CuGenDBv2

Gene ID	Sed0024434
Organism	Sechium edule (Chayote v1)
Description	tRNA dimethylallyltransferase
Genome location	LG13:647890..650111
RNA-Seq Expression	Sed0024434
Synteny	Sed0024434
Gene Ontology terms	NA
InterPro domains	IPR021489 - Protein of unknown function DUF3143

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6576682.1 hypothetical protein SDJN03_24256, partial [Cucurbita argyrosperma subsp. sororia]

1.2e-58

73.78

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Query:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY
        MSITF  QSLC  VFPS    HP+ISSI   ISTK P+LR PIS+S RK   IVSSKS      S+   EWL KLPEK  PLYSHSLPC+EAWL +LGFY
Subjt:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY

Query:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        QS  DRA+WLI+KP+WHAQLSLDV DLYIRYLKSGPGNLEKDVERRF YALSREDIENAVLGGP
Subjt:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

XP_008439322.1 PREDICTED: uncharacterized protein LOC103484146 [Cucumis melo]

2.7e-58

74.39

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Query:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY
        MSITF   SLCN VFPS    H +ISSI   ISTK P+L  PIS+  RK F IVSSKS      SS   EWL KLPEK  PLYSHSLPCVEAWL +LGFY
Subjt:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY

Query:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        QSK DRA+WLI+KP+WHAQLSLDV DLYIRYLKSGPGNLEKDVERRF YALSREDIENAVLGGP
Subjt:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

XP_022922878.1 uncharacterized protein LOC111430721 [Cucurbita moschata]

1.2e-58

73.78

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Query:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY
        MSITF  QSLC  VFPS    HP+ISSI   ISTK P+LR PIS+S RK   IVSSKS      S+   EWL KLPEK  PLYSHSLPC+EAWL +LGFY
Subjt:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY

Query:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        QS  DRA+WLI+KP+WHAQLSLDV DLYIRYLKSGPGNLEKDVERRF YALSREDIENAVLGGP
Subjt:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

XP_022984153.1 uncharacterized protein LOC111482568 [Cucurbita maxima]

3.1e-59

74.39

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Query:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY
        MSITF  QSLC  VFPS    HP+ISSI   ISTK P+LR PIS+S RK   IVSSKS      S+S  EWL KLPEK  PLYSHSLPC+EAWL +LGFY
Subjt:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY

Query:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        QS  DRA+WLI+KP+WHAQLSLDV DLYIRYLKSGPGNLEKDVERRF YALSREDIENAVLGGP
Subjt:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

XP_038880287.1 uncharacterized protein LOC120071904 [Benincasa hispida]

1.1e-59

75.15

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Query:  MMSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGF
        MMSITF  QSLCN VFPS    H +ISSI   ISTK P+L  PIS+S RK F IVSSKS      S+   EWL KLPEK  PLYSHSLPCVEAWL +LGF
Subjt:  MMSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGF

Query:  YQSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        YQSK DRA+WLI+KP+WHAQLSLDV DLYIRYLKSGPGNLEKDVERRF YALSREDIENAVLGGP
Subjt:  YQSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

TrEMBL top hits

e value

%identity

Alignment

A0A1S3AY50 uncharacterized protein LOC103484146

1.3e-58

74.39

Show/hide

Query:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY
        MSITF   SLCN VFPS    H +ISSI   ISTK P+L  PIS+  RK F IVSSKS      SS   EWL KLPEK  PLYSHSLPCVEAWL +LGFY
Subjt:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY

Query:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        QSK DRA+WLI+KP+WHAQLSLDV DLYIRYLKSGPGNLEKDVERRF YALSREDIENAVLGGP
Subjt:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

A0A5D3DHV1 Uncharacterized protein

1.3e-58

74.39

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Query:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY
        MSITF   SLCN VFPS    H +ISSI   ISTK P+L  PIS+  RK F IVSSKS      SS   EWL KLPEK  PLYSHSLPCVEAWL +LGFY
Subjt:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY

Query:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        QSK DRA+WLI+KP+WHAQLSLDV DLYIRYLKSGPGNLEKDVERRF YALSREDIENAVLGGP
Subjt:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

A0A6J1CHI2 uncharacterized protein LOC111011693

1.3e-55

70.73

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Query:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY
        MSI F   SLCN VFPS    +P+IS I  SIS K  + + PIS S RK F +VSS+S      S+   EWL KLPEK  PLYSHSLPC+EAWL  LGFY
Subjt:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY

Query:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        QSK DRALWLI+KP+WHAQLSLDV DLYIRYLKSGPGNLEKDVERRF YALSREDIENAVLGGP
Subjt:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

