CuGenDBv2

Gene ID	Sed0024730
Organism	Sechium edule (Chayote v1)
Description	GRAS domain-containing protein
Genome location	LG04:33499492..33500171
RNA-Seq Expression	Sed0024730
Synteny	Sed0024730
Gene Ontology terms	NA
InterPro domains	IPR005202 - Transcription factor GRAS IPR030013 - Scarecrow-like protein 8

Homology

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GenBank top hits

e value

%identity

Alignment

ADN33769.1 GRAS family transcription factor [Cucumis melo subsp. melo]

8.9e-30

50.53

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Query:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP
        +P RDLQ+LESEKKMMNH L+ELE++LLED N+++DGSD+VSVIT  +  + + I                                V    SD    + 
Subjt:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP

Query:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV
        +V EAATAISEGKLE +DEILAP VKISNARG+SVQRLAEYM+ ALKS+V    F            +AATQ LYDVSPCFKLAFM   +
Subjt:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV

KAA0042599.1 scarecrow-like protein 8 [Cucumis melo var. makuwa]

8.9e-30

50.53

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Query:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP
        +P RDLQ+LESEKKMMNH L+ELE++LLED N+++DGSD+VSVIT  +  + + I                                V    SD    + 
Subjt:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP

Query:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV
        +V EAATAISEGKLE +DEILAP VKISNARG+SVQRLAEYM+ ALKS+V    F            +AATQ LYDVSPCFKLAFM   +
Subjt:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV

XP_008437524.1 PREDICTED: scarecrow-like protein 8 [Cucumis melo]

8.9e-30

50.53

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Query:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP
        +P RDLQ+LESEKKMMNH L+ELE++LLED N+++DGSD+VSVIT  +  + + I                                V    SD    + 
Subjt:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP

Query:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV
        +V EAATAISEGKLE +DEILAP VKISNARG+SVQRLAEYM+ ALKS+V    F            +AATQ LYDVSPCFKLAFM   +
Subjt:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV

XP_011654649.1 scarecrow-like protein 8 [Cucumis sativus]

2.0e-29

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Query:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP
        +P RDLQ+LESEKKMMNH L+ELE++LLED N+++DGSD+VSVIT  +  + + I                                V    SD    + 
Subjt:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP

Query:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV
        +V EAATAIS+GKLE +DEILAP VKISNARG+SVQRLAEYM+ ALKS+V    F            +AATQ LYDVSPCFKLAFM   +
Subjt:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV

XP_022958035.1 scarecrow-like protein 8 [Cucurbita moschata]

2.6e-29

50.26

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Query:  AVVPARDLQNLESE-KKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV---------------------------------VVGGLSDR
        + V  RDLQNL+SE KKMMNH L+ELE+QLLED N+++DGSD+ SVIT  +  + + +                                  V    SD 
Subjt:  AVVPARDLQNLESE-KKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV---------------------------------VVGGLSDR

Query:  RFVEPTVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCRRWRRF-----TAATQSLYDVSPCFKLAFMVGKV
           + +V EAA AISEGKL+VVDEILAP VKISNARGSSVQRLAEYM+FALKS+V    F            +AATQSLYDVSPCFKLAFM   +
Subjt:  RFVEPTVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCRRWRRF-----TAATQSLYDVSPCFKLAFMVGKV

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KK19 GRAS domain-containing protein

9.6e-30

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Query:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP
        +P RDLQ+LESEKKMMNH L+ELE++LLED N+++DGSD+VSVIT  +  + + I                                V    SD    + 
Subjt:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP

Query:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV
        +V EAATAIS+GKLE +DEILAP VKISNARG+SVQRLAEYM+ ALKS+V    F            +AATQ LYDVSPCFKLAFM   +
Subjt:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV

A0A1S3AUC8 scarecrow-like protein 8

4.3e-30

50.53

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Query:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP
        +P RDLQ+LESEKKMMNH L+ELE++LLED N+++DGSD+VSVIT  +  + + I                                V    SD    + 
Subjt:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP

Query:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV
        +V EAATAISEGKLE +DEILAP VKISNARG+SVQRLAEYM+ ALKS+V    F            +AATQ LYDVSPCFKLAFM   +
Subjt:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV

A0A5A7TML4 Scarecrow-like protein 8

4.3e-30

50.53

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Query:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP
        +P RDLQ+LESEKKMMNH L+ELE++LLED N+++DGSD+VSVIT  +  + + I                                V    SD    + 
Subjt:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP

Query:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV
        +V EAATAISEGKLE +DEILAP VKISNARG+SVQRLAEYM+ ALKS+V    F            +AATQ LYDVSPCFKLAFM   +
Subjt:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV

