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Sed0024728 (gene) of Chayote v1 genome

Gene IDSed0024728
OrganismSechium edule (Chayote v1)
DescriptionARM repeat superfamily protein
Genome locationLG04:2593119..2596605
RNA-Seq ExpressionSed0024728
SyntenySed0024728
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR011989 - Armadillo-like helical
IPR016024 - Armadillo-type fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004146451.1 uncharacterized protein LOC101212969 isoform X1 [Cucumis sativus]9.2e-9092.11Show/hide
Query:  MRTIASKLTT--HLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID
        MR IASKLTT  HLCRR+P RTLQFR F+AYDERE+EKEAE+KVGWLLKLIFAGTATF+GYQIFPYMGDNLLQQSVSLL+VKDPLFKRMGASRLARFSID
Subjt:  MRTIASKLTT--HLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID

Query:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        DE+RMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEA GALHKAGAILVIKSTPDSAEDMKVNEYKSNL+KRF DLRYDVSS
Subjt:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

XP_011655026.1 uncharacterized protein LOC101212969 isoform X2 [Cucumis sativus]2.9e-9193.09Show/hide
Query:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
        MR IASKLTTHLCRR+P RTLQFR F+AYDERE+EKEAE+KVGWLLKLIFAGTATF+GYQIFPYMGDNLLQQSVSLL+VKDPLFKRMGASRLARFSIDDE
Subjt:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE

Query:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        +RMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEA GALHKAGAILVIKSTPDSAEDMKVNEYKSNL+KRF DLRYDVSS
Subjt:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

XP_022941868.1 uncharacterized protein LOC111447100 isoform X2 [Cucurbita moschata]4.1e-9092.02Show/hide
Query:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
        MR I SKLT HLCRR+PARTLQFRPF+AYDERE+EKEAE+KVGWLLKLIFAGTATF+GY IFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
Subjt:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE

Query:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        +RMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAED +VNEYKSNL+KRF DL YDVSS
Subjt:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

XP_023526983.1 uncharacterized protein LOC111790336 isoform X2 [Cucurbita pepo subsp. pepo]8.3e-9192.55Show/hide
Query:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
        MR I SKLT HLCRR+PARTLQFRPF+AYDERE+EKEAE+KVGWLLKLIFAGTATF+GY IFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
Subjt:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE

Query:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        +RMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDM+VNEYKSNL+KRF DL YDVSS
Subjt:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

XP_038891777.1 uncharacterized protein LOC120081166 isoform X1 [Benincasa hispida]9.8e-9294.15Show/hide
Query:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
        MR IASKLTTHLCRR+P RTLQFR F+AYDERE+EKEAE+KVGWLLKLIFAGTATF+GYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
Subjt:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE

Query:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNL+KRF DL YDVSS
Subjt:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

TrEMBL top hitse value%identityAlignment
A0A0A0KM85 Uncharacterized protein1.4e-9193.09Show/hide
Query:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
        MR IASKLTTHLCRR+P RTLQFR F+AYDERE+EKEAE+KVGWLLKLIFAGTATF+GYQIFPYMGDNLLQQSVSLL+VKDPLFKRMGASRLARFSIDDE
Subjt:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE

Query:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        +RMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEA GALHKAGAILVIKSTPDSAEDMKVNEYKSNL+KRF DLRYDVSS
Subjt:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

A0A6J1FNN3 uncharacterized protein LOC111447100 isoform X16.4e-8991.05Show/hide
Query:  MRTIASKLTT--HLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID
        MR I SKLT   HLCRR+PARTLQFRPF+AYDERE+EKEAE+KVGWLLKLIFAGTATF+GY IFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID
Subjt:  MRTIASKLTT--HLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID

Query:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        DE+RMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAED +VNEYKSNL+KRF DL YDVSS
Subjt:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

