CuGenDBv2

Gene ID	Sed0024289
Organism	Sechium edule (Chayote v1)
Description	cell wall protein RBR3-like isoform X2
Genome location	LG03:2123163..2125983
RNA-Seq Expression	Sed0024289
Synteny	Sed0024289
Gene Ontology terms	NA
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022134150.1 uncharacterized protein LOC111006488 isoform X3 [Momordica charantia]

3.3e-67

61.24

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Query:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA------------NPSFEFLPAEPN-----
        ME+ KRN   RKPLSDCTN VLSSQS ASNFS+ IK R+RVIKS VK+ VN+EKK ESSF SAS S++LQA            NPS + LP EPN     
Subjt:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA------------NPSFEFLPAEPN-----

Query:  --------------------------PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSS
                                  PSS SLP EASTP RR DLPS SGTD VSEP+SFYSRR+PTNKRKS EI   PF+F+TASK+ T  EK+DGYSS
Subjt:  --------------------------PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSS

Query:  PSKAKTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
        PSKA+TVP +KRQR +IYG DE +  LPREFVE+QKAYFSEVDAF+L +EEAKSSDSE
Subjt:  PSKAKTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

XP_022952551.1 uncharacterized protein LOC111455207 isoform X1 [Cucurbita moschata]

1.6e-66

65.81

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Query:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------
        MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+KS VK+VVN+EK+  SS ASASTSV+LQA NPS EFLP +P+                
Subjt:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------

Query:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE
          PSS S+P E STP R  DLPS SGTD V EP+SFYSRR+P N+RKS E   APF+FSTASK+ +R EK+   SSPS+A+TVPYRKRQR +IYG+DE +
Subjt:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE

Query:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
          LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Subjt:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

XP_022991070.1 uncharacterized protein LOC111487776 isoform X1 [Cucurbita maxima]

2.5e-67

66.67

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Query:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------
        MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+K  VK+VVN+EK+  SSFASASTSV+LQA NPS +FLP +P+                
Subjt:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------

Query:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE
          PSS SLP E STP R  DLPS SGTD V EP+SFYSRR+P N+RKS E   APFVFSTASK+ TR EK+   SSPS+A+TVPYRKRQR +IYG+DE +
Subjt:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE

Query:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
          LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Subjt:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

XP_023515045.1 uncharacterized protein LOC111779162 isoform X1 [Cucurbita pepo subsp. pepo]

1.9e-67

66.24

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Query:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------
        MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+KS VK+V+N+EK+  SSFASASTSV+LQA NPS EFLP +P+                
Subjt:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------

Query:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE
          PSS S+P E STP R  DLPS SGTD V EP+SFYSRR+P N+RKS E   APF+FSTASK+ TR EK+   SSPS+A+TVPYRKRQR +IYG+DE +
Subjt:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE

Query:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
          LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Subjt:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

XP_038884349.1 uncharacterized protein LOC120075210 isoform X3 [Benincasa hispida]

3.0e-68

66.67

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Query:  MESKK---RNRKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEP-----------------
        MES+K   R RKPL+DCTN +LSSQS ASNFSA+IK RKRVIKS VK+VVN+EKK +   AS STSV+L+A NPS +FLP EP                 
Subjt:  MESKK---RNRKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEP-----------------

Query:  -NPSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE
          PSS  LP E STP RR DLPS SGTD VSEP+SFYSRR PTNKRKSVEI  APF+FST+SK+ TR  K++GY SPSKAKTVP +KRQR+++Y  DE  
Subjt:  -NPSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE

Query:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
          LPREFVEQQKAYFSEVDAFELP+EEAKSSDSE
Subjt:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

TrEMBL top hits

e value

%identity

Alignment

A0A6J1BXA7 uncharacterized protein LOC111006488 isoform X3

1.6e-67

61.24

Show/hide

Query:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA------------NPSFEFLPAEPN-----
        ME+ KRN   RKPLSDCTN VLSSQS ASNFS+ IK R+RVIKS VK+ VN+EKK ESSF SAS S++LQA            NPS + LP EPN     
Subjt:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA------------NPSFEFLPAEPN-----

Query:  --------------------------PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSS
                                  PSS SLP EASTP RR DLPS SGTD VSEP+SFYSRR+PTNKRKS EI   PF+F+TASK+ T  EK+DGYSS
Subjt:  --------------------------PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSS

Query:  PSKAKTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
        PSKA+TVP +KRQR +IYG DE +  LPREFVE+QKAYFSEVDAF+L +EEAKSSDSE
Subjt:  PSKAKTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

