + LKLK G       V L YE LS F
Subjt:  AMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIF

Query:  CRGCGRVGHKASKC----SLVVIGEGRPLPFGEELR
        C  CGR+GH   +C    +  +  EG P+ F   L+
Subjt:  CRGCGRVGHKASKC----SLVVIGEGRPLPFGEELR

TXG62563.1 hypothetical protein EZV62_009557 [Acer yangbiense]6.0e-2532.16Show/hide
Query:  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKM
        V+ + FK V+ RIW+I   V IEA+  N+F C F N   ++RI+   PW ++ A+I+FE   G   +  M F    FW+Q+H+++  C +E     LG M
Subjt:  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKM

Query:  LGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGEGRPLPFGEELREPTIIFRGK
        + E    D E  +   G+F+ ++V I V  PL ++L++      +   + L YE +  FC  C R+GH   +C+  V G+ + +     +R    + R  
Subjt:  LGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGEGRPLPFGEELREPTIIFRGK

Query:  GMVVNRFPGRGRGR-GRGRREDYQGGMEEVDERVVDRGGEGAR-GGEIGQP-SGR
            N F G+G GR  +GRR+  +GG      R V R  +  R G ++ +P SGR
Subjt:  GMVVNRFPGRGRGR-GRGRREDYQGGMEEVDERVVDRGGEGAR-GGEIGQP-SGR

TrEMBL top hitse value%identityAlignment
A0A5C7GP26 CCHC-type domain-containing protein5.8e-2632.98Show/hide
Query:  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKM
        ++ +VFK+V+ +IW +   + IE VG N F   F+N   + R+++  PW +++ +I+     G   +  M+F   AFWIQ+H+V   C T+     LG M
Subjt:  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKM

Query:  LGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGEGRPLPFGEELR
        +G+    D        GK+L ++VAI+V  PLH+ L++       E  + L YE L   C  CG++GH+  +C+  + G+   LPFG  L+
Subjt:  LGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGEGRPLPFGEELR

A0A5C7GU64 CCHC-type domain-containing protein9.9e-2629.85Show/hide
Query:  ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFE
        ENL L +++A  + E+ ED +   + ++D           +V+ + FK +I +IWN   +V +E VG N F+  F NK  + ++    PW++  ++I+ E
Subjt:  ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFE

Query:  AMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIF
           G   ++K++F    FW+Q+HD+   C  +   + L + +GE V   +E  ++  GK++ +KV +D+  PL + L++K G       V L YE L  F
Subjt:  AMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIF

Query:  CRGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTIIFRGKGMVVNRFPGRGRGRGR---GRRE
        C  CGR+GH   +C    +     +G+   FG  +R  T I + K   ++   G    RGR   G RE
Subjt:  CRGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTIIFRGKGMVVNRFPGRGRGRGR---GRRE

A0A5C7HB59 Uncharacterized protein1.7e-2532.96Show/hide
Query:  ENLELAEQEAQEIFELEE---DDVSTYEREL-------DEVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEA
        ENL LAE++   +   EE   D V    R L        +V+ + FK +I +IW+   +V +E+VG N+F+  F N   + R++   PW + +++I+ E 
Subjt:  ENLELAEQEAQEIFELEE---DDVSTYEREL-------DEVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEA

Query:  MSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFC
         +G+  VSK+ F    FW+Q+HD+   C     A+ L K +GE V   SE  ++  GKF+ +KV ID+  PL + LKLK G       V L YE+L  FC
Subjt:  MSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFC

Query:  RGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTIIFRGKGMVVNRFPGRG--RGRGRGRREDYQG
          CGR+G+   +C    +  +  EG    FG  L+  T + + K  + ++  G    R R  G   D +G
Subjt:  RGCGRVGHKASKC----SLVVIGEGRPLPFGEELREPTIIFRGKGMVVNRFPGRG--RGRGRGRREDYQG

A0A5C7HLY4 CCHC-type domain-containing protein1.7e-2531.78Show/hide
Query:  ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFE
        E L + +++ + + E+ E+D+     ++D           +V+ D FK +I +IW+   +V +E VG N F+  F NK  + R+ +  PW + +++I+ E
Subjt:  ENLELAEQEAQEIFELEEDDVSTYERELD-----------EVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFE

Query:  AMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIF
           G   +SK+ F     W+Q+HD+   C      R L + +GE V   SE  ++  GK++ +KV ID+  PL + LKLK G       V L YE LS F
Subjt:  AMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIF

Query:  CRGCGRVGHKASKC----SLVVIGEGRPLPFGEELR
        C  CGR+GH   +C    +  +  EG P+ F   L+
Subjt:  CRGCGRVGHKASKC----SLVVIGEGRPLPFGEELR

A0A5C7HZD3 CCHC-type domain-containing protein2.9e-2532.16Show/hide
Query:  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKM
        V+ + FK V+ RIW+I   V IEA+  N+F C F N   ++RI+   PW ++ A+I+FE   G   +  M F    FW+Q+H+++  C +E     LG M
Subjt:  VSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWIQLHDVTPACHTESNARKLGKM

Query:  LGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGEGRPLPFGEELREPTIIFRGK
        + E    D E  +   G+F+ ++V I V  PL ++L++      +   + L YE +  FC  C R+GH   +C+  V G+ + +     +R    + R  
Subjt:  LGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGEGRPLPFGEELREPTIIFRGK

