CuGenDBv2

Gene ID	Sed0024697
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S13
Genome location	LG05:7023982..7026781
RNA-Seq Expression	Sed0024697
Synteny	Sed0024697
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005730 - nucleolus (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070181 - small ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR000589 - Ribosomal protein S15 IPR009068 - S15/NS1, RNA-binding IPR012606 - Ribosomal protein S13/S15, N-terminal IPR023029 - Ribosomal protein S15P

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_010053902.1 40S ribosomal protein S13 [Eucalyptus grandis]

6.1e-76

98.01

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISS DV+ENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_010101741.2 40S ribosomal protein S13 [Morus notabilis]

2.1e-76

98.68

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISS DVDENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_017423846.1 PREDICTED: 40S ribosomal protein S13-like [Vigna angularis]

4.7e-76

98.01

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKISS DVDENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_022157239.1 40S ribosomal protein S13-like [Momordica charantia]

9.4e-77

98.68

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVD+NICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

XP_038874585.1 40S ribosomal protein S13-like [Benincasa hispida]

2.7e-76

98.01

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Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDV++NICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

TrEMBL top hits

e value

%identity

Alignment

A0A218X097 40S ribosomal protein S13

2.9e-76

98.01

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISS DV+ENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1DES0 40S ribosomal protein S13

1.0e-76

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISS DVDENICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1DVX9 40S ribosomal protein S13-like

4.5e-77

98.68

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDVD+NICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1E411 40S ribosomal protein S13-like

2.9e-76

97.35

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDV++NICKFAKKGLTPSQIGVILRDS+GIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

A0A6J1HYG9 40S ribosomal protein S13-like

2.9e-76

97.35

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKRTPPSWLKISSTDV++NICKFAKKGLTPSQIGVILRDS+GIAQV+SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

SwissProt top hits

e value

%identity

Alignment

P46298 40S ribosomal protein S13

3.1e-75

94.04

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGR+HS+GKGIS+SALPY+RT PSWLKISS DVDE ICKFAKKGLTPSQIGVILRDS+GIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLER RKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59223 40S ribosomal protein S13-1

7.0e-75

93.38

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +  DVDE+ICKFAKKGLTPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P59224 40S ribosomal protein S13-2

1.8e-75

94.04

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +S DVDE+ICKFAKKGLTPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

P62302 40S ribosomal protein S13

6.8e-78

96.69

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLKISS DV+ENICKFAKKGLTPSQIGVILRDS+GIAQV SVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Q69UI1 40S ribosomal protein S13-2

7.5e-69

86.75

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGIS+SALPYKRTPPSWLK +++DV+E I K AKKG  PSQIGV+LRD +GI  VKSVTGSKILRILKAHGLAPEIPEDLY LIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYK+TKKLPP WKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Arabidopsis top hits

e value

%identity

Alignment

AT3G60770.1 Ribosomal protein S13/S15

5.0e-76

93.38

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +  DVDE+ICKFAKKGLTPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

AT4G00100.1 ribosomal protein S13A

1.3e-76

94.04

Show/hide

Query:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK
        MGRMHSRGKGISASALPYKR+ PSWLK +S DVDE+ICKFAKKGLTPSQIGVILRDS+GI QVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAV+IRK
Subjt:  MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRK

Query:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
        HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA
Subjt:  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGGTCGTATGCACAGCCGAGGTAAGGGTATTTCTGCATCTGCATTGCCGTACAAGAGAACGCCGCCAAGTTGGCTCAAGATCTCCTCCACGGATGTTGATGAGAATAT
CTGCAAGTTTGCGAAGAAGGGCTTAACCCCATCTCAGATTGGTGTCATTCTTCGTGATTCTTACGGTATTGCTCAGGTCAAAAGTGTTACTGGAAGCAAAATCTTGCGTA
TTCTCAAGGCCCATGGACTGGCACCGGAGATTCCTGAGGATCTGTATCATTTGATCAAGAAAGCTGTTTCTATTCGTAAGCATCTGGAGAGGAACAGGAAGGACAAGGAC
TCCAAGTTCAGATTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAGACCAAGAAGCTTCCACCAGTTTGGAAATACGAGTCAACAACCGCCAG
CACCCTGGTTGCATAA

mRNA sequence

Show/hide mRNA sequence

GCAACTCAGAGTTCGGCTGCCATAGACGATAACCATGGGTCGTATGCACAGCCGAGGTAAGGGTATTTCTGCATCTGCATTGCCGTACAAGAGAACGCCGCCAAGTTGGC
TCAAGATCTCCTCCACGGATGTTGATGAGAATATCTGCAAGTTTGCGAAGAAGGGCTTAACCCCATCTCAGATTGGTGTCATTCTTCGTGATTCTTACGGTATTGCTCAG
GTCAAAAGTGTTACTGGAAGCAAAATCTTGCGTATTCTCAAGGCCCATGGACTGGCACCGGAGATTCCTGAGGATCTGTATCATTTGATCAAGAAAGCTGTTTCTATTCG
TAAGCATCTGGAGAGGAACAGGAAGGACAAGGACTCCAAGTTCAGATTGATTCTTGTTGAGAGCAGAATTCACAGGCTTGCTCGTTACTACAAGAAGACCAAGAAGCTTC
CACCAGTTTGGAAATACGAGTCAACAACCGCCAGCACCCTGGTTGCATAATTTTTCAGTTTGGGCGATTGGTGGCTGCTATATAGGATTCATCATCCATGGGTCTGGTGT
CTGGTGTTATAGTGATCTGTGAGGGTTGTGACTTTGTTTTTATTTATGGCTTCAGTTTTGACTTCAGTTTTTTAATTAAGGAATCTGTAGACTTATTTAGTCAGATTAAA
AATGCAAACTAGAAAAGATTTTGTTGCCCAAGTGGATTTGATCGAAGCCTCGAATAGACTTGCAATTCTGAATGAATTTCATAAACAGTTTTTTTTTTTTAGAATAATTC
TGAAATGCATTAAAATTGGAGAAATCAGAAATCTTTCGTTCCCCATCTTTTCCGTTTAGGCTACGGATTTAGATTAGAATAATTTATTGTATTTTGGTTTCTTCTGTTCT
GGATT

Protein sequence

Show/hide protein sequence

MGRMHSRGKGISASALPYKRTPPSWLKISSTDVDENICKFAKKGLTPSQIGVILRDSYGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKD
SKFRLILVESRIHRLARYYKKTKKLPPVWKYESTTASTLVA

Sed0024697 (gene) of Chayote v1 genome