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Sed0024332 (gene) of Chayote v1 genome

Gene IDSed0024332
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG11:5175021..5185479
RNA-Seq ExpressionSed0024332
SyntenySed0024332
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
BAS74010.1 Os01g0714300 [Oryza sativa Japonica Group]2.8e-1129.54Show/hide
Query:  MGKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGEGVPFPFGEELREPLSFFRGDRGQAVDHEMGGRGRG
        +G+FLR+K+ +DIR+PL R + +  G   +  W  + YE LP+FC  CG IGH+ K C   V+   +P PF ++LR   S  R D G       G RG G
Subjt:  MGKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGEGVPFPFGEELREPLSFFRGDRGQAVDHEMGGRGRG

Query:  RGRGYGWRQTTQNLRDEMGGNDIHHRREEWVRQPEPLPEKVKGCNNGSPATNSVGKEASASCQNQSQKGEVEVQRREPARASGHTRDLLELEILQKVIAE
             GWR  +   R+  GG+                     G  +GS     VG+E   S         ++V  +   R +     +LE E+   V+ +
Subjt:  RGRGYGWRQTTQNLRDEMGGNDIHHRREEWVRQPEPLPEKVKGCNNGSPATNSVGKEASASCQNQSQKGEVEVQRREPARASGHTRDLLELEILQKVIAE

Query:  SAKEAGSGSNGLQRVEDKVGNGQKGENGAKIVSEPIVMDISTGMENFKEGVGP--GSFKEDLGDGHR-SRCKTSIDKKGKG
            A   S+G      +  +G K E+G+ IV+E  VM     M+N   GVG   G  +E  G+     R K     +G+G
Subjt:  SAKEAGSGSNGLQRVEDKVGNGQKGENGAKIVSEPIVMDISTGMENFKEGVGP--GSFKEDLGDGHR-SRCKTSIDKKGKG

TXG57113.1 hypothetical protein EZV62_018426 [Acer yangbiense]2.4e-1044.58Show/hide
Query:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC----SFVVIGEGVPFPFGEELREPLS
        GKF+R+KV IDI +PL+R +++K G   E   V + YE+LPEFC  CG+IGH +K+C    +     EG P  FG  L+ P++
Subjt:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC----SFVVIGEGVPFPFGEELREPLS

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]5.6e-1238.3Show/hide
Query:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCS--FVVIGEGVPFPFGEELREPL-----------SFFRGDRGQ
        G F+R++V ID+ +PLRR IK+K+    ++ W  + YEKLP+FC  CG+IGHS ++C     V+    P  +G+ LR  L            F+RG R  
Subjt:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCS--FVVIGEGVPFPFGEELREPL-----------SFFRGDRGQ

Query:  AVDHEMGGRGRGRGRGYGWRQTTQNLRDEMGGNDIHHRREE
              GGRG   GRG  WR+  +N RD  G    H R  E
Subjt:  AVDHEMGGRGRGRGRGYGWRQTTQNLRDEMGGNDIHHRREE

XP_039815364.1 uncharacterized protein LOC120678302 [Panicum virgatum]5.1e-1329.04Show/hide
Query:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGEGVPFPFGEELR--EPLSFFRGDRGQAVDHEMGGRGR
        G+FLR+KV I+I +PLRR I I  G  A+E+W  I+YE LP+FC  CGRIGH+ K C    +  G   PFG ELR   P   F G+  ++ ++   G GR
Subjt:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGEGVPFPFGEELR--EPLSFFRGDRGQAVDHEMGGRGR

Query:  -----------GRGRGYGWRQTTQNL---RDEMGGNDIHHRREEWVRQPEPLP--------EKVKGCNNGSPATNSVGKEASASCQNQSQKGEVEVQRRE
                     GRG G R  +  L   +D+MG        EE V  P  +         +K K C   + A  S  ++ +A+    S K E + Q+ +
Subjt:  -----------GRGRGYGWRQTTQNL---RDEMGGNDIHHRREEWVRQPEPLP--------EKVKGCNNGSPATNSVGKEASASCQNQSQKGEVEVQRRE