A0A6J1H2B4 scarecrow-like protein 8

1.2e-29

50.26

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Query:  AVVPARDLQNLESE-KKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV---------------------------------VVGGLSDR
        + V  RDLQNL+SE KKMMNH L+ELE+QLLED N+++DGSD+ SVIT  +  + + +                                  V    SD 
Subjt:  AVVPARDLQNLESE-KKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV---------------------------------VVGGLSDR

Query:  RFVEPTVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCRRWRRF-----TAATQSLYDVSPCFKLAFMVGKV
           + +V EAA AISEGKL+VVDEILAP VKISNARGSSVQRLAEYM+FALKS+V    F            +AATQSLYDVSPCFKLAFM   +
Subjt:  RFVEPTVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCRRWRRF-----TAATQSLYDVSPCFKLAFMVGKV

E5GBC7 GRAS family transcription factor

4.3e-30

50.53

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Query:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP
        +P RDLQ+LESEKKMMNH L+ELE++LLED N+++DGSD+VSVIT  +  + + I                                V    SD    + 
Subjt:  VPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIV-------------------------------VVGGLSDRRFVEP

Query:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV
        +V EAATAISEGKLE +DEILAP VKISNARG+SVQRLAEYM+ ALKS+V    F            +AATQ LYDVSPCFKLAFM   +
Subjt:  TVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCR-----RWRRFTAATQSLYDVSPCFKLAFMVGKV

SwissProt top hits

e value

%identity

Alignment

Q9FYR7 Scarecrow-like protein 8

2.3e-12

32.57

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Query:  PAVVPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIVV-----------------------VGGLSDRRFVEPTVTEA
        P + P   +QN   E + M + L+ELE+QLL+D ++E  G D VSVIT  + D+   +V                            +       TV E 
Subjt:  PAVVPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIVV-----------------------VGGLSDRRFVEPTVTEA

Query:  ATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCRRWRRFTAATQSLYDVSPCFKLAF
        ATAI+EGK E+  EILA   +  N   +S ++L ++M+ AL+S++         +    +TQ LY++SPCFKL F
Subjt:  ATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCRRWRRFTAATQSLYDVSPCFKLAF

Arabidopsis top hits

e value

%identity

Alignment

AT5G52510.1 SCARECROW-like 8

1.6e-13

32.57

Show/hide

Query:  PAVVPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIVV-----------------------VGGLSDRRFVEPTVTEA
        P + P   +QN   E + M + L+ELE+QLL+D ++E  G D VSVIT  + D+   +V                            +       TV E 
Subjt:  PAVVPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIVV-----------------------VGGLSDRRFVEPTVTEA

Query:  ATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCRRWRRFTAATQSLYDVSPCFKLAF
        ATAI+EGK E+  EILA   +  N   +S ++L ++M+ AL+S++         +    +TQ LY++SPCFKL F
Subjt:  ATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCRRWRRFTAATQSLYDVSPCFKLAF

Sequences

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CDS sequence

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ATGGGTGGGGTCCCCTGTACTTTTCAATTTCAAAATAATAAAAGTGGGGTCCACCACTACTTCACTCCTCCCTCTTTTTCCCTTCCAAATCCAATTTGCATTTCTCTGCC
CTCGGCGTCGATTTTTCGTCCGGCAGTCGTTCCGGCGAGGGACTTGCAGAATTTGGAATCGGAGAAGAAGATGATGAACCATTGGCTTAAGGAGTTGGAGAGACAGCTTC
TTGAAGATAACAATGAGGAGGAGGATGGAAGCGATTCGGTTTCTGTGATTACGAAAGTCAGTTTCGACTTCGCCGACTTCATCGTTGTCGTCGGTGGCCTCTCCGACCGC
CGATTCGTGGAACCAACTGTCACTGAGGCTGCGACGGCGATTTCAGAAGGGAAATTGGAGGTTGTGGATGAGATTCTTGCGCCGGACGTTAAGATTTCGAATGCGAGGGG
AAGTTCTGTGCAGAGGTTGGCAGAGTACATGATTTTCGCGTTGAAATCGCAGGTGATCCGACGAAATTTTTGCCGCCGGTGGCGGAGATTTACGGCGGCGACTCAGTCGC
TTTACGACGTTTCTCCCTGCTTCAAGCTCGCATTCATGGTTGGGAAAGTGGGGTCAATTTAA

mRNA sequence

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Protein sequence

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MGGVPCTFQFQNNKSGVHHYFTPPSFSLPNPICISLPSASIFRPAVVPARDLQNLESEKKMMNHWLKELERQLLEDNNEEEDGSDSVSVITKVSFDFADFIVVVGGLSDR
RFVEPTVTEAATAISEGKLEVVDEILAPDVKISNARGSSVQRLAEYMIFALKSQVIRRNFCRRWRRFTAATQSLYDVSPCFKLAFMVGKVGSI

Sed0024730 (gene) of Chayote v1 genome