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Sed0024671 (gene) of Chayote v1 genome

Gene IDSed0024671
OrganismSechium edule (Chayote v1)
Descriptionleucine-rich repeat extensin-like protein 3
Genome locationLG03:7042569..7043474
RNA-Seq ExpressionSed0024671
SyntenySed0024671
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601837.1 hypothetical protein SDJN03_07070, partial [Cucurbita argyrosperma subsp. sororia]9.8e-4173.43Show/hide
Query:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF
        M P  SLLFL  LLLISPS++SAA RRLDD     TPADP+VKC PC+QNPPS PPPPVY      SPPPPD VIYYSPPPP KKDHKN +CPPPP P+F
Subjt:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF

Query:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL
        MYITGPPGDLYPIDQ+YNAAAR LVS+AASAV +GLAV   L+
Subjt:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL

KAG7032543.1 hypothetical protein SDJN02_06592, partial [Cucurbita argyrosperma subsp. argyrosperma]7.5e-4173.43Show/hide
Query:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF
        M P  SLLFL  LLLISPS++SAA RRLDD     TPADP+VKC PC+QNPPS PPPPVY      SPPPPD VIYYSPPPP KKDHKN +CPPPP P+F
Subjt:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF

Query:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL
        MYITGPPGDLYPIDQ+YNAA+R LVS+AASAV +GLAVA  L+
Subjt:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL

XP_022953268.1 extensin [Cucurbita moschata]7.5e-4173.43Show/hide
Query:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF
        M P  SLLFL  LLLISPS++SAA RRLDD     TPADP+VKC PC+QNPPS PPPPVY      SPPPPD VIYYSPPPP KKDHKN +CPPPP P+F
Subjt:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF

Query:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL
        MYITGPPGDLYPIDQ+YNAA+R LVS+AASAV +GLAVA  L+
Subjt:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL

XP_022989990.1 leucine-rich repeat extensin-like protein 3 [Cucurbita maxima]1.2e-4376.92Show/hide
Query:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF
        M P  SLLFL  LLLISPS++SAA RRLDDT V ATPADP+VKC PC+QNPPS PPPPVY      SPPPPD V+YYSPPPP KKDHKN +CPPPP P+F
Subjt:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF

Query:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL
        MYITGPPGDLYPIDQNYNAAAR LVS+AASAV IGLAVA  L+
Subjt:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL

XP_023520933.1 extensin [Cucurbita pepo subsp. pepo]1.2e-4174.31Show/hide
Query:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS--PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PS
        M P  SLLFL  LLLISPS++SAA RRLDD     TP DP+VKC PC+QNPPS  PPPPVY      SPPPPD VIYYSPPPP KKDHKN +CPPPP P+
Subjt:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS--PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PS

Query:  FMYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL
        FMYITGPPGDLYPIDQNYNAAAR LVS+AASAV IGLAVA  L+
Subjt:  FMYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL

TrEMBL top hitse value%identityAlignment
A0A0A0KPJ1 Uncharacterized protein1.2e-3666.9Show/hide
Query:  MFPLKSLLFLNFLLLISPSAA--SAAARRLDDTAVPATPADPSVKCGPCQQNPPSPPPPVYL------SPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-P
        M PLK LLFLNFLLLISPS+A  S   RRLDDT    TP DP+VKC PC+QNPPSPPPPV        SPPPPD V YYSPPPPKKK+ K+ NCPPPP P
Subjt:  MFPLKSLLFLNFLLLISPSAA--SAAARRLDDTAVPATPADPSVKCGPCQQNPPSPPPPVYL------SPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-P

Query:  SFMYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAV
        SFMYITGPPGDLYPIDQ YNAA R   ++    V  GL + V
Subjt:  SFMYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAV

