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Sed0024645 (gene) of Chayote v1 genome

Gene IDSed0024645
OrganismSechium edule (Chayote v1)
DescriptionRetrotransposon protein
Genome locationLG05:9732659..9733814
RNA-Seq ExpressionSed0024645
SyntenySed0024645
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043564.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-0532.14Show/hide
Query:  EFNNLDTVSTTCQGESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWE--EMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGY
        E  N + +    +G+S+ +T+    I ++ V+NEW   R+ L   M   WE  + M SSS R  +  WT E+E  LV+ L+ LV  G + + +G F+ GY
Subjt:  EFNNLDTVSTTCQGESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWE--EMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGY

Query:  WKISRLMLVDQV
            + M+V ++
Subjt:  WKISRLMLVDQV

KAA0049607.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-0434.78Show/hide
Query:  ESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYW-KISRLM
        E  SS   + NI F+  TN W  +R+ L  +M   W   MAS++ +  +  WT  +++ LV+ LL LV  G +    G FK GY  ++ +LM
Subjt:  ESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYW-KISRLM

KAA0065306.1 retrotransposon protein [Cucumis melo var. makuwa]2.0e-0435.63Show/hide
Query:  GESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYWK
        GE  SS   + NI F+  TN W  +R+ L  +M   W   MAS + +  +  WT  ++++LV+ LL LV  G +   +G FK  Y K
Subjt:  GESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYWK

TYK15965.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-0434.78Show/hide
Query:  ESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYW-KISRLM
        E  SS   + NI F+  TN W  +R+ L  +M   W   MAS++ +  +  WT  +++ LV+ LL LV  G +    G FK GY  ++ +LM
Subjt:  ESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYW-KISRLM

TYK19779.1 retrotransposon protein [Cucumis melo var. makuwa]2.4e-0532.14Show/hide
Query:  EFNNLDTVSTTCQGESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWE--EMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGY
        E  N + +    +G+S+ +T+    I ++ V+NEW   R+ L   M   WE  + M SSS R  +  WT E+E  LV+ L+ LV  G + + +G F+ GY
Subjt:  EFNNLDTVSTTCQGESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWE--EMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGY

Query:  WKISRLMLVDQV
            + M+V ++
Subjt:  WKISRLMLVDQV

TrEMBL top hitse value%identityAlignment
A0A5A7TJS2 Retrotransposon protein8.9e-0632.14Show/hide
Query:  EFNNLDTVSTTCQGESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWE--EMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGY
        E  N + +    +G+S+ +T+    I ++ V+NEW   R+ L   M   WE  + M SSS R  +  WT E+E  LV+ L+ LV  G + + +G F+ GY
Subjt:  EFNNLDTVSTTCQGESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWE--EMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGY

Query:  WKISRLMLVDQV
            + M+V ++
Subjt:  WKISRLMLVDQV

A0A5A7U5I3 Retrotransposon protein1.3e-0434.78Show/hide
Query:  ESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYW-KISRLM
        E  SS   + NI F+  TN W  +R+ L  +M   W   MAS++ +  +  WT  +++ LV+ LL LV  G +    G FK GY  ++ +LM
Subjt:  ESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYW-KISRLM

A0A5A7VG45 Retrotransposon protein9.8e-0535.63Show/hide
Query:  GESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYWK
        GE  SS   + NI F+  TN W  +R+ L  +M   W   MAS + +  +  WT  ++++LV+ LL LV  G +   +G FK  Y K
Subjt:  GESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYWK

A0A5D3CWW4 Retrotransposon protein1.3e-0434.78Show/hide
Query:  ESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYW-KISRLM
        E  SS   + NI F+  TN W  +R+ L  +M   W   MAS++ +  +  WT  +++ LV+ LL LV  G +    G FK GY  ++ +LM
Subjt:  ESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGYW-KISRLM

A0A5D3D8J6 Retrotransposon protein1.2e-0532.14Show/hide
Query:  EFNNLDTVSTTCQGESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWE--EMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGY
        E  N + +    +G+S+ +T+    I ++ V+NEW   R+ L   M   WE  + M SSS R  +  WT E+E  LV+ L+ LV  G + + +G F+ GY
Subjt:  EFNNLDTVSTTCQGESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWE--EMMASSSKRGQRFHWTPEDEQMLVDALLSLV-GGFYHTRSGNFKKGY

Query:  WKISRLMLVDQV
            + M+V ++
Subjt:  WKISRLMLVDQV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTGGGCATTCTTGATGAATTCAACAACTTAGACACTGTTTCAACAACATGTCAAGGTGAAAGCTCTAGCTCTACCTCTATTGTGCATAACATACCTTTCCTTAG
AGTTACAAATGAATGGATTGTGTATAGAGAGATGTTAGGTGAAAGAATGAAGAGGATATGGGAAGAAATGATGGCTTCATCTAGTAAGCGTGGACAACGATTTCATTGGA
CTCCAGAAGATGAGCAGATGTTGGTCGATGCACTTCTTTCTCTTGTTGGAGGATTCTACCACACCCGTAGTGGGAACTTCAAGAAAGGATATTGGAAGATTTCGAGGTTA
ATGTTGGTTGATCAAGTGCAGCTAATGAGATGTTCACAATCCCCTCGAGTAGACCCACCAGCTCAATGCGAAAATAGTCAGTATAGTGGGACAAAAAGGAAGAAACCTGA
GACGAAATCACATTTTGATGTGATGGTAGATAGAGTGACTGAAAATCATGAAGCTCAAATGGAGCGGATGCTTGCACGACAAGCAACTCACTATGAAGAAATTGAGAGGC
TACATCAAGCATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTGGGCATTCTTGATGAATTCAACAACTTAGACACTGTTTCAACAACATGTCAAGGTGAAAGCTCTAGCTCTACCTCTATTGTGCATAACATACCTTTCCTTAG
AGTTACAAATGAATGGATTGTGTATAGAGAGATGTTAGGTGAAAGAATGAAGAGGATATGGGAAGAAATGATGGCTTCATCTAGTAAGCGTGGACAACGATTTCATTGGA
CTCCAGAAGATGAGCAGATGTTGGTCGATGCACTTCTTTCTCTTGTTGGAGGATTCTACCACACCCGTAGTGGGAACTTCAAGAAAGGATATTGGAAGATTTCGAGGTTA
ATGTTGGTTGATCAAGTGCAGCTAATGAGATGTTCACAATCCCCTCGAGTAGACCCACCAGCTCAATGCGAAAATAGTCAGTATAGTGGGACAAAAAGGAAGAAACCTGA
GACGAAATCACATTTTGATGTGATGGTAGATAGAGTGACTGAAAATCATGAAGCTCAAATGGAGCGGATGCTTGCACGACAAGCAACTCACTATGAAGAAATTGAGAGGC
TACATCAAGCATAA
Protein sequenceShow/hide protein sequence
MGVGILDEFNNLDTVSTTCQGESSSSTSIVHNIPFLRVTNEWIVYREMLGERMKRIWEEMMASSSKRGQRFHWTPEDEQMLVDALLSLVGGFYHTRSGNFKKGYWKISRL
MLVDQVQLMRCSQSPRVDPPAQCENSQYSGTKRKKPETKSHFDVMVDRVTENHEAQMERMLARQATHYEEIERLHQA