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Sed0024624 (gene) of Chayote v1 genome

Gene IDSed0024624
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L18
Genome locationLG04:47614841..47616359
RNA-Seq ExpressionSed0024624
SyntenySed0024624
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0008097 - 5S rRNA binding (molecular function)
InterPro domainsIPR005484 - Ribosomal protein L18


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590442.1 hypothetical protein SDJN03_15865, partial [Cucurbita argyrosperma subsp. sororia]1.9e-5096.49Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVL+MHFTNKYVSAQVIHSETATVASAASSQEK LRSSME TRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022961444.1 uncharacterized protein LOC111462025 [Cucurbita moschata]2.5e-5096.49Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVL+MHFTNKYVSAQVIHSETATVASAASSQEK LRSSME TRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022968817.1 uncharacterized protein LOC111467940 [Cucurbita maxima]6.7e-5197.37Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVL+MHFTNKYVSAQVIHSETATVASAASSQEKVLRSSME TRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_022970166.1 uncharacterized protein LOC111469142 [Cucurbita maxima]2.8e-4992.98Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVL+MHFTNKYVSAQVIHSETAT+ASAASSQEK LR SME TRDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

XP_023515963.1 uncharacterized protein LOC111779971 [Cucurbita pepo subsp. pepo]7.4e-5094.74Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPY+L+MHFTNKYVSAQVIHS+TATVASAASSQEK LRSSME TRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

TrEMBL top hitse value%identityAlignment
A0A5D3DYC1 50S ribosomal protein L183.0e-4992.98Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPP++PPRL QYLKPYVL+MHFTNK+VSAQVIHSETATVASAASSQEK LRSSME TRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1CWR7 uncharacterized protein LOC1110152863.0e-4993.86Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRP R+TQYLKPYVL+MHFTNKYVSAQV+HSETATVASAASSQEK LR+SME TRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HE21 uncharacterized protein LOC1114620251.2e-5096.49Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVL+MHFTNKYVSAQVIHSETATVASAASSQEK LRSSME TRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1HZV8 uncharacterized protein LOC1114691421.4e-4992.98Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVL+MHFTNKYVSAQVIHSETAT+ASAASSQEK LR SME TRDVAAA KIGKLLGERLLLKGIPAVCVHLKREQKYHGK+K
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

A0A6J1I0R8 uncharacterized protein LOC1114679403.2e-5197.37Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPPPVRPPRLTQYLKPYVL+MHFTNKYVSAQVIHSETATVASAASSQEKVLRSSME TRDVAAAAKIGKLLGERL+LKGIPAVCVHLKREQKYHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AVVDSVREAGIKLL
Subjt:  AVVDSVREAGIKLL

SwissProt top hitse value%identityAlignment
A3N373 50S ribosomal protein L185.9e-1042.39Show/hide
Query:  LRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T +++ AQVI    + V +AAS+ EKV++  ++ T +  AAA +GKL+ ER L KGI AV    +   KYHG+V+ + D+ REAG++
Subjt:  LRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

A8IAP8 50S ribosomal protein L183.5e-1044.57Show/hide
Query:  LRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T+K++ AQ+I         AASS EK LRSS++   DV AA  IGKL+ ER   KG+ AV V  +    YHG+VKA+ +  RE G++
Subjt:  LRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B0BSU7 50S ribosomal protein L185.9e-1042.39Show/hide
Query:  LRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T +++ AQVI    + V +AAS+ EKV++  ++ T +  AAA +GKL+ ER L KGI AV    +   KYHG+V+ + D+ REAG++
Subjt:  LRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B3GZ27 50S ribosomal protein L185.9e-1042.39Show/hide
Query:  LRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T +++ AQVI    + V +AAS+ EKV++  ++ T +  AAA +GKL+ ER L KGI AV    +   KYHG+V+ + D+ REAG++
Subjt:  LRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

B8F6Q5 50S ribosomal protein L181.0e-0941.3Show/hide
Query:  LRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK
        L +H T +++ AQVI    + V +AAS+ EKV++  ++ T +  AAA +GK++ ER L KGI AV    +   KYHG+V+++ D+ REAG++
Subjt:  LRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAGIK

