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Sed0024664 (gene) of Chayote v1 genome

Gene IDSed0024664
OrganismSechium edule (Chayote v1)
DescriptionPhycobilisome rod-core linker polypeptide CpcG2 like
Genome locationLG02:33951507..33956616
RNA-Seq ExpressionSed0024664
SyntenySed0024664
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000977 - RNA polymerase II regulatory region sequence-specific DNA binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022935686.1 uncharacterized protein LOC111442470 [Cucurbita moschata]6.0e-2694.37Show/hide
Query:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
        MAGGNFMHRVVSYLVNE+LVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNF+SFKNQ
Subjt:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
XP_022949523.1 uncharacterized protein LOC111452848 [Cucurbita moschata]7.1e-2797.18Show/hide
Query:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
        MAGGNFMHRVVSYLVNE+LVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQ+KDLSKNFESFKNQ
Subjt:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
XP_022983627.1 uncharacterized protein LOC111482182 [Cucurbita maxima]1.8e-2592.96Show/hide
Query:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
        MAGGNFMHRVVSYLVNE+LVNSLANSR+FQRFAVRTSKQIEDIS KAA+KKQELAEQVKDLSKNF+SFKNQ
Subjt:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
XP_023527736.1 uncharacterized protein LOC111790863 [Cucurbita pepo subsp. pepo]2.3e-2591.55Show/hide
Query:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
        MAGGNFMHRVVSYLVNE++VNSLANSR+FQRFAVRTSKQIEDIS KA+QKKQELAEQVKDLSKNF+SFKNQ
Subjt:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
XP_038903248.1 uncharacterized protein LOC120089892 [Benincasa hispida]1.8e-2592.96Show/hide
Query:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
        MAGGNFMHRVVSYLVNE+LVNSLANSR+FQRFAVRTSKQIE+IS KAAQKKQELAEQVKDLSKNF+SFKNQ
Subjt:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
TrEMBL top hitse value%identityAlignment
A0A6J1CWK8 uncharacterized protein LOC1110149591.9e-2594.37Show/hide
Query:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
        MAGGNF++RVVSYLVNELLV+SLANSRSFQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNFESFKNQ
Subjt:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
A0A6J1F5E7 uncharacterized protein LOC1114424702.9e-2694.37Show/hide
Query:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
        MAGGNFMHRVVSYLVNE+LVNSLANSR+FQRFAVRTSKQIEDIS KAAQKKQELAEQVKDLSKNF+SFKNQ
Subjt:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
A0A6J1GCB5 uncharacterized protein LOC1114528483.5e-2797.18Show/hide
Query:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
        MAGGNFMHRVVSYLVNE+LVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQ+KDLSKNFESFKNQ
Subjt:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
A0A6J1I5H8 uncharacterized protein LOC1114701023.5e-2797.18Show/hide
Query:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
        MAGGNFMHRVVSYLVNE+LVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQ+KDLSKNFESFKNQ
Subjt:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
A0A6J1IZW4 uncharacterized protein LOC1114821828.5e-2692.96Show/hide
Query:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
        MAGGNFMHRVVSYLVNE+LVNSLANSR+FQRFAVRTSKQIEDIS KAA+KKQELAEQVKDLSKNF+SFKNQ
Subjt:  MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G01350.1 unknown protein3.0e-1555.22Show/hide
Query:  GGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFK
        GGNF+ RV+SY+ NE +VN LANS +FQRFAVRTSK+IE++S  AA+ ++++A+Q+++ +KN +S K
Subjt:  GGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTTACCTCGTCAATGAGCTTCTTGTCAACAGTCTTGCCAACAGCCGTTCATTTCAAAGGTTTGCTGTGAGGACATC
AAAGCAAATTGAGGATATATCTACTAAGGCTGCGCAGAAGAAGCAAGAACTTGCGGAACAAGTGAAAGACCTCTCCAAAAATTTTGAGTCTTTCAAGAACCAATGA
mRNA sequenceShow/hide mRNA sequence
GAAAGGATAAAGGATTATTTTTTTACAAGTAACGCACAATATAAATTAAGACTGCGAGCGTTGGCGTGGGGTATCGGGTTGGAGGAAAAAACTAGGGCATAGAATATCAT
TGTCATCGCGACGATATTATTCAGGCGCACGCATCAAGCAAGCATCTGTTTATTTTGATCCGTTGAAACGAGCATGGCGGGTGGAAATTTCATGCACAGAGTAGTTTCTT
ACCTCGTCAATGAGCTTCTTGTCAACAGTCTTGCCAACAGCCGTTCATTTCAAAGGTTTGCTGTGAGGACATCAAAGCAAATTGAGGATATATCTACTAAGGCTGCGCAG
AAGAAGCAAGAACTTGCGGAACAAGTGAAAGACCTCTCCAAAAATTTTGAGTCTTTCAAGAACCAATGATGCGTAAGCTGGTTCTAATGCTCATGGGTATCAAAAAGAGC
CAATAATACAGTCCGGGATGTGTTACTACATGATGTAAATCCTATTCCAAAGTTCCAAATGTATTTGGTCGTGTAGACATAATTGTAGTTTTACTTATAACAGTTGCAGA
GTACCTCAAAATTTGTTTACACAACCTTATGTTTTCGTGTATTGAATAATTTGTGTCACTTTGGAGCCTGGTCTCCGGTGAAAAGAAGCCAGGATAAACCTAATTCTGCC
TTGACATGTATGCACTTGCATGATTTCAGTAACTTGTTCGTTTGTTCCATTTGTTCCATTAACATGACTGATTTGAATTGGACTTGTAAACATGTCATCAGACAAAGCTG
ACACAATTTAAGTTCAAGTAGTTTGCCTATAGTCATGATCAATGAA
Protein sequenceShow/hide protein sequence
MAGGNFMHRVVSYLVNELLVNSLANSRSFQRFAVRTSKQIEDISTKAAQKKQELAEQVKDLSKNFESFKNQ