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Sed0024363 (gene) of Chayote v1 genome

Gene IDSed0024363
OrganismSechium edule (Chayote v1)
DescriptionElongation factor
Genome locationLG13:22994535..22996118
RNA-Seq ExpressionSed0024363
SyntenySed0024363
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6591414.1 hypothetical protein SDJN03_13760, partial [Cucurbita argyrosperma subsp. sororia]2.2e-1957.95Show/hide
Query:  MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIGRRY
        M WWS+ TS LR    RIASRLGFR RGL+KLGRDV+ACEY DV VMWEM+K+N+ E++ + E+RRKRRS  NI  W  S   +   +
Subjt:  MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIGRRY

KAG6608437.1 hypothetical protein SDJN03_01779, partial [Cucurbita argyrosperma subsp. sororia]1.3e-2467.42Show/hide
Query:  MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISE-KRRKRRSSWNIFGWARSAQCIGRRY
        M+WW K  S LR    R+ASRLG+R RGL+KLGRDVKACEYEDV+VMWEMLK+N+TE + I E +RRK+R  WNIF WARSA CIG R+
Subjt:  MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISE-KRRKRRSSWNIFGWARSAQCIGRRY

KAG7024293.1 hypothetical protein SDJN02_13107, partial [Cucurbita argyrosperma subsp. argyrosperma]8.2e-2262.5Show/hide
Query:  MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIGRRY
        M WWS+ TS LR    RIASRLGFR RGL+KLGRDV+ACEY DV VMWEM+K+N+ E++ + E+RRKRRS  NI  W  S  CIG R+
Subjt:  MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIGRRY

XP_021646795.1 uncharacterized protein LOC110639975 [Hevea brasiliensis]3.3e-1552.94Show/hide
Query:  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIG
        M+WW K    +RR    +A R+G R RGL+KL  DV+ACEYEDV VMWEMLK+N+TE   +S  R K+RS W+ F WAR     G
Subjt:  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIG

XP_031406616.1 uncharacterized protein LOC116215154 [Punica granatum]6.7e-1657.69Show/hide
Query:  WSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSA
        W K    LR     +A+RLG RNRGL+KL +DV+ CEY+DV+VMW MLKKN+TE   +S KRRK+RS W+ F WAR A
Subjt:  WSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSA

TrEMBL top hitse value%identityAlignment
A0A0A0L522 Uncharacterized protein2.5e-2465.52Show/hide
Query:  MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDT-ELLDISEKRRKRRSSWNIFGWARSAQCIGR
        M+WW K ++ LR    R+A RLGFR RGL+KLGRDVKACEYEDV+VMWEMLK+N+T +L+  SE+R+KR+S WNIF WARSA C+G+
Subjt:  MKWWSKTTSTLR----RIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDT-ELLDISEKRRKRRSSWNIFGWARSAQCIGR

A0A218WD46 uncharacterized protein LOC1162151543.2e-1657.69Show/hide
Query:  WSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSA
        W K    LR     +A+RLG RNRGL+KL +DV+ CEY+DV+VMW MLKKN+TE   +S KRRK+RS W+ F WAR A
Subjt:  WSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSA

A0A2C9U1C8 Uncharacterized protein8.0e-1550.59Show/hide
Query:  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIG
        M+WW K    ++R    +A R+G R RGL+KL  DV+ACEYEDV VMWEMLK+N+TE   +S K +K+R  W+ F WAR     G
Subjt:  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIG

A0A2C9U1E6 Uncharacterized protein8.0e-1550.59Show/hide
Query:  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIG
        M+WW K    ++R    +A R+G R RGL+KL  DV+ACEYEDV VMWEMLK+N+TE   +S K +K+R  W+ F WAR     G
Subjt:  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIG

A0A7N2RF01 Uncharacterized protein9.5e-1651.16Show/hide
Query:  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIGR
        M+WW K    +RR    +A+RLG R  GL+KL  DV  CEYEDV VMWEMLK+++TE   +  ++ K+RS WNIF WAR   C+ R
Subjt:  MKWWSKTTSTLRR----IASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIGR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G43150.1 unknown protein9.0e-1136.36Show/hide
Query:  KWWSKTTSTLRRI----ASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKND--TELLDISEKRRKRRSSWNIFG
        +WW+      RRI      R+GFR+ GL++L  DV +CEYED+++MW +L KN+  T +    +++++++  WN+ G
Subjt:  KWWSKTTSTLRRI----ASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKND--TELLDISEKRRKRRSSWNIFG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATGGTGGAGCAAGACGACTTCTACGCTGCGACGAATCGCTTCTCGTCTCGGTTTTCGCAACCGCGGTCTTATTAAACTAGGGCGAGATGTGAAGGCGTGTGAATA
CGAAGATGTGAACGTGATGTGGGAGATGCTCAAGAAAAACGACACCGAGCTACTTGACATCTCGGAAAAACGTCGAAAGAGGAGATCCTCTTGGAATATTTTCGGGTGGG
CTCGATCTGCTCAATGCATTGGCAGGAGATACTGA
mRNA sequenceShow/hide mRNA sequence
AGGAATCCAAAAATTTAAAGTTCCCTAAAAAGATTGTTTTAACCTAATAATCCTACAACCTTACTAAACTTTGAAAATCAGGGAGGAAGGCTCAAATGCAACGGTCATGA
TCAACGCAACGGTCGCATCGGAATCGGTGAGATCTGGCGGAAATCGGTTATTATTTTGAATTTACGTTCCGCAGTTGAGAAAATTCTTCTTTGGAGGAGAGAAACAAACC
AGAGATCGAGATTCGCCAAAATTTGAGATCTTGGCGTTTCCTCTCTTCTCCCAAGGATGAAATGGTGGAGCAAGACGACTTCTACGCTGCGACGAATCGCTTCTCGTCTC
GGTTTTCGCAACCGCGGTCTTATTAAACTAGGGCGAGATGTGAAGGCGTGTGAATACGAAGATGTGAACGTGATGTGGGAGATGCTCAAGAAAAACGACACCGAGCTACT
TGACATCTCGGAAAAACGTCGAAAGAGGAGATCCTCTTGGAATATTTTCGGGTGGGCTCGATCTGCTCAATGCATTGGCAGGAGATACTGAGAAATCTCACCTCACAATC
AGCATGATATACTCTTTTTGGAAAATCCAACACCATGATTTTGGGTCATATTTGTAACCAGGTAATGAAAGAGATTGAAAAACAAAGCAATATCCTTTCTATGTATCAGC
TAAGATGTCATTTCCTTGTTGGAACCATACAATGACATGAACTAATTACCTTATATGACCCTCTTTCTTCTCTCCTTGCTTTTTTATCTATGAAATAATATACTAAAATT
TTGC
Protein sequenceShow/hide protein sequence
MKWWSKTTSTLRRIASRLGFRNRGLIKLGRDVKACEYEDVNVMWEMLKKNDTELLDISEKRRKRRSSWNIFGWARSAQCIGRRY