Query:  PARASGHTRDLLELEILQKVIAESAKEA----GSGSNGLQRVEDKVGNGQKGENGAKIVSEPIVMDISTGMENFKEGVGPGSFKEDLGDGHRSRCKTSID
           A            ++KV+  S K +     S     Q ++ +    ++   G+K   E     +  G  N   G+      E+L  G R +  +++ 
Subjt:  PARASGHTRDLLELEILQKVIAESAKEA----GSGSNGLQRVEDKVGNGQKGENGAKIVSEPIVMDISTGMENFKEGVGPGSFKEDLGDGHRSRCKTSID

Query:  KKG
        K+G
Subjt:  KKG

XP_039827601.1 uncharacterized protein LOC120689378 [Panicum virgatum]1.5e-1233.48Show/hide
Query:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGEGVPFPFGEELR--EPLSFFRGDRGQAVDHEMGGRGR
        G+FLR+KV I+I +PLRR I I  G  A+E+W  I+YE LP+FC  CGRIGH+ K C   +  E    PFG ELR   P   F G+  ++ ++   G GR
Subjt:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGEGVPFPFGEELR--EPLSFFRGDRGQAVDHEMGGRGR

Query:  -----------GRGRGYGWRQTTQNL---RDEMGGNDIHHRREEWVRQPEPLP--------EKVKGCNNGSPATNSVGKEASASCQNQSQKGEVEVQRRE
                     GRG G R  +  L   +D+MG        EE V  P  +         +K K C   + A  S  ++ +A+    S K E + Q+ +
Subjt:  -----------GRGRGYGWRQTTQNL---RDEMGGNDIHHRREEWVRQPEPLP--------EKVKGCNNGSPATNSVGKEASASCQNQSQKGEVEVQRRE

Query:  PARA------SGHTRDLLELE
           A       G T   ++LE
Subjt:  PARA------SGHTRDLLELE

TrEMBL top hitse value%identityAlignment
A0A0P0V7D8 Os01g0714300 protein1.4e-1129.54Show/hide
Query:  MGKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGEGVPFPFGEELREPLSFFRGDRGQAVDHEMGGRGRG
        +G+FLR+K+ +DIR+PL R + +  G   +  W  + YE LP+FC  CG IGH+ K C   V+   +P PF ++LR   S  R D G       G RG G
Subjt:  MGKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGEGVPFPFGEELREPLSFFRGDRGQAVDHEMGGRGRG

Query:  RGRGYGWRQTTQNLRDEMGGNDIHHRREEWVRQPEPLPEKVKGCNNGSPATNSVGKEASASCQNQSQKGEVEVQRREPARASGHTRDLLELEILQKVIAE
             GWR  +   R+  GG+                     G  +GS     VG+E   S         ++V  +   R +     +LE E+   V+ +
Subjt:  RGRGYGWRQTTQNLRDEMGGNDIHHRREEWVRQPEPLPEKVKGCNNGSPATNSVGKEASASCQNQSQKGEVEVQRREPARASGHTRDLLELEILQKVIAE

Query:  SAKEAGSGSNGLQRVEDKVGNGQKGENGAKIVSEPIVMDISTGMENFKEGVGP--GSFKEDLGDGHR-SRCKTSIDKKGKG
            A   S+G      +  +G K E+G+ IV+E  VM     M+N   GVG   G  +E  G+     R K     +G+G
Subjt:  SAKEAGSGSNGLQRVEDKVGNGQKGENGAKIVSEPIVMDISTGMENFKEGVGP--GSFKEDLGDGHR-SRCKTSIDKKGKG

A0A5C7H399 CCHC-type domain-containing protein5.7e-1042.98Show/hide
Query:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGE-GVPFPFGEELREPLSFFRGDRGQAVDHEMGGRG-R
        GKF+R+KV+IDI +PL+R +K+KSGT  E   V + YE+L  FC  CGRIGH +K+C   V  + G P  FG  L+   S F   R +      GG   R
Subjt:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGE-GVPFPFGEELREPLSFFRGDRGQAVDHEMGGRG-R