A0A1S3CT22 extensin-like2.9e-3868.97Show/hide
Query:  MFPLKSLLFLNFLLLISPSAA--SAAARRLDDTAVPATPADPSVKCGPCQQNPPSPPPPVYL------SPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-P
        M PLK LLFLNFLLLISPS+A  SA  RRLDDT    TP DP+VKC PC+QNPPSPPPP+        SPPPPD V YYSPPPPKKK+ KN NCPPPP P
Subjt:  MFPLKSLLFLNFLLLISPSAA--SAAARRLDDTAVPATPADPSVKCGPCQQNPPSPPPPVYL------SPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-P

Query:  SFMYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL
        SFMYITGPPGDLYPIDQNYNAA R     +A+A A+G+ +A  LL
Subjt:  SFMYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL

A0A6J1DDL2 acrosin3.5e-3670.63Show/hide
Query:  MFPLKSLLFLNFLLLISPS---AASAAARRLDDT-AVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPP-
        M PLKSLLFLN LLLISPS   AASAAAR LD+  AVP+T  DP+VKC PC QNPPS PPPP+Y      SPPPPD + YYSPPPPKK  + N NCPPP 
Subjt:  MFPLKSLLFLNFLLLISPS---AASAAARRLDDT-AVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPP-

Query:  -PPSFMYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAV
         PPSF YITGPPGDLYPIDQ+YNAAARTL S+AA+AV +GL +
Subjt:  -PPSFMYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAV

A0A6J1GMY1 extensin3.6e-4173.43Show/hide
Query:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF
        M P  SLLFL  LLLISPS++SAA RRLDD     TPADP+VKC PC+QNPPS PPPPVY      SPPPPD VIYYSPPPP KKDHKN +CPPPP P+F
Subjt:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF

Query:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL
        MYITGPPGDLYPIDQ+YNAA+R LVS+AASAV +GLAVA  L+
Subjt:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL

A0A6J1JNW0 leucine-rich repeat extensin-like protein 36.0e-4476.92Show/hide
Query:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF
        M P  SLLFL  LLLISPS++SAA RRLDDT V ATPADP+VKC PC+QNPPS PPPPVY      SPPPPD V+YYSPPPP KKDHKN +CPPPP P+F
Subjt:  MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPS-PPPPVY-----LSPPPPDTVIYYSPPPPKKKDHKNTNCPPPP-PSF

Query:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL
        MYITGPPGDLYPIDQNYNAAAR LVS+AASAV IGLAVA  L+
Subjt:  MYITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G02405.1 proline-rich family protein3.4e-0735.46Show/hide
Query:  LKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPSPPPPVYLSPPPPDTVIYYSPPPPKKKDHKNTNC---------PPPPPSFM
        L + + +  ++L SP   +A     +D++     A+  V C PC QN P PPP    SPPPP      SPPPP     K ++C         PPPPP+++
Subjt:  LKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPSPPPPVYLSPPPPDTVIYYSPPPPKKKDHKNTNC---------PPPPPSFM

Query:  YITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFL
        + T PPGDLYPI+  Y AA      S       G+ V + L
Subjt:  YITGPPGDLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFL

AT1G23040.1 hydroxyproline-rich glycoprotein family protein9.2e-1344.72Show/hide
Query:  SPSAASAAARRLDDTAVPATPADPSVKCGP-CQQNPPSPPPPVYLSPPPPDTVIYYSPPPPKKKDHKNTNCPPPPP-SFMYITGPPGDLYPIDQNYNAAA
        S S AS  AR+LD+        DP +KC P C QNPP P PP    PPP        PPPP KK   ++ CPPPPP +F+YITGPPG+LYP+D+ + AAA
Subjt:  SPSAASAAARRLDDTAVPATPADPSVKCGP-CQQNPPSPPPPVYLSPPPPDTVIYYSPPPPKKKDHKNTNCPPPPP-SFMYITGPPGDLYPIDQNYNAAA