Query:  GMVVNRFPGRGRGR-GRGRREDYQGGMEEVDERVVDRGGEGAR-GGEIGQP-SGR
            N F G+G GR  +GRR+  +GG      R V R  +  R G ++ +P SGR
Subjt:  GMVVNRFPGRGRGR-GRGRREDYQGGMEEVDERVVDRGGEGAR-GGEIGQP-SGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAATCTGGAGTTAGCTGAACAGGAAGCCCAGGAGATCTTCGAGCTGGAAGAAGATGATGTCTCAACGTATGAAAGGGAGTTAGATGAGGTCAGCTCCGATGTTTT
TAAGAAAGTTATTCCTAGGATTTGGAACATTGAAAACAAAGTTTCAATTGAAGCCGTGGGAGCTAATGTTTTCATTTGCTCTTTTGAGAACAAGATCTTGAAGGAAAGGA
TAATTATGGCAAGCCCATGGATTTACAATGATGCAGTGATCTTGTTCGAAGCTATGTCTGGTGATAAAAGGGTTTCTAAGATGGAATTCGCAACTGGGGCTTTCTGGATT
CAATTACACGATGTTACTCCGGCGTGCCATACAGAAAGTAATGCAAGGAAGTTGGGGAAAATGTTAGGGGAATTTGTAGGGTGGGATAGTGAAGGGGATCAAAAAGATAG
GGGAAAGTTTTTAGGGTTGAAAGTAGCCATTGACGTTCGAGCTCCCTTGCATAAAGCTCTGAAACTGAAAAGCGGGGCAATGGCAGCAGAGAAATGGGTAAGGTTATCTT
ACGAAGAACTCTCAATCTTTTGTCGAGGCTGTGGAAGGGTCGGACACAAGGCCAGCAAGTGTAGTTTAGTGGTGATTGGGGAGGGGAGGCCGCTTCCATTTGGGGAAGAG
CTTCGGGAACCGACGATTATTTTTAGGGGTAAAGGTATGGTTGTGAATCGTTTTCCTGGGAGAGGGAGAGGGAGAGGGCGAGGAAGAAGAGAGGATTATCAAGGAGGAAT
GGAAGAGGTCGATGAAAGAGTGGTTGATAGAGGCGGTGAAGGTGCTCGAGGAGGGGAGATAGGACAGCCAAGTGGGAGGGCTCCGGTTGAGATTCGCCTGAAGTTCGCCG
ATAACGTGTCGCCAGAAATTGCATCAGGCGAAGACGAGGACATTGAGGGAGGAAGTCAGAGGTTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGAATCTGGAGTTAGCTGAACAGGAAGCCCAGGAGATCTTCGAGCTGGAAGAAGATGATGTCTCAACGTATGAAAGGGAGTTAGATGAGGTCAGCTCCGATGTTTT
TAAGAAAGTTATTCCTAGGATTTGGAACATTGAAAACAAAGTTTCAATTGAAGCCGTGGGAGCTAATGTTTTCATTTGCTCTTTTGAGAACAAGATCTTGAAGGAAAGGA
TAATTATGGCAAGCCCATGGATTTACAATGATGCAGTGATCTTGTTCGAAGCTATGTCTGGTGATAAAAGGGTTTCTAAGATGGAATTCGCAACTGGGGCTTTCTGGATT
CAATTACACGATGTTACTCCGGCGTGCCATACAGAAAGTAATGCAAGGAAGTTGGGGAAAATGTTAGGGGAATTTGTAGGGTGGGATAGTGAAGGGGATCAAAAAGATAG
GGGAAAGTTTTTAGGGTTGAAAGTAGCCATTGACGTTCGAGCTCCCTTGCATAAAGCTCTGAAACTGAAAAGCGGGGCAATGGCAGCAGAGAAATGGGTAAGGTTATCTT
ACGAAGAACTCTCAATCTTTTGTCGAGGCTGTGGAAGGGTCGGACACAAGGCCAGCAAGTGTAGTTTAGTGGTGATTGGGGAGGGGAGGCCGCTTCCATTTGGGGAAGAG
CTTCGGGAACCGACGATTATTTTTAGGGGTAAAGGTATGGTTGTGAATCGTTTTCCTGGGAGAGGGAGAGGGAGAGGGCGAGGAAGAAGAGAGGATTATCAAGGAGGAAT
GGAAGAGGTCGATGAAAGAGTGGTTGATAGAGGCGGTGAAGGTGCTCGAGGAGGGGAGATAGGACAGCCAAGTGGGAGGGCTCCGGTTGAGATTCGCCTGAAGTTCGCCG
ATAACGTGTCGCCAGAAATTGCATCAGGCGAAGACGAGGACATTGAGGGAGGAAGTCAGAGGTTGTAG
Protein sequenceShow/hide protein sequence
MENLELAEQEAQEIFELEEDDVSTYERELDEVSSDVFKKVIPRIWNIENKVSIEAVGANVFICSFENKILKERIIMASPWIYNDAVILFEAMSGDKRVSKMEFATGAFWI
QLHDVTPACHTESNARKLGKMLGEFVGWDSEGDQKDRGKFLGLKVAIDVRAPLHKALKLKSGAMAAEKWVRLSYEELSIFCRGCGRVGHKASKCSLVVIGEGRPLPFGEE
LREPTIIFRGKGMVVNRFPGRGRGRGRGRREDYQGGMEEVDERVVDRGGEGARGGEIGQPSGRAPVEIRLKFADNVSPEIASGEDEDIEGGSQRL