; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0024336 (gene) of Chayote v1 genome

Gene IDSed0024336
OrganismSechium edule (Chayote v1)
Descriptionprotein RDM1-like
Genome locationLG02:49668699..49669374
RNA-Seq ExpressionSed0024336
SyntenySed0024336
Gene Ontology termsGO:0044030 - regulation of DNA methylation (biological process)
GO:0000419 - RNA polymerase V complex (cellular component)
InterPro domainsIPR015270 - Protein RDM1, plant
IPR036319 - RDM1 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6582316.1 Protein RDM1, partial [Cucurbita argyrosperma subsp. sororia]1.2e-8893.68Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G Q+DGFEFKPS+D+FKIPA EMT+EGML KRAEMYQEYMKQ+ IPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_022955802.1 protein RDM1 [Cucurbita moschata]1.2e-8893.68Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G Q+DGFEFKPS+D+FKIPA EMT+EGML KRAEMYQEYMKQ+ IPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_022979547.1 protein RDM1-like [Cucurbita maxima]9.4e-8993.68Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G Q+DGFEFKPS+D+FKIPA EMT+EGML KRAEMYQEYMKQ+ IPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_023527197.1 protein RDM1 [Cucurbita pepo subsp. pepo]2.7e-8893.68Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G Q+DGFEFKPSID+FKIPA EMT+EG L KRAEMYQEYMKQ+ IPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
XP_038877941.1 protein RDM1 [Benincasa hispida]4.2e-8994.25Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G Q+DGFEFKPS+D+FKIPA EMTSEGML KRAEMYQEYMKQ+ IPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
TrEMBL top hitse value%identityAlignment
A0A1S3AWI8 protein RDM13.3e-8791.95Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE   Q+DG+EFKPS+D+FKIPA EMTSEGML KRAEMYQEYMKQ+ IPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLR GS DEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A6J1GHM4 protein RDM1-like3.3e-8792.53Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEI-GQSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEI GQ+DGFEFKPSID+FKIPA EMTSEGML KRAEMYQEYMKQ+PIPA RGSVIPF TWMGLGKSIKQLY QPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEI-GQSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A6J1GV10 protein RDM15.9e-8993.68Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G Q+DGFEFKPS+D+FKIPA EMT+EGML KRAEMYQEYMKQ+ IPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A6J1IGA1 protein RDM1-like8.6e-8893.1Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEI-GQSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSEI GQ+DGFEFKPSID+FKIPA EMTSE ML KRAEMYQEYMKQ+PIPA RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEI-GQSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNI LKQWDQLRFGSVDEYKPLDT+IHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSD MHE YVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
A0A6J1INZ9 protein RDM1-like4.5e-8993.68Show/hide
Query:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH
        MKRPMPWNEQVDVISSGESSSSDSE G Q+DGFEFKPS+D+FKIPA EMT+EGML KRAEMYQEYMKQ+ IPA+RGSVIPFTTWMGLGKSIKQLYGQPLH
Subjt:  MKRPMPWNEQVDVISSGESSSSDSEIG-QSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLH

Query:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
        YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
Subjt:  YLTNILLKQWDQLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL
SwissProt top hitse value%identityAlignment
Q9LUJ3 Protein RDM12.6e-4959.87Show/hide
Query:  SGESSSSDSEIGQSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFG
        SG+S SSD +   SDG  F P   + +    ++  EG L +RAEMYQ+YMKQVPIP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG
Subjt:  SGESSSSDSEIGQSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFG

Query:  SVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        +  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  SVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
Arabidopsis top hitse value%identityAlignment
AT3G22680.1 RNA-DIRECTED DNA METHYLATION 11.8e-5059.87Show/hide
Query:  SGESSSSDSEIGQSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFG
        SG+S SSD +   SDG  F P   + +    ++  EG L +RAEMYQ+YMKQVPIP  RGS+IPFT+W+GL  S+KQLYGQPLHYLTN+LL++WDQ RFG
Subjt:  SGESSSSDSEIGQSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWDQLRFG

Query:  SVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ
        +  E + LD++IHP+KAEAT+WLVEEIHR T SH H+A LW SDPM+ +++D IFP+
Subjt:  SVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGACCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGCGAATCTTCATCCTCTGATTCAGAAATAGGACAAAGTGATGGATTTGAGTTCAAGCCTTC
CATTGACAATTTCAAAATTCCTGCTATAGAAATGACATCTGAAGGTATGTTGACTAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGGTCCCGATTCCCGCACGCC
GCGGTTCGGTAATACCATTTACAACATGGATGGGACTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACCTGACTAACATTCTTCTCAAACAGTGGGAT
CAATTAAGGTTTGGAAGTGTGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCCGAAGCAACCGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTC
GTCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCATGAAGCGTATGTCGACTCAATTTTCCCCCAACTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGACCAATGCCGTGGAATGAACAAGTAGATGTTATATCATCAGGCGAATCTTCATCCTCTGATTCAGAAATAGGACAAAGTGATGGATTTGAGTTCAAGCCTTC
CATTGACAATTTCAAAATTCCTGCTATAGAAATGACATCTGAAGGTATGTTGACTAAAAGGGCGGAAATGTATCAAGAATACATGAAACAGGTCCCGATTCCCGCACGCC
GCGGTTCGGTAATACCATTTACAACATGGATGGGACTAGGCAAATCTATAAAGCAGCTTTATGGTCAGCCTTTGCATTACCTGACTAACATTCTTCTCAAACAGTGGGAT
CAATTAAGGTTTGGAAGTGTGGATGAATATAAGCCATTGGATACTGTAATTCATCCGAGTAAAGCCGAAGCAACCGTATGGCTGGTTGAAGAGATTCATAGGCGCACCTC
GTCACATCATCATGTTGCTAAACTCTGGTTATCAGACCCAATGCATGAAGCGTATGTCGACTCAATTTTCCCCCAACTATGA
Protein sequenceShow/hide protein sequence
MKRPMPWNEQVDVISSGESSSSDSEIGQSDGFEFKPSIDNFKIPAIEMTSEGMLTKRAEMYQEYMKQVPIPARRGSVIPFTTWMGLGKSIKQLYGQPLHYLTNILLKQWD
QLRFGSVDEYKPLDTVIHPSKAEATVWLVEEIHRRTSSHHHVAKLWLSDPMHEAYVDSIFPQL