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Sed0024446 (gene) of Chayote v1 genome

Gene IDSed0024446
OrganismSechium edule (Chayote v1)
Description60S ribosomal protein L44
Genome locationLG07:4578744..4580566
RNA-Seq ExpressionSed0024446
SyntenySed0024446
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000552 - Ribosomal protein L44e
IPR011332 - Zinc-binding ribosomal protein


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB5539175.1 hypothetical protein DKX38_016708 [Salix brachista]2.1e-5198.1Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKH+SQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

KAE8007867.1 hypothetical protein FH972_004428 [Carpinus fangiana]2.1e-5198.1Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKH+SQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

KAG9136698.1 hypothetical protein Leryth_004474 [Lithospermum erythrorhizon]5.6e-5299.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

XP_004241547.1 60S ribosomal protein L44 [Solanum lycopersicum]1.2e-5199.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQH IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

XP_012853979.1 PREDICTED: 60S ribosomal protein L44-like [Erythranthe guttata]9.5e-5299.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKT+CKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

TrEMBL top hitse value%identityAlignment
A0A022Q7K6 Uncharacterized protein4.6e-5299.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKT+CKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A2N9EZ29 Uncharacterized protein6.0e-52100Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGKG
        VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

A0A2N9GTL2 SHSP domain-containing protein6.0e-52100Show/hide
Query:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGKG
        VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGKG
Subjt:  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGKG

Query:  TSLF
        TSLF
Subjt:  TSLF

A0A2N9HIN9 Uncharacterized protein1.6e-52100Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

A0A3Q7H1I0 Uncharacterized protein6.0e-5299.05Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQH IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

SwissProt top hitse value%identityAlignment
A8PCG3 60S ribosomal protein L441.9e-4277.88Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK K
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G +L
Subjt:  GTSL

O23290 60S ribosomal protein L36a5.8e-5294.29Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKH SQ  IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

O59870 60S ribosomal protein L446.4e-4378.85Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK K
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G ++
Subjt:  GTSL

Q96499 60S ribosomal protein L443.1e-5396.19Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH+SQH IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

Q9UWE4 60S ribosomal protein L441.9e-4277.88Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q ++KRCKHFE+GG+KK K
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSL
        G +L
Subjt:  GTSL

Arabidopsis top hitse value%identityAlignment
AT3G23390.1 Zinc-binding ribosomal protein family protein4.1e-5394.29Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKH SQ  IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

AT4G14320.1 Zinc-binding ribosomal protein family protein4.1e-5394.29Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKH SQ  IKRCKHFEIGGDKKGK
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGK

Query:  GTSLF
        GTSLF
Subjt:  GTSLF

AT4G14320.2 Zinc-binding ribosomal protein family protein1.1e-4593.55Show/hide
Query:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEI
        MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKH SQ  IKRCKHFEI
Subjt:  MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTAACGTTCCCAAGACTAAGAAGACCTACTGCAAGAGCAAGGAATGCAAGAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGTCTTGCTGC
CCAAGGAAAGCGTCGTTATGACCGCAAACAATCGGGATATGGAGGACAGACCAAGCCTGTCTTTCACAAGAAGGCCAAAACTACCAAGAAGATTGTGCTAAGGTTGCAAT
GCCAGAGTTGCAAGCATATGTCCCAGCATGCCATTAAGAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGGAAGGGAACTTCACTCTTTTAG
mRNA sequenceShow/hide mRNA sequence
TATTTATCGAGCATAAAACGGAGAGATTTTTTTTCAGCGATCCAATTTGCCGCCGATTAGGGTTTCTTCGTAGAGGTAGCAAGACCAGAAGCCGCCATGGTTAACGTTCC
CAAGACTAAGAAGACCTACTGCAAGAGCAAGGAATGCAAGAAGCATACCTTGCACAAGGTTACCCAATATAAGAAGGGTAAGGACAGTCTTGCTGCCCAAGGAAAGCGTC
GTTATGACCGCAAACAATCGGGATATGGAGGACAGACCAAGCCTGTCTTTCACAAGAAGGCCAAAACTACCAAGAAGATTGTGCTAAGGTTGCAATGCCAGAGTTGCAAG
CATATGTCCCAGCATGCCATTAAGAGGTGCAAGCATTTTGAGATTGGTGGAGACAAGAAGGGGAAGGGAACTTCACTCTTTTAGATGCATTAACATTGTGGTTCACTATA
AATTGCTTTTTAGGGAGTTTAAATTGTGGGCTTTTCTGCCCTGTGCTTTTTGTTCTGATATTTGGTTGAATTTTGGTTAATGTGTCAGTTTAAAATGGAACCCAGCTAGT
ATTTTCCATTTTCCATTTTTAGATCCACTCTTCTATCAAGCCTTTTTTATTGTCCCCTTCCCATCAACTATTACCATTTGATTTCTGTAGTAAAATGTTTGTGGGGGTTA
TGTGTCTGATTAGATTATAGAATTTTGTTTGGGTGAGTGACTTAATTTGAAGTTCAATATGCCTTTAGCAGAATTTTTATAGGAGGTTTTTTAGTTGGATTGGAAGTTTG
AGCTTTTATAATTTATAGCAACCTTTTATAAATATGAACTTGTTTAAA
Protein sequenceShow/hide protein sequence
MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHMSQHAIKRCKHFEIGGDKKGKGTSLF