Query:  GRGRGYGWRQTTQN
         R  G   R TT++
Subjt:  GRGRGYGWRQTTQN

A0A5C7HJ97 CCHC-type domain-containing protein1.1e-1044.58Show/hide
Query:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC----SFVVIGEGVPFPFGEELREPLS
        GKF+R+KV IDI +PL+R +++K G   E   V + YE+LPEFC  CG+IGH +K+C    +     EG P  FG  L+ P++
Subjt:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKC----SFVVIGEGVPFPFGEELREPLS

A0A5C7IWT1 CCHC-type domain-containing protein7.4e-1042.68Show/hide
Query:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIG----EGVPFPFGEELREPL
        GK++R+KV IDI +PL+R ++ K G   E   V + YE+LP+FC  CGRIGH +K+C   V      +G P  +G  L+ P+
Subjt:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIG----EGVPFPFGEELREPL

A0A6J1D765 uncharacterized protein LOC1110179022.7e-1238.3Show/hide
Query:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCS--FVVIGEGVPFPFGEELREPL-----------SFFRGDRGQ
        G F+R++V ID+ +PLRR IK+K+    ++ W  + YEKLP+FC  CG+IGHS ++C     V+    P  +G+ LR  L            F+RG R  
Subjt:  GKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCS--FVVIGEGVPFPFGEELREPL-----------SFFRGDRGQ

