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Sed0024608 (gene) of Chayote v1 genome

Gene IDSed0024608
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationLG13:10072269..10072774
RNA-Seq ExpressionSed0024608
SyntenySed0024608
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EEC72938.1 hypothetical protein OsI_06800 [Oryza sativa Indica Group]4.0e-1337.37Show/hide
Query:  DEIIWNANSNDVFSVKSAYHLAMNLSRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHECF
        D I W+ +    FSV+SAYHLA+ L++++E SSS  +  ++ WN+ WK  A  K+K+ AW  + N +PT  N + + +++ + CT+CG+ +E  +H  F
Subjt:  DEIIWNANSNDVFSVKSAYHLAMNLSRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHECF

EEC84030.1 hypothetical protein OsI_30257 [Oryza sativa Indica Group]5.8e-1235.35Show/hide
Query:  DEIIWNANSNDVFSVKSAYHLAMNLSRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHECF
        D I W+ +    FSV+SAYHLA+ L+++++ SSS  + +++ WN+ WK  A  K+K+ AW  + N + T  N + + +++ + CT+CG+ +E  +H  F
Subjt:  DEIIWNANSNDVFSVKSAYHLAMNLSRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHECF

VVA38592.1 PREDICTED: reverse mRNAase, partial [Prunus dulcis]2.8e-1440.21Show/hide
Query:  DEIIWNANSNDVFSVKSAYHLAMNL-SRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH
        D I+WN + + +F+VKSAY +A+ + S  E+ SSS NS T+ LW   W      K+K+ AW +  +++PT+AN+  KG+D+++ C  CG + E+ LH
Subjt:  DEIIWNANSNDVFSVKSAYHLAMNL-SRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH

XP_023902041.1 uncharacterized protein LOC112013897 [Quercus suber]2.0e-1239.18Show/hide
Query:  DEIIWNANSNDVFSVKSAYHLAMN-LSRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH
        D+IIW  N    FSVKSAY++A+  +  +E   SS     + LW   W +   PK+++ AW +  N +PT  N+Q KG++I + C  CGM  E+N+H
Subjt:  DEIIWNANSNDVFSVKSAYHLAMN-LSRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH

XP_023908235.1 uncharacterized protein LOC112019924 [Quercus suber]7.6e-1232.8Show/hide
Query:  DEIIWNANSNDVFSVKSAYHLAMNLSRIEE-VSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH---
        D + W  N + +F+VKSAY +A  LS+ E+   SS  S  +++W + WK++   KIK+  W    +++PTR N++ K I + + C LCG+  E+ +H   
Subjt:  DEIIWNANSNDVFSVKSAYHLAMNLSRIEE-VSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH---

Query:  ECFLGGIILSRDLCKDSYRGSAKSL
        EC          + +D + GS ++L
Subjt:  ECFLGGIILSRDLCKDSYRGSAKSL

TrEMBL top hitse value%identityAlignment
A0A5E4GGB8 PREDICTED: reverse mRNAase (Fragment)1.3e-1440.21Show/hide
Query:  DEIIWNANSNDVFSVKSAYHLAMNL-SRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH
        D I+WN + + +F+VKSAY +A+ + S  E+ SSS NS T+ LW   W      K+K+ AW +  +++PT+AN+  KG+D+++ C  CG + E+ LH
Subjt:  DEIIWNANSNDVFSVKSAYHLAMNL-SRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH

B8AFP4 Reverse transcriptase domain-containing protein1.9e-1337.37Show/hide
Query:  DEIIWNANSNDVFSVKSAYHLAMNLSRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHECF
        D I W+ +    FSV+SAYHLA+ L++++E SSS  +  ++ WN+ WK  A  K+K+ AW  + N +PT  N + + +++ + CT+CG+ +E  +H  F
Subjt:  DEIIWNANSNDVFSVKSAYHLAMNLSRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHECF

M5VU98 Reverse transcriptase domain-containing protein3.9e-1440.21Show/hide
Query:  DEIIWNANSNDVFSVKSAYHLAMNL-SRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH
        D I+WN + + +F+VKSAY +A+ + S  E+ SSS NS T  LW   W      K+K+ AW +  +++PT+AN+  KG+D+++ C  CG + E+ LH
Subjt:  DEIIWNANSNDVFSVKSAYHLAMNL-SRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH

M5XHI9 Reverse transcriptase domain-containing protein3.9e-1440.21Show/hide
Query:  DEIIWNANSNDVFSVKSAYHLAMNL-SRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH
        D I+WN + + +F+VKSAY +A+ + S  E+ SSS NS T  LW   W      K+K+ AW +  +++PT+AN+  KG+D+++ C  CG + E+ LH
Subjt:  DEIIWNANSNDVFSVKSAYHLAMNL-SRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH

M5XK32 Reverse transcriptase domain-containing protein (Fragment)1.8e-1440.21Show/hide
Query:  DEIIWNANSNDVFSVKSAYHLAMNL-SRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH
        D I+WN + + +F+VKSAY +A+ + S  E+ SSS NS T+ LW   W      K+K+ AW +  +++PT+AN+  KG+D+++ C  CG + E+ LH
Subjt:  DEIIWNANSNDVFSVKSAYHLAMNL-SRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAGGCATGATGAAATTATTTGGAATGCAAATTCAAACGATGTGTTTAGTGTGAAAAGTGCCTACCACTTAGCAATGAATTTATCTAGAATTGAAGAGGTTTCTTC
CTCAGATAATTCGATGACAACAAAGTTGTGGAATTCTTTCTGGAAGGTTAAGGCAGTTCCCAAGATTAAGTTGGGTGCTTGGAACATTCTGAAAAATATGATCCCGACAA
GGGCCAATATTCAGTCGAAGGGAATTGATATTCGTAACTGTTGTACGTTATGTGGGATGCTGAATGAAACAAATTTGCATGAATGCTTTCTCGGGGGAATTATTTTGTCA
AGGGATTTGTGCAAAGATTCCTATCGAGGATCTGCCAAAAGCCTTCACTATAATTTGGCAACTTTGGAACTTTCGAAACTCTGTGTTGCATCGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATAGGCATGATGAAATTATTTGGAATGCAAATTCAAACGATGTGTTTAGTGTGAAAAGTGCCTACCACTTAGCAATGAATTTATCTAGAATTGAAGAGGTTTCTTC
CTCAGATAATTCGATGACAACAAAGTTGTGGAATTCTTTCTGGAAGGTTAAGGCAGTTCCCAAGATTAAGTTGGGTGCTTGGAACATTCTGAAAAATATGATCCCGACAA
GGGCCAATATTCAGTCGAAGGGAATTGATATTCGTAACTGTTGTACGTTATGTGGGATGCTGAATGAAACAAATTTGCATGAATGCTTTCTCGGGGGAATTATTTTGTCA
AGGGATTTGTGCAAAGATTCCTATCGAGGATCTGCCAAAAGCCTTCACTATAATTTGGCAACTTTGGAACTTTCGAAACTCTGTGTTGCATCGTAA
Protein sequenceShow/hide protein sequence
MDRHDEIIWNANSNDVFSVKSAYHLAMNLSRIEEVSSSDNSMTTKLWNSFWKVKAVPKIKLGAWNILKNMIPTRANIQSKGIDIRNCCTLCGMLNETNLHECFLGGIILS
RDLCKDSYRGSAKSLHYNLATLELSKLCVAS