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Sed0024440 (gene) of Chayote v1 genome

Gene IDSed0024440
OrganismSechium edule (Chayote v1)
DescriptionU6 snRNA-associated Sm-like protein LSm5
Genome locationLG01:70659296..70662623
RNA-Seq ExpressionSed0024440
SyntenySed0024440
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0009414 - response to water deprivation (biological process)
GO:0009737 - response to abscisic acid (biological process)
GO:0005681 - spliceosomal complex (cellular component)
GO:0005688 - U6 snRNP (cellular component)
GO:0046540 - U4/U6 x U5 tri-snRNP complex (cellular component)
GO:0120115 - Lsm2-8 complex (cellular component)
GO:1990726 - Lsm1-7-Pat1 complex (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR033871 - Sm-like protein LSm5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADR71256.1 U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]1.6e-4197.7Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYE+TAEGRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE

KAA8550650.1 hypothetical protein F0562_002334 [Nyssa sinensis]1.6e-4197.7Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIA+LVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE

KAG7036265.1 Sm-like protein LSM5, partial [Cucurbita argyrosperma subsp. argyrosperma]1.3e-4198.85Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE

XP_004504703.1 sm-like protein LSM5 [Cicer arietinum]1.3e-4198.85Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE

XP_021659196.1 sm-like protein LSM5 [Hevea brasiliensis]1.6e-4197.7Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYE+TAEGRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE

TrEMBL top hitse value%identityAlignment
A0A0B0NQ45 U6 snRNA-associated Sm-like protein LSm56.1e-4298.85Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE

A0A2P5WT65 U6 snRNA-associated Sm-like protein LSm56.1e-4298.85Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE

A0A6A3A5D5 U6 snRNA-associated Sm-like protein LSm56.1e-4298.85Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE

A0A7N2MJM1 U6 snRNA-associated Sm-like protein LSm56.1e-4298.85Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE

I3SAC1 U6 snRNA-associated Sm-like protein LSm56.1e-4298.85Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRR+TKLDQILLNGNNIAILVPGGSPDPE
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE

SwissProt top hitse value%identityAlignment
P62322 U6 snRNA-associated Sm-like protein LSm53.6e-3178.48Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRR+TKLDQILLNGNNI +LVPGG
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG

Q2HJH0 U6 snRNA-associated Sm-like protein LSm53.6e-3178.48Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRR+TKLDQILLNGNNI +LVPGG
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG

Q5R628 U6 snRNA-associated Sm-like protein LSm53.6e-3178.48Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRR+TKLDQILLNGNNI +LVPGG
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG

Q9FKB0 Sm-like protein LSM51.3e-4196.47Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPD
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSP+
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPD

Q9Y4Y9 U6 snRNA-associated Sm-like protein LSm53.6e-3178.48Show/hide
Query:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG
        NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRR+TKLDQILLNGNNI +LVPGG
Subjt:  NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG

Arabidopsis top hitse value%identityAlignment
AT2G18740.1 Small nuclear ribonucleoprotein family protein1.8e-0636.36Show/hide
Query:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I    R+   L +ILL G+NI +++  G
Subjt:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG

AT3G14080.1 Small nuclear ribonucleoprotein family protein1.0e-0428.38Show/hide
Query:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL
        P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      L   ++ G N+ ++
Subjt:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL

AT3G14080.2 Small nuclear ribonucleoprotein family protein1.0e-0428.38Show/hide
Query:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL
        P ++  S  +   +  K+ V+++  ++L+GTLR FD + N VLE   E  I  E      L   ++ G N+ ++
Subjt:  PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAIL

AT4G30330.1 Small nuclear ribonucleoprotein family protein8.2e-0736.36Show/hide
Query:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG
        P  LI R + SK    IW+  + D  + G + GFD Y+N+VL++  E  I  + R+   L +ILL G+NI +++  G
Subjt:  PSELIDRCIGSK----IWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGG

AT5G48870.1 Small nuclear ribonucleoprotein family protein9.3e-4396.47Show/hide
Query:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPD
        MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVG L+GFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSP+
Subjt:  MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACAATCCTTCACAGCTACTGCCCTCAGAGCTAATCGACCGATGTATTGGGTCTAAAATATGGGTGATTATGAAAGGCGACAAAGAGCTCGTTGGCACTCTCAG
AGGCTTCGATGTTTACGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATTACTGCTGAGGGGAGACGAGTAACAAAGCTGGATCAGATTCTACTCAATGGGAACA
ATATTGCCATCCTCGTCCCGGGCGGATCACCCGACCCAGAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACAATCCTTCACAGCTACTGCCCTCAGAGCTAATCGACCGATGTATTGGGTCTAAAATATGGGTGATTATGAAAGGCGACAAAGAGCTCGTTGGCACTCTCAG
AGGCTTCGATGTTTACGTCAACATGGTTCTTGAAGATGTTACTGAATATGAGATTACTGCTGAGGGGAGACGAGTAACAAAGCTGGATCAGATTCTACTCAATGGGAACA
ATATTGCCATCCTCGTCCCGGGCGGATCACCCGACCCAGAATAA
Protein sequenceShow/hide protein sequence
MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRVTKLDQILLNGNNIAILVPGGSPDPE