A0A6J1FTA5 uncharacterized protein LOC111447100 isoform X22.0e-9092.02Show/hide
Query:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
        MR I SKLT HLCRR+PARTLQFRPF+AYDERE+EKEAE+KVGWLLKLIFAGTATF+GY IFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
Subjt:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE

Query:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        +RMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAED +VNEYKSNL+KRF DL YDVSS
Subjt:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

A0A6J1K583 uncharacterized protein LOC111491787 isoform X13.2e-8890.53Show/hide
Query:  MRTIASKLTT--HLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID
        MR I SKLT   HLCRR+PARTLQFRPF+AYDERE+EKEAE+KVGWLLKLIFAGTATF+GY IFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID
Subjt:  MRTIASKLTT--HLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID

Query:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        DE+RMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAIS+SDEAVGALHKAGAILVIKSTPDSAED +VNEYKSNL+KRF DL YDVSS
Subjt:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

A0A6J1K968 uncharacterized protein LOC111491787 isoform X29.9e-9091.49Show/hide
Query:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
        MR I SKLT HLCRR+PARTLQFRPF+AYDERE+EKEAE+KVGWLLKLIFAGTATF+GY IFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE
Subjt:  MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDE

Query:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        +RMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAIS+SDEAVGALHKAGAILVIKSTPDSAED +VNEYKSNL+KRF DL YDVSS
Subjt:  RRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G56210.1 ARM repeat superfamily protein4.4e-5857.89Show/hide
Query:  MRTIASKLTTHLCRRQPA--RTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID
        MR + +++  H CR + A  R+  F      D+  +E+EAE+K+GW LK+ FAGTAT++GYQ FPY+GDNL+ QS+SLL VKDPLFKRMGASRL+RF+ID
Subjt:  MRTIASKLTTHLCRRQPA--RTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID

Query:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        DERRMK+VE+GGAQELL+MLG+AKDD+TRKEALKAL A+S S EA   L   GA+ ++KSTP+S ED  ++ YKSN++++  +    VSS
Subjt:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

AT3G56210.2 ARM repeat superfamily protein4.4e-5857.89Show/hide
Query:  MRTIASKLTTHLCRRQPA--RTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID
        MR + +++  H CR + A  R+  F      D+  +E+EAE+K+GW LK+ FAGTAT++GYQ FPY+GDNL+ QS+SLL VKDPLFKRMGASRL+RF+ID
Subjt:  MRTIASKLTTHLCRRQPA--RTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID

Query:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        DERRMK+VE+GGAQELL+MLG+AKDD+TRKEALKAL A+S S EA   L   GA+ ++KSTP+S ED  ++ YKSN++++  +    VSS
Subjt:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

AT3G56210.4 ARM repeat superfamily protein4.4e-5857.89Show/hide
Query:  MRTIASKLTTHLCRRQPA--RTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID
        MR + +++  H CR + A  R+  F      D+  +E+EAE+K+GW LK+ FAGTAT++GYQ FPY+GDNL+ QS+SLL VKDPLFKRMGASRL+RF+ID
Subjt:  MRTIASKLTTHLCRRQPA--RTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID

Query:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        DERRMK+VE+GGAQELL+MLG+AKDD+TRKEALKAL A+S S EA   L   GA+ ++KSTP+S ED  ++ YKSN++++  +    VSS
Subjt:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS

AT3G56210.5 ARM repeat superfamily protein1.4e-5657.29Show/hide
Query:  MRTIASKLTTHLCRRQPA--RTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID
        MR + +++  H CR + A  R+  F      D+  +E+EAE+K+GW LK+ FAGTAT++GYQ FPY+GDNL+ QS+SLL VKDPLFKRMGASRL+RF+ID
Subjt:  MRTIASKLTTHLCRRQPA--RTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSID

