; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0024359 (gene) of Chayote v1 genome

Gene IDSed0024359
OrganismSechium edule (Chayote v1)
Descriptionphotosystem I reaction center subunit VI, chloroplastic-like
Genome locationLG06:45359665..45361531
RNA-Seq ExpressionSed0024359
SyntenySed0024359
Gene Ontology termsGO:0015979 - photosynthesis (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0009538 - photosystem I reaction center (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR004928 - Photosystem I PsaH, reaction centre subunit VI


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7018324.1 Photosystem I reaction center subunit VI, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]1.1e-6691.67Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP  VKGL GSSLAGTKL ++P+RQSFR K+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLL+GGGATL Y+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_008447512.1 PREDICTED: photosystem I reaction center subunit VI, chloroplastic [Cucumis melo]1.7e-6793.06Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPA VKGL GSSLAG KL ++PSRQSFR KNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLL+GGGATL Y+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_011651500.1 photosystem I reaction center subunit VI, chloroplastic [Cucumis sativus]4.9e-6792.36Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP  VKGL GSSLAG KL ++PSRQ+FR KNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLL+GGGATL YFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_022153665.1 photosystem I reaction center subunit VI, chloroplastic-like [Momordica charantia]2.6e-6893.75Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP AVKGLAGSS+AGT+L +KPSRQSFR KNF+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLL+GGGATL YFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

XP_022955723.1 photosystem I reaction center subunit VI, chloroplastic-like [Cucurbita moschata]4.9e-6792.36Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP  VKGL GSSLAGTKL ++PSRQSFR K+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLL+GGGATL Y+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

TrEMBL top hitse value%identityAlignment
A0A0A0LAW4 Uncharacterized protein2.4e-6792.36Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP  VKGL GSSLAG KL ++PSRQ+FR KNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLL+GGGATL YFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A1S3BI80 photosystem I reaction center subunit VI, chloroplastic8.2e-6893.06Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPA VKGL GSSLAG KL ++PSRQSFR KNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLL+GGGATL Y+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A5D3C9C3 Photosystem I reaction center subunit VI8.2e-6893.06Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQPA VKGL GSSLAG KL ++PSRQSFR KNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLL+GGGATL Y+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1DHG2 photosystem I reaction center subunit VI, chloroplastic-like1.3e-6893.75Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP AVKGLAGSS+AGT+L +KPSRQSFR KNF+AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLL+GGGATL YFSATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

A0A6J1IVS0 photosystem I reaction center subunit VI, chloroplastic-like2.4e-6792.36Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP  VKGL GSSLAGTKL ++PSRQSFR K+FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFLL+GGGATL Y+SATAPDDVLPIKKGPQLPPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

SwissProt top hitse value%identityAlignment
A2Y7D9 Photosystem I reaction center subunit VI, chloroplastic1.6e-5273.94Show/hide
Query:  LATLAAVQPAAVKGLAGSSLAGTKLSIKPS-RQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL
        +A+L AVQP AVKGLAGSS++G KL+++PS R   R+      AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLL
Subjt:  LATLAAVQPAAVKGLAGSSLAGTKLSIKPS-RQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLL

Query:  LKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LKFLL+GGG+ + Y SA+A  D+LPIKKGPQLPP  GPRGKI
Subjt:  LKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

O04006 Photosystem I reaction center subunit VI, chloroplastic5.1e-5980.69Show/hide
Query:  MASLATLAAVQP-AAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP +AVKGL GSSL G KL IKPSRQSF+ K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-AAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL++GGG+ L Y SA++  DVLPIK+GPQ  PKLGPRGK+
Subjt:  GLLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

P22179 Photosystem I reaction center subunit VI, chloroplastic6.5e-6281.25Show/hide
Query:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG
        MASLATLAAVQP  +KGLAGSS+AGTKL IKP+RQSF+  N ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRG
Subjt:  MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRG

Query:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        LLLKFL++GGG+ L Y SA AP DVLPI +GPQ PPKLGPRGKI
Subjt:  LLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI6 Photosystem I reaction center subunit VI-2, chloroplastic1.6e-6082.07Show/hide
Query:  MASLATLAAVQP-AAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP AAVKGL GSSLAG KL IKPSRQSF++K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-AAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL++GGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Q9SUI7 Photosystem I reaction center subunit VI-1, chloroplastic3.9e-5980Show/hide
Query:  MASLATLAAVQP-AAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P AA+KGL GSSLAG KLSIKPSR SF+ K+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-AAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL++GGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

Arabidopsis top hitse value%identityAlignment
AT1G52230.1 photosystem I subunit H21.1e-6182.07Show/hide
Query:  MASLATLAAVQP-AAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MAS AT+AAVQP AAVKGL GSSLAG KL IKPSRQSF++K+ +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-AAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL++GGG+ L Y SA +  DVLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI

AT3G16140.1 photosystem I subunit H-12.8e-6080Show/hide
Query:  MASLATLAAVQP-AAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR
        MASLAT+AAV+P AA+KGL GSSLAG KLSIKPSR SF+ K+ +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR
Subjt:  MASLATLAAVQP-AAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKR

Query:  GLLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI
        GLLLKFL++GGG+ L Y SAT+  +VLPIK+GPQ PPKLGPRGK+
Subjt:  GLLLKFLLVGGGATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTTAGCAACTCTCGCCGCCGTTCAGCCCGCCGCCGTGAAGGGCCTCGCCGGCAGCTCCCTCGCCGGAACCAAGCTGTCCATCAAGCCCTCTCGCCAGAGCTT
CAGATCCAAAAACTTCAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATG
GTTCTGATGCTCCTTCACCTTACAATTCTCTTCAGAGCAAATTCTTTGAGACATTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTAGTAGGAGGT
GGTGCCACTCTAGTTTATTTCAGTGCCACTGCTCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCCAAACTCGGGCCACGTGGCAAGATCTAA
mRNA sequenceShow/hide mRNA sequence
GCACCATCCAATCACACAATCCAAACCCCATTTGAAGCCTCAACCTCCACTCTCAACCCTTCAACTCCACAAAGCTTCAAACCAAAAGGGCAACAATGGCTTCTTTAGCA
ACTCTCGCCGCCGTTCAGCCCGCCGCCGTGAAGGGCCTCGCCGGCAGCTCCCTCGCCGGAACCAAGCTGTCCATCAAGCCCTCTCGCCAGAGCTTCAGATCCAAAAACTT
CAAGGCTGGTGCTGTGGTGGCTAAGTATGGTGACAAAAGTGTTTACTTTGATTTGGAGGATTTGGGTAACACTACTGGACAGTGGGATTTGTATGGTTCTGATGCTCCTT
CACCTTACAATTCTCTTCAGAGCAAATTCTTTGAGACATTTGCTGCTCCATTCACCAAGAGAGGATTGTTGCTCAAGTTCTTGCTAGTAGGAGGTGGTGCCACTCTAGTT
TATTTCAGTGCCACTGCTCCAGATGATGTTCTTCCAATCAAGAAAGGACCTCAACTTCCACCCAAACTCGGGCCACGTGGCAAGATCTAATTCGCTTTCGGTTCCTTCTC
ATTTTCTGGGGTTTTTGTTGTATGTAAATTCTGTCTCTTAACCCTCCTACCAGCATGATTGAATCAAAGATACCATTTGGGAGTGTTATTTGAGCAATTGTTTTTATGGT
ATGAATGTGCTTTTACAGTGTGGTGTTGCCAATTTCTTTGAAAGATTGATAAAAATATGGGTTAAAAAGAATTGCTTTTTCTAACAAAATTGACTCAAAGTTTTCC
Protein sequenceShow/hide protein sequence
MASLATLAAVQPAAVKGLAGSSLAGTKLSIKPSRQSFRSKNFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLLVGG
GATLVYFSATAPDDVLPIKKGPQLPPKLGPRGKI