Query:  --RTLVSSAASAVAIGLAVAVFL
            +V   +  +A G+   + L
Subjt:  --RTLVSSAASAVAIGLAVAVFL

AT1G70990.1 proline-rich family protein7.1e-1341.48Show/hide
Query:  LKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQN--PPSPPPPVYLSPPPPDTVIYYSPPPPKKKDHKNTNCPPPPPSFMYITGPPG
        L +++FL F ++I+ S  S+  R+L++        DP +KC PC QN  PPSPPPP   SPPPP       PPP      K + CPPPP +++Y+TGPPG
Subjt:  LKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQN--PPSPPPPVYLSPPPPDTVIYYSPPPPKKKDHKNTNCPPPPPSFMYITGPPG

Query:  DLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL
        +LYPIDQ + AA     +    +  I   V  FL+
Subjt:  DLYPIDQNYNAAARTLVSSAASAVAIGLAVAVFLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCCTCTCAAATCTCTCCTTTTTCTCAATTTCCTCCTCCTAATTTCCCCCTCCGCCGCATCCGCCGCCGCTCGCCGCCTCGACGACACCGCCGTCCCGGCCACCCC
CGCCGACCCCTCCGTCAAGTGCGGCCCATGCCAACAGAACCCACCATCCCCACCGCCGCCCGTCTACCTCTCGCCGCCGCCGCCGGACACCGTCATCTACTACTCTCCCC
CACCGCCCAAGAAGAAGGACCACAAGAACACCAACTGCCCGCCGCCGCCGCCCTCCTTCATGTACATAACCGGCCCTCCCGGCGACCTCTATCCCATCGATCAGAATTAT
AACGCCGCCGCCCGGACACTCGTCTCCTCCGCAGCCTCCGCCGTGGCAATTGGATTGGCCGTGGCCGTGTTTCTGTTGGCTTAA
mRNA sequenceShow/hide mRNA sequence
AAGAAATTAAAAAAAAAAAAAAGGGTTGGTGGGCCACACATAGACTGTATGCACATGCACTTCGAATCTTATCTCTCTCACTTAAAAAGTCTTCAAAGTTTTGTACAGTT
TTTTTCATGGCACTCATTTTCACCTAATTCTCAAACTCTCTCACAAAAACCAATAACAAATTAACAATATGTTTCCTCTCAAATCTCTCCTTTTTCTCAATTTCCTCCTC
CTAATTTCCCCCTCCGCCGCATCCGCCGCCGCTCGCCGCCTCGACGACACCGCCGTCCCGGCCACCCCCGCCGACCCCTCCGTCAAGTGCGGCCCATGCCAACAGAACCC
ACCATCCCCACCGCCGCCCGTCTACCTCTCGCCGCCGCCGCCGGACACCGTCATCTACTACTCTCCCCCACCGCCCAAGAAGAAGGACCACAAGAACACCAACTGCCCGC
CGCCGCCGCCCTCCTTCATGTACATAACCGGCCCTCCCGGCGACCTCTATCCCATCGATCAGAATTATAACGCCGCCGCCCGGACACTCGTCTCCTCCGCAGCCTCCGCC
GTGGCAATTGGATTGGCCGTGGCCGTGTTTCTGTTGGCTTAAGCGGTGGGATTTTAATCGGATTTCTTGTGAAGGTAAAACCAATTCATCCCCTCTACGAGATTTTCGAT
TTCGGATTTGTTGTTTTAGAATTTTTATGGATAAAATTCAGCATAATTTTCTTCTCTAATAATTTTGTAATTTGTAATAATTATTGAACTCTTCTGAATGTGTGATTGGA
AAAGAAAAATTCTGGGTTTTTCGTAATTTTCTTTTTCTTTACCATTTTCAATCAAAATAACAAAAATTAGGTCAGCTTTTTTAATTTGATCAATTGCATATTATTTTTTC
GTTTGCCTTTTTCAATATGAATGGGT
Protein sequenceShow/hide protein sequence
MFPLKSLLFLNFLLLISPSAASAAARRLDDTAVPATPADPSVKCGPCQQNPPSPPPPVYLSPPPPDTVIYYSPPPPKKKDHKNTNCPPPPPSFMYITGPPGDLYPIDQNY
NAAARTLVSSAASAVAIGLAVAVFLLA