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Sed0024321 (gene) of Chayote v1 genome

Gene IDSed0024321
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein
Genome locationLG05:9895806..9896515
RNA-Seq ExpressionSed0024321
SyntenySed0024321
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048778.1 retrotransposon protein [Cucumis melo var. makuwa]3.0e-0626.67Show/hide
Query:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGI
        +++ F+N++ SHP AKGLLNKPFPY D+L+ VF  D                     V    IE  A++GS + GG  D F                +G 
Subjt:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGI

Query:  KRKRSNIDDILQKAVDVQRAALEQMLALQQDW----AYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLI
        KRKR +  D   KA+ +      + L    +W      +    + E  + + +++  T   K L+   L    D +  F+ M  +  E +C  L+
Subjt:  KRKRSNIDDILQKAVDVQRAALEQMLALQQDW----AYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLI

XP_010677760.1 PREDICTED: uncharacterized protein At2g29880-like [Beta vulgaris subsp. vulgaris]1.2e-0525.76Show/hide
Query:  FENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAA-------EHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQP
        ++ ++ SH NA GL NKPFP+ D+L  +F  D A        H +    D  E     Q V +  +E++         G     P PS+ PS  R     
Subjt:  FENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAA-------EHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQP

Query:  NGIKRKRSNIDDILQKAVDVQRAALEQMLALQQDWAYSME--RKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPE-WHESYCADLIL
                     L+K  DV  AA E +  L   + +  +   ++M+V   V ++ G T     L+  ++ LN  +V +F ++  E +  +Y   L+L
Subjt:  NGIKRKRSNIDDILQKAVDVQRAALEQMLALQQDWAYSME--RKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPE-WHESYCADLIL

XP_022158565.1 uncharacterized protein LOC111025018 [Momordica charantia]6.8e-0625.73Show/hide
Query:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIE-------DVAELGSGDAGGEDDAFPTPSSRPSLSRQ
        +++ F++++ SHPNAKGL NKP P+ D L++ F  D A  +  +      ++    + ++A  E       D     + +   E+D   TP+S+P++   
Subjt:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIE-------DVAELGSGDAGGEDDAFPTPSSRPSLSRQ

Query:  NNQPNGIKRKR----SNIDDILQKAVDVQRAALEQMLALQQDWAYSMERKQME----VMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHES
        +    G KRKR    S + D+++  + +Q A LE+M      W    E K++     V  ++ Q+     N    +   L  N  K   FL +  E+ + 
Subjt:  NNQPNGIKRKR----SNIDDILQKAVDVQRAALEQMLALQQDWAYSMERKQME----VMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHES

Query:  YCADLI
        +C  L+
Subjt:  YCADLI

XP_024022021.1 uncharacterized protein LOC112091787 [Morus notabilis]2.7e-0727.32Show/hide
Query:  MDRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNG
        +++D F+ ++ SHP+AKGL NKPFPY D+L +VF +D A        +   A  +  +V +   E V +L        D+   T S      +  + P  
Subjt:  MDRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNG

Query:  I---KRKRSNIDDILQKAV--------DVQRAALEQMLALQQDWAYSME--RKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESY
        +   KRKRS   D+L  A+        D+   A E +  L   + Y  +   ++M+V   V ++ G T  Q+  +   L  N D   YF  +  E+   +
Subjt:  I---KRKRSNIDDILQKAV--------DVQRAALEQMLALQQDWAYSME--RKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESY

Query:  CADLI
           L+
Subjt:  CADLI

XP_038887234.1 uncharacterized protein LOC120077425 [Benincasa hispida]2.5e-0830.65Show/hide
Query:  MDRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEA-TPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPN
        ++R+ F+ ++ SHPNAKG+  KPFP+ D LS VF  D A+    ++ +V +  +P+    Q+   E+ AE  +G A     + PT SSR           
Subjt:  MDRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEA-TPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPN

Query:  GIKRKRSNID----DILQKAVDVQRAALEQMLALQQDWAYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLILR
        G KRKRS+      DI++  V++Q   + + LA  Q+  Y +E K  EV+  +  +    EN +  + D +  +  K   FL +     + YC  L+ R
Subjt:  GIKRKRSNID----DILQKAVDVQRAALEQMLALQQDWAYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLILR

TrEMBL top hitse value%identityAlignment
A0A5A7SXI6 Retrotransposon protein1.2e-0525.69Show/hide
Query:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAF-------------------
        +++ F+N++ SHP AKGLLNKPFPY D+L+ VF  D A                         E  A++GS + GG  D F                   
Subjt:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAF-------------------

Query:  ---PTPSSRPS-LSRQNNQPNGIKRKRSNIDDILQKAVDVQRAALEQMLALQQDW----AYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVT
              +SRPS  S      +G KRKR +  D   KA+ +      + L    +W      +    +ME  + + ++   T   + L+   L    D + 
Subjt:  ---PTPSSRPS-LSRQNNQPNGIKRKRSNIDDILQKAVDVQRAALEQMLALQQDW----AYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVT

Query:  YFLNMKPEWHESYCADLI
         F+ M  +  E +C  L+
Subjt:  YFLNMKPEWHESYCADLI

A0A5A7T4C3 Retrotransposon protein1.2e-0525.13Show/hide
Query:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGI
        +++ F+N++ SHP  KGLLNKPFPY D+L+ VF  D A                     +   E  A++GS +  GE D F                +G 
Subjt:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGI

Query:  KRKRSNIDDILQKAVDVQRAALEQMLALQQDW-AYSM---ERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLI
        KRKR +  D   +A+ +      + L    +W A+++      + E  + + ++   T   + L+   L    D +  F+ M  +  E +C  L+
Subjt:  KRKRSNIDDILQKAVDVQRAALEQMLALQQDW-AYSM---ERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLI

A0A5A7U0P0 Retrotransposon protein1.5e-0626.67Show/hide
Query:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGI
        +++ F+N++ SHP AKGLLNKPFPY D+L+ VF  D                     V    IE  A++GS + GG  D F                +G 
Subjt:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGI

Query:  KRKRSNIDDILQKAVDVQRAALEQMLALQQDW----AYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLI
        KRKR +  D   KA+ +      + L    +W      +    + E  + + +++  T   K L+   L    D +  F+ M  +  E +C  L+
Subjt:  KRKRSNIDDILQKAVDVQRAALEQMLALQQDW----AYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLI

A0A5A7UFK7 Retrotransposon protein2.8e-0525.23Show/hide
Query:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAF-------------------
        +++ F+N++ SHP AKGLLNKPFPY D+L+ VF  D A                         E  A++GS + GG  D F                   
Subjt:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAF-------------------

Query:  ---PTPSSRPS-LSRQNNQPNGIKRKRSNIDDILQKAVDVQRAALEQMLALQQDWAYSM----ERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVT
              +SRPS  S    + +G KRKR +  D   +A+ +      + L    +W  S        + E  + + ++   T   + L+   L    D + 
Subjt:  ---PTPSSRPS-LSRQNNQPNGIKRKRSNIDDILQKAVDVQRAALEQMLALQQDWAYSM----ERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVT

Query:  YFLNMKPEWHESYCADLI
         F+ M  +  E +C  L+
Subjt:  YFLNMKPEWHESYCADLI

A0A6J1DW73 uncharacterized protein LOC1110250183.3e-0625.73Show/hide
Query:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIE-------DVAELGSGDAGGEDDAFPTPSSRPSLSRQ
        +++ F++++ SHPNAKGL NKP P+ D L++ F  D A  +  +      ++    + ++A  E       D     + +   E+D   TP+S+P++   
Subjt:  DRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIE-------DVAELGSGDAGGEDDAFPTPSSRPSLSRQ

Query:  NNQPNGIKRKR----SNIDDILQKAVDVQRAALEQMLALQQDWAYSMERKQME----VMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHES
        +    G KRKR    S + D+++  + +Q A LE+M      W    E K++     V  ++ Q+     N    +   L  N  K   FL +  E+ + 
Subjt:  NNQPNGIKRKR----SNIDDILQKAVDVQRAALEQMLALQQDWAYSMERKQME----VMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHES

Query:  YCADLI
        +C  L+
Subjt:  YCADLI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCGCGACACCTTTGAGAATTATCTCTTGAGTCATCCGAATGCAAAAGGGCTTTTGAACAAGCCGTTTCCCTACATGGACCAATTGTCCATCGTCTTCAATTCAGA
TGCTGCCGAGCATAGTTTATTCAACTCTAATGATGTACATGAAGCAACTCCGATAAGGCAGGTGGTGCAGGAGGCCAAAATAGAAGACGTGGCTGAACTCGGATCGGGGG
ATGCTGGTGGTGAGGATGACGCGTTCCCAACTCCGTCATCAAGACCTAGTCTTTCTAGGCAGAACAATCAACCCAATGGGATTAAGAGGAAAAGAAGTAACATAGATGAC
ATTCTACAGAAAGCTGTAGACGTTCAACGAGCTGCATTGGAGCAGATGCTCGCATTGCAGCAAGATTGGGCCTATTCGATGGAAAGAAAACAAATGGAAGTCATGCAACG
AGTAGACCAACTTGTTGGATTCACAGAGAATCAAAAACGACTAATATGTGACGAACTATGCCTAAATAGAGACAAGGTCACTTACTTCCTGAATATGAAACCTGAATGGC
ACGAATCGTACTGCGCTGACCTGATCCTCAGAATTAATGCTCGCGGTCCTGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCGCGACACCTTTGAGAATTATCTCTTGAGTCATCCGAATGCAAAAGGGCTTTTGAACAAGCCGTTTCCCTACATGGACCAATTGTCCATCGTCTTCAATTCAGA
TGCTGCCGAGCATAGTTTATTCAACTCTAATGATGTACATGAAGCAACTCCGATAAGGCAGGTGGTGCAGGAGGCCAAAATAGAAGACGTGGCTGAACTCGGATCGGGGG
ATGCTGGTGGTGAGGATGACGCGTTCCCAACTCCGTCATCAAGACCTAGTCTTTCTAGGCAGAACAATCAACCCAATGGGATTAAGAGGAAAAGAAGTAACATAGATGAC
ATTCTACAGAAAGCTGTAGACGTTCAACGAGCTGCATTGGAGCAGATGCTCGCATTGCAGCAAGATTGGGCCTATTCGATGGAAAGAAAACAAATGGAAGTCATGCAACG
AGTAGACCAACTTGTTGGATTCACAGAGAATCAAAAACGACTAATATGTGACGAACTATGCCTAAATAGAGACAAGGTCACTTACTTCCTGAATATGAAACCTGAATGGC
ACGAATCGTACTGCGCTGACCTGATCCTCAGAATTAATGCTCGCGGTCCTGGATGA
Protein sequenceShow/hide protein sequence
MDRDTFENYLLSHPNAKGLLNKPFPYMDQLSIVFNSDAAEHSLFNSNDVHEATPIRQVVQEAKIEDVAELGSGDAGGEDDAFPTPSSRPSLSRQNNQPNGIKRKRSNIDD
ILQKAVDVQRAALEQMLALQQDWAYSMERKQMEVMQRVDQLVGFTENQKRLICDELCLNRDKVTYFLNMKPEWHESYCADLILRINARGPG