Query:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHS--DEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS
        DERRMK+VE+GGAQELL+MLG+AKDD+TRKEALKAL A+S S   EA   L   GA+ ++KSTP+S ED  ++ YKSN++++  +    VSS
Subjt:  DERRMKIVEIGGAQELLNMLGAAKDDRTRKEALKALHAISHS--DEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGCACAATTGCATCGAAGCTAACCACCCATCTCTGCAGAAGACAACCTGCGCGGACCCTGCAATTTCGCCCTTTTGCAGCTTACGATGAAAGGGAGATGGAGAAGGA
GGCTGAAAAAAAAGTAGGATGGTTATTAAAACTGATCTTTGCTGGGACTGCCACATTTATGGGTTACCAGATTTTTCCGTACATGGGGGATAACTTGTTGCAGCAATCTG
TGTCACTCTTGCAAGTCAAGGATCCATTGTTTAAGAGGATGGGAGCATCTAGATTGGCTCGCTTTTCAATTGATGATGAAAGGAGGATGAAAATAGTGGAGATAGGTGGG
GCTCAAGAGCTCTTAAACATGCTTGGAGCTGCCAAAGATGACCGTACACGTAAGGAAGCTTTGAAGGCTTTACATGCTATCTCACATTCAGATGAAGCTGTTGGTGCTTT
GCATAAAGCAGGGGCAATCTTGGTGATTAAATCTACCCCAGATTCAGCTGAAGATATGAAAGTGAACGAGTATAAGTCAAATCTAATTAAGAGATTTAGTGATCTTAGAT
ATGATGTTTCATCTTGA
mRNA sequenceShow/hide mRNA sequence
CTTCAACACAAAGCCATAAATTTTATTTAGCGACTATGCGGGTCGCAGAGTTCACAAACCGGAGTAGACTCACATCGCTGTGACCGGCGGCCGATTCTGTGTTCTCCGCA
ATCATGCGCACAATTGCATCGAAGCTAACCACCCATCTCTGCAGAAGACAACCTGCGCGGACCCTGCAATTTCGCCCTTTTGCAGCTTACGATGAAAGGGAGATGGAGAA
GGAGGCTGAAAAAAAAGTAGGATGGTTATTAAAACTGATCTTTGCTGGGACTGCCACATTTATGGGTTACCAGATTTTTCCGTACATGGGGGATAACTTGTTGCAGCAAT
CTGTGTCACTCTTGCAAGTCAAGGATCCATTGTTTAAGAGGATGGGAGCATCTAGATTGGCTCGCTTTTCAATTGATGATGAAAGGAGGATGAAAATAGTGGAGATAGGT
GGGGCTCAAGAGCTCTTAAACATGCTTGGAGCTGCCAAAGATGACCGTACACGTAAGGAAGCTTTGAAGGCTTTACATGCTATCTCACATTCAGATGAAGCTGTTGGTGC
TTTGCATAAAGCAGGGGCAATCTTGGTGATTAAATCTACCCCAGATTCAGCTGAAGATATGAAAGTGAACGAGTATAAGTCAAATCTAATTAAGAGATTTAGTGATCTTA
GATATGATGTTTCATCTTGACAAGTAAGATTCTTCTTTCTTTTATTTATCTTTTAGCATAGAATTGCTCTCTCATCTTCATCATGGGGGAAATTTGGATTTTTTTTTTCC
TCCAGTCAAGATACTTGGTTGTGATATTGTCTTCACAAAATGCCTCTTAAAACCATGGATAGATCTTGGAAAGGGTTGAGATGTTGCGACTAGTTTTGTATTTTGGGAAT
AAAATCGAGTAAATTTACAC
Protein sequenceShow/hide protein sequence
MRTIASKLTTHLCRRQPARTLQFRPFAAYDEREMEKEAEKKVGWLLKLIFAGTATFMGYQIFPYMGDNLLQQSVSLLQVKDPLFKRMGASRLARFSIDDERRMKIVEIGG
AQELLNMLGAAKDDRTRKEALKALHAISHSDEAVGALHKAGAILVIKSTPDSAEDMKVNEYKSNLIKRFSDLRYDVSS