CuGenDBv2

Gene ID	Sed0024679
Organism	Sechium edule (Chayote v1)
Description	mediator of RNA polymerase II transcription subunit 28
Genome location	LG13:3085183..3088299
RNA-Seq Expression	Sed0024679
Synteny	Sed0024679
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR034456 - Mediator of RNA polymerase II transcription subunit 28

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004152267.1 mediator of RNA polymerase II transcription subunit 28 [Cucumis sativus]

2.2e-64

93.62

Show/hide

Query:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP++QQH LD QLQSSQSPREDM AYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KN+IIKKQE+LIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_008454378.1 PREDICTED: mediator of RNA polymerase II transcription subunit 28 [Cucumis melo]

2.5e-63

93.62

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Query:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ L+QQH LD Q QSSQSPREDM AYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_022149222.1 mediator of RNA polymerase II transcription subunit 28 [Momordica charantia]

4.2e-63

93.62

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Query:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MA+RQP++QQHQLD QLQS QSPREDM AYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLKNDIIKK ERLIEGWKKDLKDQL KHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_022922953.1 mediator of RNA polymerase II transcription subunit 28 [Cucurbita moschata]

1.3e-64

95.04

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Query:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPL+QQ+Q+D QLQSSQSPREDM +YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

XP_038904970.1 mediator of RNA polymerase II transcription subunit 28 [Benincasa hispida]

1.3e-64

95.04

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Query:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPL+QQH LD QLQSSQSPREDM AYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQP KVETLRKEIS
Subjt:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLKN+IIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KT19 Uncharacterized protein

1.1e-64

93.62

Show/hide

Query:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQP++QQH LD QLQSSQSPREDM AYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KN+IIKKQE+LIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A1S3BZ89 mediator of RNA polymerase II transcription subunit 28

1.2e-63

93.62

Show/hide

Query:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ L+QQH LD Q QSSQSPREDM AYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A5A7TRZ8 Mediator of RNA polymerase II transcription subunit 28

1.2e-63

93.62

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Query:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQ L+QQH LD Q QSSQSPREDM AYVMALEAALLPCLPARELQAIDRSPHPSHQ+DVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELK+KNDIIKKQERLIEGWKKDLK+QLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A6J1E897 mediator of RNA polymerase II transcription subunit 28

6.4e-65

95.04

Show/hide

Query:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPL+QQ+Q+D QLQSSQSPREDM +YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

A0A6J1JAT8 mediator of RNA polymerase II transcription subunit 28

6.4e-65

95.04

Show/hide

Query:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
        MAERQPL+QQ+Q+D QLQSSQSPREDM +YVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS
Subjt:  MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEIS

Query:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV
        AIEEELKLK+DIIKKQERLIEGWKKDLKDQLDKHNNELEKV
Subjt:  AIEEELKLKNDIIKKQERLIEGWKKDLKDQLDKHNNELEKV

SwissProt top hits

e value

%identity

Alignment

Q9LFA5 Mediator of RNA polymerase II transcription subunit 28

2.2e-38

70.34

Show/hide

Query:  EDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW
        ED+ A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  
Subjt:  EDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW

Query:  KKDLKDQLDKHNNELEKV
        +K +K+Q++KH +ELEKV
Subjt:  KKDLKDQLDKHNNELEKV

Arabidopsis top hits

e value

%identity

Alignment

AT3G52860.1 unknown protein

1.6e-39

70.34

Show/hide

Query:  EDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW
        ED+ A V ALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYF+GL+RED+ P++ E+L+K+I+ +EEELK K+++IKK  RL +  
Subjt:  EDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQ-PTKVETLRKEISAIEEELKLKNDIIKKQERLIEGW

Query:  KKDLKDQLDKHNNELEKV
        +K +K+Q++KH +ELEKV
Subjt:  KKDLKDQLDKHNNELEKV

Sequences

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CDS sequence

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ATGGCTGAACGACAACCACTCGAGCAACAGCATCAACTTGATTCACAGCTGCAATCCTCGCAGTCTCCAAGAGAAGATATGACTGCGTACGTGATGGCATTGGAAGCTGC
TCTGCTCCCGTGCTTGCCTGCAAGAGAACTACAAGCAATCGACCGTTCTCCTCATCCTTCTCATCAGATTGATGTGGAGAGACATGCTAGAGATTTTATGGAGGCAGCTA
AAAAGCTTCAACTATACTTCATTGGTTTACAACGTGAGGATCAACCAACCAAAGTGGAAACCCTAAGAAAGGAGATATCTGCCATTGAGGAGGAACTGAAGTTAAAGAAT
GACATAATCAAGAAGCAGGAGAGGCTTATTGAGGGTTGGAAGAAGGATTTGAAAGACCAATTAGATAAACATAACAATGAGTTAGAGAAGGTTTAG

mRNA sequence

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ATTATTTAACGCTAAGTTTATTTTGCATAATAAAAACAACCGTCGGGTCGGGCATTTTCTTCGGATAGTAAAACATCGGGTCGGGCATTCAGGGTTCAGTCTTGCAATCT
GTTCTTCGTTTTCGATTCCTGCAGTTTCTTCGAATTCTTCTCCGATTTCAACAATGGTGTAGCTCGAATCGCTGGTCCTACTCAAATTGATCCCGATTCGAAACTTGGGT
CTGATTCATTGAGCTTGTTTCTTCTTCCTCGCAATCCGATCTTCGCATAAGGACTGCAGTTTCCAATTTCTCTTCATCTTCGAATTTCTCAGATATGGCTGAACGACAAC
CACTCGAGCAACAGCATCAACTTGATTCACAGCTGCAATCCTCGCAGTCTCCAAGAGAAGATATGACTGCGTACGTGATGGCATTGGAAGCTGCTCTGCTCCCGTGCTTG
CCTGCAAGAGAACTACAAGCAATCGACCGTTCTCCTCATCCTTCTCATCAGATTGATGTGGAGAGACATGCTAGAGATTTTATGGAGGCAGCTAAAAAGCTTCAACTATA
CTTCATTGGTTTACAACGTGAGGATCAACCAACCAAAGTGGAAACCCTAAGAAAGGAGATATCTGCCATTGAGGAGGAACTGAAGTTAAAGAATGACATAATCAAGAAGC
AGGAGAGGCTTATTGAGGGTTGGAAGAAGGATTTGAAAGACCAATTAGATAAACATAACAATGAGTTAGAGAAGGTTTAGTGTAGCACCAATAAGGCTTGCAATCCAAAG
CTCTCCCTGCTGTTTAGTAATTGATAGTTCATGTCAATTTTTTTTTTGGAAATCGTAAATTGGATCTTTTCTCCACTATGTCTTGAGTTAATTACACTCGTCCCTAGGCT
AGGAATTGGGAGACATAAAAAAATGGAGACACGAGAGTATTGTTTGCCTTTATATATCATTCTCTCCTTATTCTGTTGTTTCTAGCATCAGTATATCTTTTGTCCAGAAT
GGAGAAACGTGGAAGGCTTTAATGAGAT

Protein sequence

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MAERQPLEQQHQLDSQLQSSQSPREDMTAYVMALEAALLPCLPARELQAIDRSPHPSHQIDVERHARDFMEAAKKLQLYFIGLQREDQPTKVETLRKEISAIEEELKLKN
DIIKKQERLIEGWKKDLKDQLDKHNNELEKV

Sed0024679 (gene) of Chayote v1 genome