A0A6J1E806 uncharacterized protein LOC111430721

5.8e-59

73.78

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Query:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY
        MSITF  QSLC  VFPS    HP+ISSI   ISTK P+LR PIS+S RK   IVSSKS      S+   EWL KLPEK  PLYSHSLPC+EAWL +LGFY
Subjt:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY

Query:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        QS  DRA+WLI+KP+WHAQLSLDV DLYIRYLKSGPGNLEKDVERRF YALSREDIENAVLGGP
Subjt:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

A0A6J1J9Q7 uncharacterized protein LOC111482568

1.5e-59

74.39

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Query:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY
        MSITF  QSLC  VFPS    HP+ISSI   ISTK P+LR PIS+S RK   IVSSKS      S+S  EWL KLPEK  PLYSHSLPC+EAWL +LGFY
Subjt:  MSITFPIQSLCNKVFPS----HPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFY

Query:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        QS  DRA+WLI+KP+WHAQLSLDV DLYIRYLKSGPGNLEKDVERRF YALSREDIENAVLGGP
Subjt:  QSKSDRALWLIQKPDWHAQLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G52960.1 unknown protein

2.7e-48

68.31

Show/hide

Query:  HSISTK---QPKLRKPISESS----RKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFYQSKSDRALWLIQKPDWHAQLSL
        H +S+K    P+ R   S SS    RK   +VSSKS      S +  EWLKKLPEKN PLYSHSLPC+EAWL  LGFYQSK DRA+WLIQKPDWHAQLSL
Subjt:  HSISTK---QPKLRKPISESS----RKIFRIVSSKSP-----SSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFYQSKSDRALWLIQKPDWHAQLSL

Query:  DVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP
        DV DL IRY+KSGPGNLE+D+ERRF YALSRED ENA+LGGP
Subjt:  DVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

Sequences

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CDS sequence

Show/hide CDS sequence

ATGATGTCCATCACTTTCCCAATTCAATCTCTGTGTAACAAAGTTTTCCCATCTCATCCCAAAATTTCATCAATTAGACACTCAATTTCCACTAAACAACCAAAATTACG
CAAACCCATTTCTGAATCCTCAAGAAAAATCTTCCGTATCGTCTCTTCCAAATCACCATCGTCATCATCATCGGAGTGGCTGAAGAAGCTTCCAGAAAAGAATGCGCCAT
TGTACTCTCACAGCTTGCCCTGCGTCGAGGCCTGGTTGAATGACTTAGGGTTTTATCAGAGTAAATCGGATCGAGCCTTGTGGCTGATTCAGAAGCCTGATTGGCACGCC
CAGCTTTCCCTTGATGTTGCTGATCTCTATATAAGATATCTAAAGAGTGGACCAGGTAATCTTGAGAAAGACGTGGAGAGGAGATTTGGCTATGCACTAAGTAGAGAAGA
TATTGAGAATGCTGTACTTGGAGGACCTTGA

mRNA sequence

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GAAATATGCAAATAAATGAGAAAATTCACAAAATATACACATCGAAACGATGATGTCCATCACTTTCCCAATTCAATCTCTGTGTAACAAAGTTTTCCCATCTCATCCCA
AAATTTCATCAATTAGACACTCAATTTCCACTAAACAACCAAAATTACGCAAACCCATTTCTGAATCCTCAAGAAAAATCTTCCGTATCGTCTCTTCCAAATCACCATCG
TCATCATCATCGGAGTGGCTGAAGAAGCTTCCAGAAAAGAATGCGCCATTGTACTCTCACAGCTTGCCCTGCGTCGAGGCCTGGTTGAATGACTTAGGGTTTTATCAGAG
TAAATCGGATCGAGCCTTGTGGCTGATTCAGAAGCCTGATTGGCACGCCCAGCTTTCCCTTGATGTTGCTGATCTCTATATAAGATATCTAAAGAGTGGACCAGGTAATC
TTGAGAAAGACGTGGAGAGGAGATTTGGCTATGCACTAAGTAGAGAAGATATTGAGAATGCTGTACTTGGAGGACCTTGAACACTATTTAACATTACTTAATGTATTGCA
ATCATTCTTTTTAGTCAATTAATATAACATTATTTATTTATCTATTTTCTTCCCAT

Protein sequence

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MMSITFPIQSLCNKVFPSHPKISSIRHSISTKQPKLRKPISESSRKIFRIVSSKSPSSSSSEWLKKLPEKNAPLYSHSLPCVEAWLNDLGFYQSKSDRALWLIQKPDWHA
QLSLDVADLYIRYLKSGPGNLEKDVERRFGYALSREDIENAVLGGP

Sed0024434 (gene) of Chayote v1 genome