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Sed0024531 (gene) of Chayote v1 genome

Gene IDSed0024531
OrganismSechium edule (Chayote v1)
DescriptionSm protein F
Genome locationLG10:29500201..29502650
RNA-Seq ExpressionSed0024531
SyntenySed0024531
Gene Ontology termsGO:0000387 - spliceosomal snRNP assembly (biological process)
GO:0005685 - U1 snRNP (cellular component)
GO:0071013 - catalytic step 2 spliceosome (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR001163 - LSM domain, eukaryotic/archaea-type
IPR010920 - LSM domain superfamily
IPR016487 - Sm-like protein Lsm6/SmF
IPR034100 - Small nuclear ribonucleoprotein F


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6598461.1 Inositol-pentakisphosphate 2-kinase, partial [Cucurbita argyrosperma subsp. sororia]2.8e-4198.84Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAER
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL GVPEDEEIEDAER
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAER

XP_004146017.2 probable small nuclear ribonucleoprotein F isoform X1 [Cucumis sativus]1.4e-4097.7Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYL GVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

XP_022144158.1 probable small nuclear ribonucleoprotein F [Momordica charantia]1.2e-3995.4Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYL GVPEDEEIED ER+
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

XP_022951684.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]1.3e-4197.7Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL GVPEDEE+EDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

XP_022961705.1 probable small nuclear ribonucleoprotein F [Cucurbita moschata]7.4e-4298.85Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL GVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

TrEMBL top hitse value%identityAlignment
A0A1S3CKH5 Sm protein F6.7e-4197.7Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYL GVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

A0A5D3DWN8 Sm protein F6.7e-4197.7Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQ TGSLGEILIRCNNVLYL GVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

A0A6J1GJI4 Sm protein F6.1e-4297.7Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL GVPEDEE+EDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

A0A6J1HD26 Sm protein F3.6e-4298.85Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL GVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

A0A6J1KQT2 Sm protein F3.6e-4298.85Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL GVPEDEEIEDAERD
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

SwissProt top hitse value%identityAlignment
P62306 Small nuclear ribonucleoprotein F8.5e-3378.75Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+ GV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEE

P62307 Small nuclear ribonucleoprotein F8.5e-3378.75Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+ GV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEE

P62321 Small nuclear ribonucleoprotein F8.5e-3378.75Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+ GV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEE

Q3T0Z8 Small nuclear ribonucleoprotein F8.5e-3378.75Show/hide
Query:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEE
        MS+P+NPKPFLN LTGK V+VKLKWGMEYKG+LVSVD YMN+QLANTEEYIDG  +G LGE+LIRCNNVLY+ GV E+EE
Subjt:  MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEE

Q9SUM2 Probable small nuclear ribonucleoprotein F7.2e-4087.21Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+ GVPEDEE+EDA++D
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

Arabidopsis top hitse value%identityAlignment
AT2G14285.1 Small nuclear ribonucleoprotein family protein6.0e-2685.25Show/hide
Query:  MEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        MEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+ GVPEDEE+EDA++D
Subjt:  MEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

AT2G43810.1 Small nuclear ribonucleoprotein family protein4.1e-1446.97Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL

AT2G43810.2 Small nuclear ribonucleoprotein family protein4.1e-1446.97Show/hide
Query:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL
        P  FL ++ GK VVVKL  G++Y+G L  +D YMN+ +  TEEY++GQ   + G+  +R NNVLY+
Subjt:  PKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYL

AT4G30220.1 small nuclear ribonucleoprotein F5.1e-4187.21Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+ GVPEDEE+EDA++D
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD

AT4G30220.2 small nuclear ribonucleoprotein F5.1e-4187.21Show/hide
Query:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD
        +IPVNPKPFLNNLTGKTV+VKLKWGMEYKGFL SVDSYMNLQL NTEEYIDGQ TG+LGEILIRCNNVLY+ GVPEDEE+EDA++D
Subjt:  SIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATTCCAGTTAACCCTAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGGAATGGAGTACAAAGGCTTTCTTGTTTCGGTGGA
CTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATTGATGGTCAATGTACTGGGAGTCTTGGAGAAATATTGATCAGGTGCAATAATGTTCTTTACCTTCATG
GAGTACCGGAGGATGAAGAAATCGAGGACGCCGAGCGTGACTAG
mRNA sequenceShow/hide mRNA sequence
CGCAATCCCAATACCGGCCCATATATCCAATTCTCTCAGCTACCGTAACTCGCAGATGATCAACGAAAAGAGAAAACAAACCCTAGAGAGAGAAATATCGCCATTTTCAT
CGTCTCCTTGTTCTTTCAGATCATTTCGGAGCCATGAGCATTCCAGTTAACCCTAAACCGTTCTTGAACAATTTGACTGGAAAGACTGTGGTTGTGAAACTCAAGTGGGG
AATGGAGTACAAAGGCTTTCTTGTTTCGGTGGACTCGTACATGAACTTACAGCTTGCCAATACTGAGGAATATATTGATGGTCAATGTACTGGGAGTCTTGGAGAAATAT
TGATCAGGTGCAATAATGTTCTTTACCTTCATGGAGTACCGGAGGATGAAGAAATCGAGGACGCCGAGCGTGACTAGCATGTAACTTTTTAGCAGCTCTCCCATGCCATA
GTAGCAGTGAAGTATTCAGCCTTCTAGTTTTCTAGTTCTTCTTTCATCTGCTGATTAAGTTGTATCTTGTTGCTATTGATACTATGTAGCTATCTTAAAGGACAGGAACA
TTCTCTGCTTTGGTCGATTTCAAACCCGCGACAATCATTCGGTTTCCATTGTTGTGGTAGGGAGATCGAATGGTAGAAAAACAATTCTTGGAATGTAACATCTATATTTC
ATGATAGCATCGAATTGCCTTAGATTTTCAACCATGAGATATAGTTGAGCATTATATTATTCTTGCATGTCTGTGGAGTACAATGCAATGCGATGCATATATCTATAAAA
AAATTTCGGG
Protein sequenceShow/hide protein sequence
MSIPVNPKPFLNNLTGKTVVVKLKWGMEYKGFLVSVDSYMNLQLANTEEYIDGQCTGSLGEILIRCNNVLYLHGVPEDEEIEDAERD