; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0024358 (gene) of Chayote v1 genome

Gene IDSed0024358
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG06:10516840..10526421
RNA-Seq ExpressionSed0024358
SyntenySed0024358
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026100.1 uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]5.4e-3244.55Show/hide
Query:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEA
        S+  F+ PPLNQ+L Q+ T+KLDR N+LLWK LALP L+ Y+L GHL GE  CP  F+ +A   N    E  A   +  +S +T RI +   E   +++ 
Subjt:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEA

Query:  TTAS--SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNV
                 +T   A Q+MG     +LW A Q  F     A+ED+LRQ  Q  RKG+ KM +YL +MKT+ DNL   GSP+   +LISQVLLGLDE YN+
Subjt:  TTAS--SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNV

Query:  VV
        V+
Subjt:  VV

KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]1.7e-2239Show/hide
Query:  FNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPNEPTAAGGLMPASGLTRRIASGEGVASSEATTASSAGVT-
        F  P LNQ+L Q+TTIKLDR N+LLWK LALP L++Y+L  HL GE  C PK +     PNE                I    G  S E +++S+A VT 
Subjt:  FNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPNEPTAAGGLMPASGLTRRIASGEGVASSEATTASSAGVT-

Query:  ----------------------RPAAT-QVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLIS
                               P  T Q+MG   A +LW A Q LF     AKED+L QTFQ  +KG+  M +YLR MK + +NL  A S +   +++S
Subjt:  ----------------------RPAAT-QVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLIS

TYJ96311.1 uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa]5.8e-2642.33Show/hide
Query:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEA
        S+  F+ PPLNQ+L Q+ T+KLDR N+LLWK LALP L+ Y+L GHL GE  CP  F+ +A   N    E  A   +  +S +T RI +   E   +++ 
Subjt:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEA

Query:  TTAS--SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQ
                 +T   A Q+MG     +LW A Q  F     A+ED+LRQ  Q  RKG+ KM +YL +MKT+ DNL   GSP+   +LISQ
Subjt:  TTAS--SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQ

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]2.0e-3447.45Show/hide
Query:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPNEPTAAGGLMPASGLTRRIASGEG--VASSEATTAS
        S   F +PPLNQLL QIT+IK+DR NFLLW+NLALP LR+Y+L  +L G+  CPP  L   +  + PT   G   +        + E   V         
Subjt:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPNEPTAAGGLMPASGLTRRIASGEG--VASSEATTAS

Query:  SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNVVV
           +    A QVMG  T+ ELWTA+Q LF     A+ DYL+Q FQQ  KGS +M +YL++MK+HADNL LAGS ++   L+SQVL GLDEEYN +V
Subjt:  SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNVVV

XP_038902487.1 uncharacterized protein LOC120089143 [Benincasa hispida]1.4e-3247.03Show/hide
Query:  TTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKF------LPTAIGPNEPTAAGG-------LMPASGLTRRIASGEGVASS---EATTASSA-
        TTIKLD+ N+LLW+NLALP LR+YRL GHL GED CPP+F          + P +    GG       L P  G+T    S   +  +   E+ T     
Subjt:  TTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKF------LPTAIGPNEPTAAGG-------LMPASGLTRRIASGEGVASS---EATTASSA-

Query:  -------GVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNVV
                +T   A QVMG +    LW AIQ LF     A EDYLRQ FQQ  KG+ KM +YLR+MKTH+DNL L GSP+   +L+SQVLLGLDEE+N  
Subjt:  -------GVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNVV

Query:  VA
        VA
Subjt:  VA

TrEMBL top hitse value%identityAlignment
A0A5A7SIT7 Uncharacterized protein2.6e-3244.55Show/hide
Query:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEA
        S+  F+ PPLNQ+L Q+ T+KLDR N+LLWK LALP L+ Y+L GHL GE  CP  F+ +A   N    E  A   +  +S +T RI +   E   +++ 
Subjt:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEA

Query:  TTAS--SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNV
                 +T   A Q+MG     +LW A Q  F     A+ED+LRQ  Q  RKG+ KM +YL +MKT+ DNL   GSP+   +LISQVLLGLDE YN+
Subjt:  TTAS--SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNV

Query:  VV
        V+
Subjt:  VV

A0A5A7VPY0 Uncharacterized protein8.4e-2339Show/hide
Query:  FNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPNEPTAAGGLMPASGLTRRIASGEGVASSEATTASSAGVT-
        F  P LNQ+L Q+TTIKLDR N+LLWK LALP L++Y+L  HL GE  C PK +     PNE                I    G  S E +++S+A VT 
Subjt:  FNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPNEPTAAGGLMPASGLTRRIASGEGVASSEATTASSAGVT-

Query:  ----------------------RPAAT-QVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLIS
                               P  T Q+MG   A +LW A Q LF     AKED+L QTFQ  +KG+  M +YLR MK + +NL  A S +   +++S
Subjt:  ----------------------RPAAT-QVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLIS

A0A5D3BCH9 Uncharacterized protein2.8e-2642.33Show/hide
Query:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEA
        S+  F+ PPLNQ+L Q+ T+KLDR N+LLWK LALP L+ Y+L GHL GE  CP  F+ +A   N    E  A   +  +S +T RI +   E   +++ 
Subjt:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPN----EPTAAGGLMPASGLTRRIASG--EGVASSEA

Query:  TTAS--SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQ
                 +T   A Q+MG     +LW A Q  F     A+ED+LRQ  Q  RKG+ KM +YL +MKT+ DNL   GSP+   +LISQ
Subjt:  TTAS--SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQ

A0A6J1D5J0 uncharacterized protein LOC1110175014.2e-2267.02Show/hide
Query:  VTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNVVVA
        +T   ATQVMG + A +LW AIQ LF     A+EDYLRQ FQQ RKGS KM D+LR+MK+HADNL  AGSP+   SLISQVLLGLDEEYN VVA
Subjt:  VTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNVVVA

A0A6J1DCW4 uncharacterized protein LOC1110195989.6e-3547.45Show/hide
Query:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPNEPTAAGGLMPASGLTRRIASGEG--VASSEATTAS
        S   F +PPLNQLL QIT+IK+DR NFLLW+NLALP LR+Y+L  +L G+  CPP  L   +  + PT   G   +        + E   V         
Subjt:  SNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPNEPTAAGGLMPASGLTRRIASGEG--VASSEATTAS

Query:  SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNVVV
           +    A QVMG  T+ ELWTA+Q LF     A+ DYL+Q FQQ  KGS +M +YL++MK+HADNL LAGS ++   L+SQVL GLDEEYN +V
Subjt:  SAGVTRPAATQVMGCKTAHELWTAIQTLF-----AKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNVVV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACGCCTATTCAAACCCTAAGTTCAATACACCACCATTAAATCAACTCCTCACTCAAATAACCACCATTAAATTAGATCGTTCTAATTTTCTGTTATGGAAAAA
TTTAGCCCTACCTTTTTTGAGAGCCTATAGGTTAATAGGCCATTTGTGTGGGGAGGATCAATGCCCTCCGAAATTTTTACCCACAGCCATAGGTCCAAATGAACCCACAG
CTGCAGGTGGGTTGATGCCAGCGTCAGGTCTGACGCGCAGAATCGCGTCAGGAGAGGGAGTTGCGTCATCGGAGGCGACCACAGCCTCCTCGGCGGGAGTAACACGGCCA
GCTGCCACACAAGTGATGGGATGCAAAACTGCTCATGAACTTTGGACTGCAATTCAAACTCTCTTTGCTAAGGAGGATTATCTTCGTCAAACTTTTCAACAATACAGAAA
AGGTTCTCAAAAGATGGCTGATTATTTGAGGATCATGAAGACACATGCTGACAACCTAGAGCTTGCTGGGAGTCCGATTACTTTTTGGTCATTAATCTCCCAAGTATTGT
TGGGACTTGATGAAGAGTATAATGTTGTAGTAGCAAACGCATAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACGCCTATTCAAACCCTAAGTTCAATACACCACCATTAAATCAACTCCTCACTCAAATAACCACCATTAAATTAGATCGTTCTAATTTTCTGTTATGGAAAAA
TTTAGCCCTACCTTTTTTGAGAGCCTATAGGTTAATAGGCCATTTGTGTGGGGAGGATCAATGCCCTCCGAAATTTTTACCCACAGCCATAGGTCCAAATGAACCCACAG
CTGCAGGTGGGTTGATGCCAGCGTCAGGTCTGACGCGCAGAATCGCGTCAGGAGAGGGAGTTGCGTCATCGGAGGCGACCACAGCCTCCTCGGCGGGAGTAACACGGCCA
GCTGCCACACAAGTGATGGGATGCAAAACTGCTCATGAACTTTGGACTGCAATTCAAACTCTCTTTGCTAAGGAGGATTATCTTCGTCAAACTTTTCAACAATACAGAAA
AGGTTCTCAAAAGATGGCTGATTATTTGAGGATCATGAAGACACATGCTGACAACCTAGAGCTTGCTGGGAGTCCGATTACTTTTTGGTCATTAATCTCCCAAGTATTGT
TGGGACTTGATGAAGAGTATAATGTTGTAGTAGCAAACGCATAG
Protein sequenceShow/hide protein sequence
MANAYSNPKFNTPPLNQLLTQITTIKLDRSNFLLWKNLALPFLRAYRLIGHLCGEDQCPPKFLPTAIGPNEPTAAGGLMPASGLTRRIASGEGVASSEATTASSAGVTRP
AATQVMGCKTAHELWTAIQTLFAKEDYLRQTFQQYRKGSQKMADYLRIMKTHADNLELAGSPITFWSLISQVLLGLDEEYNVVVANA