Arabidopsis top hitse value%identityAlignment
AT1G08845.1 Ribosomal L18p/L5e family protein1.8e-0626.73Show/hide
Query:  RLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + ++VSA + H  T    + A +  K +++ +    D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT1G08845.2 Ribosomal L18p/L5e family protein1.8e-0626.73Show/hide
Query:  RLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P+ L +  + ++VSA + H  T    + A +  K +++ +    D+ A   IG++L ER     +       + + K+ GK++AVV S+ + G
Subjt:  RLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G20230.1 Ribosomal L18p/L5e family protein8.0e-1030.69Show/hide
Query:  RLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
        R   Y++P++L + F+ K++ A+V+H  T+ V S A++  + +R+++    D  A   IGKL+ ER +   + AV    ++ ++  GK+  V+D+++E G
Subjt:  RLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG

Query:  I
        I
Subjt:  I

AT3G45020.1 Ribosomal L18p/L5e family protein2.2e-0732.43Show/hide
Query:  LKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVV
        LK YVLR+  + KY++A V+      + + AS+ E  +++S+EC R  +  AAA +G++L  RL ++G+       +   +K+E +  G     KV AV+
Subjt:  LKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTR--DVAAAAKIGKLLGERLLLKGIP-----AVCVHLKREQKYHG-----KVKAVV

Query:  DSVREAGIKLL
        +S+R  G+ L+
Subjt:  DSVREAGIKLL

AT5G27820.1 Ribosomal L18p/L5e family protein1.4e-4377.19Show/hide
Query:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK
        MVIPP VRPPRL  YLKPYVL+MHFTNK+V AQVIHS TATVA +ASSQEK LR +M+ TRDVAAA+KIGK+LGERLL+K IPAV + +K+EQ+YHGKVK
Subjt:  MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVK

Query:  AVVDSVREAGIKLL
        AV+DSVREAG+KLL
Subjt:  AVVDSVREAGIKLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGATTCCTCCTCCAGTTAGGCCACCCAGATTAACCCAGTATCTAAAGCCGTATGTCTTGAGGATGCACTTCACAAACAAATATGTGAGTGCCCAGGTGATCCACTC
TGAAACGGCCACGGTGGCTTCGGCTGCAAGCTCACAAGAGAAGGTGCTTCGGTCGAGCATGGAGTGTACGAGAGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGG
GAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTCCACTTGAAAAGAGAACAGAAATATCATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGT
ATTAAGCTGCTTTAA
mRNA sequenceShow/hide mRNA sequence
GGAATTTTAAAGGGAGAAAATAAAAGGTTGAACCCTAGGCCGGGCTCTGTCTTCTTCTTCTTCTTCTGTTTGATTTCTCTTGCTAAAGCTTGACGCCGCCATCGCCAACC
CTCATTTTTGTTCGAGCGATTGAATTGGAGACTAGCCAAAGGAGATGGTGATTCCTCCTCCAGTTAGGCCACCCAGATTAACCCAGTATCTAAAGCCGTATGTCTTGAGG
ATGCACTTCACAAACAAATATGTGAGTGCCCAGGTGATCCACTCTGAAACGGCCACGGTGGCTTCGGCTGCAAGCTCACAAGAGAAGGTGCTTCGGTCGAGCATGGAGTG
TACGAGAGATGTGGCTGCTGCTGCAAAGATTGGGAAATTGTTGGGAGAGAGGCTTTTGCTTAAGGGAATCCCAGCTGTTTGTGTCCACTTGAAAAGAGAACAGAAATATC
ATGGTAAGGTCAAAGCTGTTGTTGATTCTGTGAGGGAAGCAGGTATTAAGCTGCTTTAAATTCTTTTTGTTTTTGTTCAATTTGCTGCACTTTGGCTCTCTGTGAAAGTA
TTGGGTTGGGTTTTTTCATCAATCACTGCTAAAATATTATCCGAGGTTGGATTGGCAGACTGCCATTTGATGCATGATTGGAGTTCTTGTCTTTGGCTTGATCATATGTG
AGTTTCAAATGATTGGTGAGACTAGTGTTTTTAGTTATAAACGTTATTTCATACCAGCACTTTTGAGTAGTAAACCATAGTTAAGAGTCTATATTATATATATGGTTTAT
TTCCTAATATTCTTGCGCTCATAAGTTCGGTAGTTTAGGCCCCG
Protein sequenceShow/hide protein sequence
MVIPPPVRPPRLTQYLKPYVLRMHFTNKYVSAQVIHSETATVASAASSQEKVLRSSMECTRDVAAAAKIGKLLGERLLLKGIPAVCVHLKREQKYHGKVKAVVDSVREAG
IKLL