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Sed0024422 (gene) of Chayote v1 genome

Gene IDSed0024422
OrganismSechium edule (Chayote v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationLG04:21153936..21158677
RNA-Seq ExpressionSed0024422
SyntenySed0024422
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051908.1 putative gag protein [Cucumis melo var. makuwa]1.7e-1159.42Show/hide
Query:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI
        MS++ E+ P+V+D NVAILQA+QG +E+MRE+R+ERRA  +RE R  Q+DEGM DL   ER  GGRGN+
Subjt:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI

KAA0067528.1 uncharacterized protein E6C27_scaffold50G00510 [Cucumis melo var. makuwa]1.7e-1159.42Show/hide
Query:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI
        MS++ E+ P+V+D NVAILQA+QG +E+MRE+R+ERRA  +RE R  Q+DEGM DL   ER  GGRGN+
Subjt:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI

TYK02449.1 F15O4.13 [Cucumis melo var. makuwa]1.7e-1159.42Show/hide
Query:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI
        MS++ E+ P+V+D NVAILQA+QG +E+MRE+R+ERRA  +RE R  Q+DEGM DL   ER  GGRGN+
Subjt:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI

TYK22420.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]1.7e-1159.42Show/hide
Query:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI
        MS++ E+ P+V+D NVAILQA+QG +E+MRE+R+ERRA  +RE R  Q+DEGM DL   ER  GGRGN+
Subjt:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI

TYK26105.1 F15O4.13 [Cucumis melo var. makuwa]1.7e-1159.42Show/hide
Query:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI
        MS++ E+ P+V+D NVAILQA+QG +E+MRE+R+ERRA  +RE R  Q+DEGM DL   ER  GGRGN+
Subjt:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI

TrEMBL top hitse value%identityAlignment
A0A5A7U9D0 Putative gag protein8.2e-1259.42Show/hide
Query:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI
        MS++ E+ P+V+D NVAILQA+QG +E+MRE+R+ERRA  +RE R  Q+DEGM DL   ER  GGRGN+
Subjt:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI

A0A5A7VII0 Uncharacterized protein8.2e-1259.42Show/hide
Query:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI
        MS++ E+ P+V+D NVAILQA+QG +E+MRE+R+ERRA  +RE R  Q+DEGM DL   ER  GGRGN+
Subjt:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI

A0A5D3C3D3 F15O4.138.2e-1259.42Show/hide
Query:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI
        MS++ E+ P+V+D NVAILQA+QG +E+MRE+R+ERRA  +RE R  Q+DEGM DL   ER  GGRGN+
Subjt:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI

A0A5D3CK70 F15O4.138.2e-1259.42Show/hide
Query:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI
        MS++ E+ P+V+D NVAILQA+QG +E+MRE+R+ERRA  +RE R  Q+DEGM DL   ER  GGRGN+
Subjt:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI

A0A5D3DRJ1 F15O4.138.2e-1259.42Show/hide
Query:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI
        MS++ E+ P+V+D NVAILQA+QG +E+MRE+R+ERRA  +RE R  Q+DEGM DL   ER  GGRGN+
Subjt:  MSYNEEKPPQVLDVNVAILQALQGGMEMMREDREERRAHHRREERALQDDEGMLDLVGQERLGGGRGNI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCAAACAAATAATTTATTGCATGTACCTGAAAGACATATTACAAGAAGTAAGGCAAAGAAGATTCAAAAGGCTTATATATTACATCTTCAAATGCTTGCCAATGC
AAAAGAAGAGATAAAGCTTTTTCATTCGAAAATTATTTACACCATTAGCACGAAAATTAAATCAATTCATTGGATTAGTCTCGATCAAGCTAATTCTGGAGTCCATTTTG
ATATTTGCAACATGTCATATAATGAGGAAAAACCACCACAGGTTCTGGATGTTAATGTTGCTATTCTTCAAGCCCTTCAAGGTGGGATGGAAATGATGAGGGAAGATAGA
GAGGAAAGGAGAGCACATCACCGACGAGAAGAACGAGCATTGCAAGATGATGAAGGTATGTTAGACTTGGTTGGACAAGAGAGACTAGGTGGAGGAAGAGGTAATATCGC
CCAACCGAGCTCGCGCCTGCACTCTCGCTCGTCTGCGTCCGCGTCGCCAGCGCCTGCGCGCCCGTCGCCGTCCCAGCGCGTCCGCTTCGCCAGCGCCCGCGCACCTGTCG
CTGTCCCAACGCGCCCGTGTCGTGCCTCTCGCCCGCCAGCGTCCAGCTTGTCCACGCCCGCGCGCTGCGCCCGGCCGGCTTCGCCGCATGCGTCGCTAACGAATTACTCA
GTAAGAATCCCCAACCGAGGTACAATACGATATACATGGTCATCTAGCAGAAAGGTATGCAAGCTATGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCAAACAAATAATTTATTGCATGTACCTGAAAGACATATTACAAGAAGTAAGGCAAAGAAGATTCAAAAGGCTTATATATTACATCTTCAAATGCTTGCCAATGC
AAAAGAAGAGATAAAGCTTTTTCATTCGAAAATTATTTACACCATTAGCACGAAAATTAAATCAATTCATTGGATTAGTCTCGATCAAGCTAATTCTGGAGTCCATTTTG
ATATTTGCAACATGTCATATAATGAGGAAAAACCACCACAGGTTCTGGATGTTAATGTTGCTATTCTTCAAGCCCTTCAAGGTGGGATGGAAATGATGAGGGAAGATAGA
GAGGAAAGGAGAGCACATCACCGACGAGAAGAACGAGCATTGCAAGATGATGAAGGTATGTTAGACTTGGTTGGACAAGAGAGACTAGGTGGAGGAAGAGGTAATATCGC
CCAACCGAGCTCGCGCCTGCACTCTCGCTCGTCTGCGTCCGCGTCGCCAGCGCCTGCGCGCCCGTCGCCGTCCCAGCGCGTCCGCTTCGCCAGCGCCCGCGCACCTGTCG
CTGTCCCAACGCGCCCGTGTCGTGCCTCTCGCCCGCCAGCGTCCAGCTTGTCCACGCCCGCGCGCTGCGCCCGGCCGGCTTCGCCGCATGCGTCGCTAACGAATTACTCA
GTAAGAATCCCCAACCGAGGTACAATACGATATACATGGTCATCTAGCAGAAAGGTATGCAAGCTATGA
Protein sequenceShow/hide protein sequence
MNQTNNLLHVPERHITRSKAKKIQKAYILHLQMLANAKEEIKLFHSKIIYTISTKIKSIHWISLDQANSGVHFDICNMSYNEEKPPQVLDVNVAILQALQGGMEMMREDR
EERRAHHRREERALQDDEGMLDLVGQERLGGGRGNIAQPSSRLHSRSSASASPAPARPSPSQRVRFASARAPVAVPTRPCRASRPPASSLSTPARCARPASPHASLTNYS
VRIPNRGTIRYTWSSSRKVCKL