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Sed0024301 (gene) of Chayote v1 genome

Gene IDSed0024301
OrganismSechium edule (Chayote v1)
DescriptionTetratricopeptide-like helical
Genome locationLG07:17855834..17856199
RNA-Seq ExpressionSed0024301
SyntenySed0024301
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6577295.1 hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia]1.2e-2151.97Show/hide
Query:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-VTSTM----FPASGF---CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCV
        MSVSLEALAMAGI  NEW +DA+EW R+ +  +D+PPHLLADEDDDDD VTST+    FP +GF    R++D G   ++C   I+C  S  +EK+  N +
Subjt:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-VTSTM----FPASGF---CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCV

Query:  SSVRTMARAILGFFMVMTIKKITSKGS
        SSVR + R ILGF +V  +K I++  S
Subjt:  SSVRTMARAILGFFMVMTIKKITSKGS

KAG6600647.1 hypothetical protein SDJN03_05880, partial [Cucurbita argyrosperma subsp. sororia]1.8e-2557.38Show/hide
Query:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-FCRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMA
        MSVSLEALAMAGID NE  +DA+EW R+ +   +IPPHLLADED+++D  ST FPA+   C +KD+G GGV CSP IM H     EK+ LNC+SS+  + 
Subjt:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-FCRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMA

Query:  RAILGFFMVMTIKKITSKGSQS
         A++GF M MTIK I SK S+S
Subjt:  RAILGFFMVMTIKKITSKGSQS

KAG7015383.1 hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma]3.4e-2151.18Show/hide
Query:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-VTSTM----FPASGF---CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCV
        MSVSLEALAMAGI  NEW +DA+EW R+ +  +D+PPHLLADEDDDDD VTST+    FP +GF     ++D G   ++C   I+C  S  +EK+  N +
Subjt:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-VTSTM----FPASGF---CRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCV

Query:  SSVRTMARAILGFFMVMTIKKITSKGS
        SSVR + R ILGF +V  +K I++  S
Subjt:  SSVRTMARAILGFFMVMTIKKITSKGS

TYK16880.1 Tetratricopeptide-like helical [Cucumis melo var. makuwa]6.7e-1748.87Show/hide
Query:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPASGFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKK
        MSVSLEALAMAGID NEWG+DA EW R  +  D +PPHLLADE+DD+D   VTST+   S +C          R++D    G      I    S  IEK+
Subjt:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPASGFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKK

Query:  VLNCVSSVRTMARAILGFFMVMTIKKITSKGSQ
          N ++SVR + R ILGF MVMT+K I+++ S+
Subjt:  VLNCVSSVRTMARAILGFFMVMTIKKITSKGSQ

XP_022943015.1 uncharacterized protein LOC111447880 [Cucurbita moschata]1.0e-2860.66Show/hide
Query:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-FCRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMA
        MSVSLEALAMAGID NEW +DA+EW R+ +   DIPPHLLADEDD++D  ST FPA+   C +KDDG GGV CSP IM H     EK+ LNC+SS+  + 
Subjt:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-FCRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMA

Query:  RAILGFFMVMTIKKITSKGSQS
         A++GF M MTIK I SK S+S
Subjt:  RAILGFFMVMTIKKITSKGSQS

TrEMBL top hitse value%identityAlignment
A0A0A0KU90 Uncharacterized protein1.0e-0753.62Show/hide
Query:  MSVSLEALAMAGIDHNEWGVDADEW---GRSIDSNDDIPPHLLADEDDDDDVTSTMFPASGFCRQKDDG
        M VSLEALAMAGID NEW +DA+EW      ++++D IPPHLLADE D++++ +     SG   +KDDG
Subjt:  MSVSLEALAMAGIDHNEWGVDADEW---GRSIDSNDDIPPHLLADEDDDDDVTSTMFPASGFCRQKDDG

A0A0A0KWE7 Uncharacterized protein5.0e-1850.37Show/hide
Query:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-----VTSTM----FPASGFCRQ------KDDGGGGVYCSPVIMCHFSIDIE
        MSVSLEALAMAGID NEW +DA+EW R  +  D +PPHLLADE+DD+D      TST+    FP  G          K DGG G +    I C  S  IE
Subjt:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD-----VTSTM----FPASGFCRQ------KDDGGGGVYCSPVIMCHFSIDIE