A0A6J1C164 uncharacterized protein LOC111006488 isoform X1

9.6e-65

58.3

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Query:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA------------NPSFEFLPAEPN-----
        ME+ KRN   RKPLSDCTN VLSSQS ASNFS+ IK R+RVIKS VK+ VN+EKK ESSF SAS S++LQA            NPS + LP EPN     
Subjt:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA------------NPSFEFLPAEPN-----

Query:  --------------------------PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSS
                                  PSS SLP EASTP RR DLPS SGTD VSEP+SFYSRR+PTNKRKS EI   PF+F+TASK+ T  EK+DGYSS
Subjt:  --------------------------PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSS

Query:  PSKAKTVPYRK-------------RQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
        PSKA+TVP +K             RQR +IYG DE +  LPREFVE+QKAYFSEVDAF+L +EEAKSSDSE
Subjt:  PSKAKTVPYRK-------------RQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

A0A6J1GKJ2 uncharacterized protein LOC111455207 isoform X1

7.9e-67

65.81

Show/hide

Query:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------
        MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+KS VK+VVN+EK+  SS ASASTSV+LQA NPS EFLP +P+                
Subjt:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------

Query:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE
          PSS S+P E STP R  DLPS SGTD V EP+SFYSRR+P N+RKS E   APF+FSTASK+ +R EK+   SSPS+A+TVPYRKRQR +IYG+DE +
Subjt:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE

Query:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
          LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Subjt:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

A0A6J1JPQ1 cell wall protein RBR3-like isoform X2

7.4e-65

65.81

Show/hide

Query:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------
        MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+K  VK+VVN+EK+  SSFASASTSV+LQA NPS +FLP +P+                
Subjt:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------

Query:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE
          PSS SLP E STP R  DLPS S  D V EP+SFYSRR+P N+RKS E   APFVFSTASK+ TR EK+   SSPS+A+TVPYRKRQR +IYG+DE +
Subjt:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE

Query:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
          LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Subjt:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

A0A6J1JRU8 uncharacterized protein LOC111487776 isoform X1

1.2e-67

66.67

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Query:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------
        MES+KRN   RKPL+DCTN VLSSQS ASN SAAIK RKRV+K  VK+VVN+EK+  SSFASASTSV+LQA NPS +FLP +P+                
Subjt:  MESKKRN---RKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQA-NPSFEFLPAEPN----------------

Query:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE
          PSS SLP E STP R  DLPS SGTD V EP+SFYSRR+P N+RKS E   APFVFSTASK+ TR EK+   SSPS+A+TVPYRKRQR +IYG+DE +
Subjt:  --PSSCSLPIEASTPLRRTDLPSCSGTDHVSEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECE

Query:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE
          LPREFVE+QKAYFSEVDAFEL +EEAKSSDSE
Subjt:  FVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G56250.1 unknown protein

2.5e-12

32.09

Show/hide

Query:  RKPLSDCTNIV-LSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQANPSFEFLPAEPNPSSCSLPIEASTPLRRTDLPSCSGTD
        RKPL+DCTN V  SSQ  +S+   A  S    +K +V++    EK ++ +  +++T+ ++ + P    +       S  L   AS P R     S  G  
Subjt:  RKPLSDCTNIV-LSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQANPSFEFLPAEPNPSSCSLPIEASTPLRRTDLPSCSGTD

Query:  --HVSEPKSFYS-RRNPTNKRKSVEITDAPFVFSTASKVETRVE----KKDGYSSPSKAKT--VPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVD
            +EP S Y+ RR  + +++S    DA    S A+++   +     KK   +S +K KT  V  +KRQR+     ++      ++++E+QKAYF+E+D
Subjt:  --HVSEPKSFYS-RRNPTNKRKSVEITDAPFVFSTASKVETRVE----KKDGYSSPSKAKT--VPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVD

Query:  AFELPMEEAKSSDSE
        AFELP+EE  +SDS+
Subjt:  AFELPMEEAKSSDSE

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCAATGGAATCCAAGAAACGAAATCGAAAACCGCTCTCGGATTGTACCAATATCGTCCTCTCCTCGCAATCGCCGGCTTCAAATTTCTCCGCTGCAATCAAATCTCG
CAAGCGTGTAATTAAATCCGTCGTTAAAGAAGTTGTCAACGACGAGAAGAAACGCGAATCGAGTTTTGCGTCTGCATCTACATCCGTTGATTTACAAGCGAACCCTAGTT
TTGAGTTTCTTCCTGCAGAACCAAACCCTAGTTCTTGTAGTCTTCCTATAGAAGCATCCACTCCTTTGCGGCGTACTGATTTGCCGTCTTGTTCTGGAACAGATCATGTT
TCTGAGCCCAAGTCCTTCTACAGTCGAAGGAACCCGACGAATAAAAGGAAGAGCGTTGAGATAACAGATGCACCATTTGTCTTCTCTACCGCATCAAAAGTCGAAACTAG
GGTTGAGAAAAAAGATGGATACAGCAGCCCATCCAAAGCGAAGACTGTACCATATAGAAAGAGGCAGCGCTCCTCAATATATGGGGACGATGAATGCGAGTTCGTTCTTC
CACGGGAATTTGTTGAGCAGCAGAAAGCATATTTTTCAGAAGTTGATGCATTTGAACTGCCAATGGAGGAGGCTAAATCATCGGACTCGGAGTAG

mRNA sequence

Show/hide mRNA sequence

GTTTACGGCCTTACAATTATCGCTCTCAAATCTTCCCCTCGAAGTTTCATCTTCAAAACCATTTTCCCGCCACCGCCACCGCCACCGCCACCGCCAAATTTCTCCGGTCA
CTTCTTCAGCGCATCTTCTTCAACATGAACATCAGGTAACACTTTCTTCTCTCTGTGAAACAGGAAGGGGATGGCAATGGAATCCAAGAAACGAAATCGAAAACCGCTCT
CGGATTGTACCAATATCGTCCTCTCCTCGCAATCGCCGGCTTCAAATTTCTCCGCTGCAATCAAATCTCGCAAGCGTGTAATTAAATCCGTCGTTAAAGAAGTTGTCAAC
GACGAGAAGAAACGCGAATCGAGTTTTGCGTCTGCATCTACATCCGTTGATTTACAAGCGAACCCTAGTTTTGAGTTTCTTCCTGCAGAACCAAACCCTAGTTCTTGTAG
TCTTCCTATAGAAGCATCCACTCCTTTGCGGCGTACTGATTTGCCGTCTTGTTCTGGAACAGATCATGTTTCTGAGCCCAAGTCCTTCTACAGTCGAAGGAACCCGACGA
ATAAAAGGAAGAGCGTTGAGATAACAGATGCACCATTTGTCTTCTCTACCGCATCAAAAGTCGAAACTAGGGTTGAGAAAAAAGATGGATACAGCAGCCCATCCAAAGCG
AAGACTGTACCATATAGAAAGAGGCAGCGCTCCTCAATATATGGGGACGATGAATGCGAGTTCGTTCTTCCACGGGAATTTGTTGAGCAGCAGAAAGCATATTTTTCAGA
AGTTGATGCATTTGAACTGCCAATGGAGGAGGCTAAATCATCGGACTCGGAGTAGATGGTGCTGTATAGTTTTGTGAAGCATAGGCAATGGAGATTCAAGATAGTAGTGT
GCATGGGGAAGCTGGAAAGTAGTTCATGTTCATAACTCATAGTTCCGGCTTGCTCACTTCTGTCGTTCGATGCAGGTGCTGTTCTTTCAACTCTTTCAAATATGTTAGCT
TTTAGTGTCTTTAAGATCTCTCTCTCCCTCTTTTTAGTTCGACGTATGGGATGAGGAGATTTAAATCGCTATGTAGTTTAATCAATTGAGCTATGATGATGTTGGCTAAT
GAGAAAGTTGATCTTTTTTATTTGTTAGGCTGAGAATTTTTTTTTAATTTTTGCATTTGCAATATAATCTTCAAGTGTGGCTTTATAGACTAATACAGGTTTGGACTGGA
TAGGTAACTTGGCCACAGATCAAAGAGGGAAGTGTTTGGTCAATTAGGGTGTGTTTGGGCTCCCGTTTATTATAAACGGTGGTTATCTAAACCTGCGTGCCTGTTTATCT
AAAAC

Protein sequence

Show/hide protein sequence

MAMESKKRNRKPLSDCTNIVLSSQSPASNFSAAIKSRKRVIKSVVKEVVNDEKKRESSFASASTSVDLQANPSFEFLPAEPNPSSCSLPIEASTPLRRTDLPSCSGTDHV
SEPKSFYSRRNPTNKRKSVEITDAPFVFSTASKVETRVEKKDGYSSPSKAKTVPYRKRQRSSIYGDDECEFVLPREFVEQQKAYFSEVDAFELPMEEAKSSDSE

Sed0024289 (gene) of Chayote v1 genome