Query:  AVDHEMGGRGRGRGRGYGWRQTTQNLRDEMGGNDIHHRREE
              GGRG   GRG  WR+  +N RD  G    H R  E
Subjt:  AVDHEMGGRGRGRGRGYGWRQTTQNLRDEMGGNDIHHRREE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAAGTTCCTAAGATTGAAGGTGAATATTGATATTAGGCAACCATTAAGGAGAGCTATAAAAATTAAGAGTGGTACCATGGCTGAGGAGAAATGGGTTAGAATATC
CTATGAGAAGCTTCCTGAATTCTGTTCAGGCTGTGGGAGAATTGGTCACTCAGTTAAAAAATGCAGCTTCGTGGTGATTGGGGAAGGAGTCCCGTTTCCTTTTGGTGAGG
AGCTCCGTGAACCTCTGAGCTTCTTCAGAGGGGATCGTGGTCAGGCGGTTGACCATGAGATGGGAGGTCGAGGGAGAGGAAGAGGAAGGGGCTATGGTTGGAGGCAGACA
ACACAAAATCTTCGAGATGAAATGGGGGGGAACGATATTCATCACAGACGTGAGGAGTGGGTTCGTCAGCCGGAGCCCTTGCCGGAGAAGGTTAAAGGGTGTAATAACGG
CTCACCGGCGACGAATTCCGTGGGGAAGGAAGCTTCGGCGTCCTGTCAAAATCAAAGTCAGAAGGGGGAGGTGGAGGTGCAGAGAAGAGAGCCAGCCAGGGCTTCAGGTC
ATACGAGGGATTTATTGGAATTGGAAATATTGCAGAAAGTTATCGCTGAGTCGGCTAAAGAAGCAGGGAGTGGGTCTAATGGGCTTCAACGAGTTGAGGATAAGGTGGGT
AATGGTCAGAAGGGGGAAAATGGGGCAAAAATCGTTAGTGAGCCAATTGTAATGGATATTTCAACAGGGATGGAGAATTTTAAAGAGGGTGTTGGGCCAGGTAGTTTTAA
AGAAGATTTGGGAGATGGCCATCGTAGTAGATGTAAGACAAGTATTGATAAAAAGGGAAAGGGGATTTGTATAGATGCTGAGACATATGGGTTCGAGGAGCAGACGACGC
TAAAAAAGTTTGAGGTTATAGCGGTTAAGGAATCGAATGGGAATGTTAAGGTCGATAATAAAGAAATCTCTAAAAGGGAAGTGGAAGTTGAGCCCGTCATTAAGGATCAG
CCGCTATCTTTAGTGGCGGGTCATGGGACGGAAGTTTTGAGAACGAAGACGGGTGGGGGGAAATGGAAGCGTAGAGCAAGGCTTGGAGGTAGTGAAGATTGCTCCCAGAA
TGAGGAGGGGAGAGCTGGCTTACCAAGGGGCCCTGGCCTTGTGCTAGGTGGAGCCAACCGAGAGCGATCGGGACTCATTCACATATGGTGGCACAATGGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAAGTTCCTAAGATTGAAGGTGAATATTGATATTAGGCAACCATTAAGGAGAGCTATAAAAATTAAGAGTGGTACCATGGCTGAGGAGAAATGGGTTAGAATATC
CTATGAGAAGCTTCCTGAATTCTGTTCAGGCTGTGGGAGAATTGGTCACTCAGTTAAAAAATGCAGCTTCGTGGTGATTGGGGAAGGAGTCCCGTTTCCTTTTGGTGAGG
AGCTCCGTGAACCTCTGAGCTTCTTCAGAGGGGATCGTGGTCAGGCGGTTGACCATGAGATGGGAGGTCGAGGGAGAGGAAGAGGAAGGGGCTATGGTTGGAGGCAGACA
ACACAAAATCTTCGAGATGAAATGGGGGGGAACGATATTCATCACAGACGTGAGGAGTGGGTTCGTCAGCCGGAGCCCTTGCCGGAGAAGGTTAAAGGGTGTAATAACGG
CTCACCGGCGACGAATTCCGTGGGGAAGGAAGCTTCGGCGTCCTGTCAAAATCAAAGTCAGAAGGGGGAGGTGGAGGTGCAGAGAAGAGAGCCAGCCAGGGCTTCAGGTC
ATACGAGGGATTTATTGGAATTGGAAATATTGCAGAAAGTTATCGCTGAGTCGGCTAAAGAAGCAGGGAGTGGGTCTAATGGGCTTCAACGAGTTGAGGATAAGGTGGGT
AATGGTCAGAAGGGGGAAAATGGGGCAAAAATCGTTAGTGAGCCAATTGTAATGGATATTTCAACAGGGATGGAGAATTTTAAAGAGGGTGTTGGGCCAGGTAGTTTTAA
AGAAGATTTGGGAGATGGCCATCGTAGTAGATGTAAGACAAGTATTGATAAAAAGGGAAAGGGGATTTGTATAGATGCTGAGACATATGGGTTCGAGGAGCAGACGACGC
TAAAAAAGTTTGAGGTTATAGCGGTTAAGGAATCGAATGGGAATGTTAAGGTCGATAATAAAGAAATCTCTAAAAGGGAAGTGGAAGTTGAGCCCGTCATTAAGGATCAG
CCGCTATCTTTAGTGGCGGGTCATGGGACGGAAGTTTTGAGAACGAAGACGGGTGGGGGGAAATGGAAGCGTAGAGCAAGGCTTGGAGGTAGTGAAGATTGCTCCCAGAA
TGAGGAGGGGAGAGCTGGCTTACCAAGGGGCCCTGGCCTTGTGCTAGGTGGAGCCAACCGAGAGCGATCGGGACTCATTCACATATGGTGGCACAATGGATGA
Protein sequenceShow/hide protein sequence
MGKFLRLKVNIDIRQPLRRAIKIKSGTMAEEKWVRISYEKLPEFCSGCGRIGHSVKKCSFVVIGEGVPFPFGEELREPLSFFRGDRGQAVDHEMGGRGRGRGRGYGWRQT
TQNLRDEMGGNDIHHRREEWVRQPEPLPEKVKGCNNGSPATNSVGKEASASCQNQSQKGEVEVQRREPARASGHTRDLLELEILQKVIAESAKEAGSGSNGLQRVEDKVG
NGQKGENGAKIVSEPIVMDISTGMENFKEGVGPGSFKEDLGDGHRSRCKTSIDKKGKGICIDAETYGFEEQTTLKKFEVIAVKESNGNVKVDNKEISKREVEVEPVIKDQ
PLSLVAGHGTEVLRTKTGGGKWKRRARLGGSEDCSQNEEGRAGLPRGPGLVLGGANRERSGLIHIWWHNG