Query:  KKVLNCVSSVRTMARAILGFFMVMTIKKITSKGSQ
        K+  N +SSVR + R ILGF MVMT+K I+++ S+
Subjt:  KKVLNCVSSVRTMARAILGFFMVMTIKKITSKGSQ

A0A5A7TS68 Tetratricopeptide-like helical4.7e-1650.41Show/hide
Query:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPASGFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKK
        MSVSLEALAMAGID NEWG+DA EW R  +  D +PPHLLADE+DD+D   VTST+   S +C          R++D    G +    I    S  IEK+
Subjt:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPASGFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKK

Query:  VLNCVSSVRTMARAILGFFMVMT
          N ++SVR + R ILGF MVMT
Subjt:  VLNCVSSVRTMARAILGFFMVMT

A0A5D3CZU0 Tetratricopeptide-like helical3.2e-1748.87Show/hide
Query:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPASGFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKK
        MSVSLEALAMAGID NEWG+DA EW R  +  D +PPHLLADE+DD+D   VTST+   S +C          R++D    G      I    S  IEK+
Subjt:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDD---VTSTMFPASGFC----------RQKDDGGGGVYCSPVIMCHFSIDIEKK

Query:  VLNCVSSVRTMARAILGFFMVMTIKKITSKGSQ
          N ++SVR + R ILGF MVMT+K I+++ S+
Subjt:  VLNCVSSVRTMARAILGFFMVMTIKKITSKGSQ

A0A6J1FX98 uncharacterized protein LOC1114478804.8e-2960.66Show/hide
Query:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-FCRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMA
        MSVSLEALAMAGID NEW +DA+EW R+ +   DIPPHLLADEDD++D  ST FPA+   C +KDDG GGV CSP IM H     EK+ LNC+SS+  + 
Subjt:  MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASG-FCRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMA

Query:  RAILGFFMVMTIKKITSKGSQS
         A++GF M MTIK I SK S+S
Subjt:  RAILGFFMVMTIKKITSKGSQS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATTGATCACAATGAGTGGGGTGTGGATGCCGATGAATGGGGAAGGAGTATTGATTCCAACGACGACATTCCCCC
GCATTTATTAGCCGATGAAGACGACGACGATGATGTAACAAGTACTATGTTTCCAGCCTCCGGATTCTGCCGCCAGAAAGATGACGGTGGTGGTGGAGTGTACTGCTCTC
CGGTGATCATGTGCCATTTCAGTATAGATATAGAGAAAAAAGTTTTGAATTGCGTGAGCTCAGTACGAACAATGGCTAGAGCTATTTTAGGGTTCTTTATGGTGATGACC
ATAAAGAAAATAACTTCAAAAGGATCCCAATCCTAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGTTTCTCTAGAAGCTTTGGCAATGGCGGGGATTGATCACAATGAGTGGGGTGTGGATGCCGATGAATGGGGAAGGAGTATTGATTCCAACGACGACATTCCCCC
GCATTTATTAGCCGATGAAGACGACGACGATGATGTAACAAGTACTATGTTTCCAGCCTCCGGATTCTGCCGCCAGAAAGATGACGGTGGTGGTGGAGTGTACTGCTCTC
CGGTGATCATGTGCCATTTCAGTATAGATATAGAGAAAAAAGTTTTGAATTGCGTGAGCTCAGTACGAACAATGGCTAGAGCTATTTTAGGGTTCTTTATGGTGATGACC
ATAAAGAAAATAACTTCAAAAGGATCCCAATCCTAA
Protein sequenceShow/hide protein sequence
MSVSLEALAMAGIDHNEWGVDADEWGRSIDSNDDIPPHLLADEDDDDDVTSTMFPASGFCRQKDDGGGGVYCSPVIMCHFSIDIEKKVLNCVSSVRTMARAILGFFMVMT
IKKITSKGSQS