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Sed0024453 (gene) of Chayote v1 genome

Gene IDSed0024453
OrganismSechium edule (Chayote v1)
DescriptionCalcium-binding EF-hand family protein
Genome locationLG01:21165377..21165684
RNA-Seq ExpressionSed0024453
SyntenySed0024453
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064376.1 putative calcium-binding protein CML27 [Cucumis melo var. makuwa]1.5e-2671.11Show/hide
Query:  MGRKSQMYQ-RPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI
        M R+S+ Y  R ++SREQL +IFR+HDS+ DG L   ELTEAFRYIGAFLP YRA+ ALFHADSDRDGFISE+DFE LVNY E+R+YTVI
Subjt:  MGRKSQMYQ-RPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI

KAG6591370.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]2.6e-2672.73Show/hide
Query:  MGRKSQMYQ-RPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYT
        M RKS+ YQ RPK+SREQL +IFR+HD +GDG L   ELT AFRYIGAFLPSYRA  AL H DSD DGFI E+DFE LVNY EKRKYT
Subjt:  MGRKSQMYQ-RPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYT

KAG6608481.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. sororia]3.1e-2772.22Show/hide
Query:  MGRKSQMYQ-RPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI
        M RK++M Q RPK+SREQL +IFR+HD +GDG L A ELTEAFRYIGAFLPSYRA  AL + DSDRDGFI E+DFESLVNY EKR YT++
Subjt:  MGRKSQMYQ-RPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI

KAG7024248.1 Polcalcin Bet v 4, partial [Cucurbita argyrosperma subsp. argyrosperma]4.0e-2773.33Show/hide
Query:  MGRKSQMYQ-RPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI
        M RKS+ YQ RPK+SREQL +IFR+HD +GDG L   ELT AFRYIGAFLPSYRA  AL H DSD DGFI E+DFE LVNY EKRKYTVI
Subjt:  MGRKSQMYQ-RPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI

KGN55185.1 hypothetical protein Csa_012915 [Cucumis sativus]9.0e-2771.11Show/hide
Query:  MGRKSQ-MYQRPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI
        M RKS+  Y R K+SREQL +IFR+HDS+ DG L   ELTEAFRYIGAFLP+YRA+ AL HADSDRDGFI E+DFESLVNY E+R+YT+I
Subjt:  MGRKSQ-MYQRPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI

TrEMBL top hitse value%identityAlignment
A0A0A0KZR6 Uncharacterized protein4.3e-2771.11Show/hide
Query:  MGRKSQ-MYQRPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI
        M RKS+  Y R K+SREQL +IFR+HDS+ DG L   ELTEAFRYIGAFLP+YRA+ AL HADSDRDGFI E+DFESLVNY E+R+YT+I
Subjt:  MGRKSQ-MYQRPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI

A0A0A0LKW4 Uncharacterized protein2.7e-1350Show/hide
Query:  KISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI
        K+ +E+++ +FR+HD NGDG L   EL+ AF   GAF P YRA   LF AD D DGFISEQ+ + +V+Y  K KY ++
Subjt:  KISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI

A0A5A7UY46 Putative calcium-binding protein CML104.2e-1452.56Show/hide
Query:  KISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI
        K+ +E+++ IFR+HD NGDG L   EL+ AF   GAF P YRA   LF AD D DGFISEQ+ E +V+Y  K KY ++
Subjt:  KISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI

A0A5A7VDB9 Putative calcium-binding protein CML277.4e-2771.11Show/hide
Query:  MGRKSQMYQ-RPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI
        M R+S+ Y  R ++SREQL +IFR+HDS+ DG L   ELTEAFRYIGAFLP YRA+ ALFHADSDRDGFISE+DFE LVNY E+R+YTVI
Subjt:  MGRKSQMYQ-RPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI

A5AWP8 Uncharacterized protein1.2e-1350Show/hide
Query:  ISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTV
        +  +QL+ IF+ HD+NGDG L  AEL +AF+++GA +P +RA +AL HAD+D DG ISE++ + LV Y  K  YT+
Subjt:  ISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTV

SwissProt top hitse value%identityAlignment
A0T2M3 Polcalcin Cup a 45.9e-0534.38Show/hide
Query:  SREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESL
        S  +L  +F+  D+NGDG +  +EL +  R +G+ +     K  +  AD+D DG++S Q+F  L
Subjt:  SREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESL

O64943 Polcalcin Jun o 22.6e-0534.85Show/hide
Query:  SREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVN
        S  +L  +F+  D+NGDG +  +EL +  R +G+ +     K  +  AD+D DG++S Q+F  L N
Subjt:  SREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVN

Q39419 Polcalcin Bet v 41.2e-0541.79Show/hide
Query:  YQRPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDF
        + + K  RE+   IF+  D+NGDG + AAEL EA + +G+  P    K  +   D+D DGFIS Q+F
Subjt:  YQRPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDF

Q8L3R2 Probable calcium-binding protein CML414.1e-0636.92Show/hide
Query:  SREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLV
        S+E+LR +F   DS+GDG + A EL   F  +G ++    A++A+   D+D DG +  +DF  L+
Subjt:  SREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLV

Q9LE22 Probable calcium-binding protein CML275.9e-0535.48Show/hide
Query:  EQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESL
        E+L+ +F   DSNGDG +   EL   F+ +G         + L   D+DRDG+I+  +F +L
Subjt:  EQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESL

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein4.2e-0635.48Show/hide
Query:  EQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESL
        E+L+ +F   DSNGDG +   EL   F+ +G         + L   D+DRDG+I+  +F +L
Subjt:  EQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESL

AT1G18210.2 Calcium-binding EF-hand family protein4.2e-0635.48Show/hide
Query:  EQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESL
        E+L+ +F   DSNGDG +   EL   F+ +G         + L   D+DRDG+I+  +F +L
Subjt:  EQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESL

AT1G32250.1 Calcium-binding EF-hand family protein6.0e-0536.36Show/hide
Query:  SREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVN
        + EQL  +FR  D++G+G + AAEL  +   +G  L        +  ADSD DG I+ Q+F   +N
Subjt:  SREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVN

AT3G03430.1 Calcium-binding EF-hand family protein6.0e-0540.74Show/hide
Query:  IFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDF
        IF+  D+NGDG + AAEL +A + +G+ +     K+ +   D+D DG+IS Q+F
Subjt:  IFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDF

AT3G50770.1 calmodulin-like 412.9e-0736.92Show/hide
Query:  SREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLV
        S+E+LR +F   DS+GDG + A EL   F  +G ++    A++A+   D+D DG +  +DF  L+
Subjt:  SREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGGAAAAGCCAGATGTACCAGAGGCCGAAGATATCAAGAGAGCAACTAAGGATGATCTTCCGAGACCACGATAGCAACGGTGACGGTCACCTATGCGCCGCCGA
ACTCACCGAAGCCTTCCGATACATTGGAGCTTTTCTACCATCGTACCGAGCTAAACAAGCTCTTTTTCATGCCGACTCCGACAGAGATGGATTCATCAGTGAGCAGGATT
TCGAGTCGCTCGTCAATTATGTTGAGAAACGAAAATACACTGTCATTTGA
mRNA sequenceShow/hide mRNA sequence
CAAAAAGAAAAAAAAAAGTCATAGAAACGGATTCTGCCATGGGAAGGAAAAGCCAGATGTACCAGAGGCCGAAGATATCAAGAGAGCAACTAAGGATGATCTTCCGAGAC
CACGATAGCAACGGTGACGGTCACCTATGCGCCGCCGAACTCACCGAAGCCTTCCGATACATTGGAGCTTTTCTACCATCGTACCGAGCTAAACAAGCTCTTTTTCATGC
CGACTCCGACAGAGATGGATTCATCAGTGAGCAGGATTTCGAGTCGCTCGTCAATTATGTTGAGAAACGAAAATACACTGTCATTTGA
Protein sequenceShow/hide protein sequence
MGRKSQMYQRPKISREQLRMIFRDHDSNGDGHLCAAELTEAFRYIGAFLPSYRAKQALFHADSDRDGFISEQDFESLVNYVEKRKYTVI