; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0024738 (gene) of Chayote v1 genome

Gene IDSed0024738
OrganismSechium edule (Chayote v1)
DescriptionTATA-binding protein-associated factor 2N
Genome locationLG07:5893199..5895761
RNA-Seq ExpressionSed0024738
SyntenySed0024738
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6593432.1 hypothetical protein SDJN03_12908, partial [Cucurbita argyrosperma subsp. sororia]2.9e-6573.84Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG-----RGRNIP----------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDE
        MNRPGDWNCRSCQH+NFQRR+CCQRCGES+F    G+F G     RGR+I           ASPGSDVR GDWYCGV NCGTHNFANRSSCFVCGAFKDE
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG-----RGRNIP----------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDE

Query:  TAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF
        +AA AA  GGFDFD++ RGSR+ GFG+NG+    GG SWKSGDWIC RSGCNVHNFASRMECFRCNAPRDSF
Subjt:  TAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF

XP_022964373.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita moschata]2.9e-6573.84Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG-----RGRNIP----------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDE
        MNRPGDWNCRSCQH+NFQRR+CCQRCGES+F    G+F G     RGR+I           ASPGSDVR GDWYCGV NCGTHNFANRSSCFVCGAFKDE
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG-----RGRNIP----------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDE

Query:  TAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF
        +AA AA  GGFDFD++ RGSR+ GFG+NG+    GG SWKSGDWIC RSGCNVHNFASRMECFRCNAPRDSF
Subjt:  TAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF

XP_023000400.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]2.4e-6472.99Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG--RGRNIP---------------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFK
        MNRPGDWNCRSCQH+NFQRR+CCQRCGES+F    GVF G  RGR+I                ASPGSDVR GDWYCGV NCGTHNFANRSSCFVCGAFK
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG--RGRNIP---------------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFK

Query:  DETAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF
        DE+AA AA  GGFD D++ RGSR+ GFGTNG+    GG SWKSGDWIC RSGCNVHNFASRMECFRCNAPRD F
Subjt:  DETAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF

XP_023514793.1 uncharacterized RNA-binding protein C17H9.04c-like isoform X2 [Cucurbita pepo subsp. pepo]2.9e-6573.84Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG-----RGRNIP----------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDE
        MNRPGDWNCRSCQH+NFQRR+CCQRCGES+F    G+F G     RGR+I           ASPGSDVR GDWYCGV NCGTHNFANRSSCFVCGAFKDE
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG-----RGRNIP----------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDE

Query:  TAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF
        +AA AA  GGFDFD++ RGSRT GFG+NG+    GG SWKSGDWIC RSGCNVHNFASRMECFRCNAPRD F
Subjt:  TAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF

XP_038899251.1 uncharacterized RNA-binding protein C17H9.04c-like [Benincasa hispida]3.2e-6475.61Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESK----FGVFAGRGRNIPA-------SPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAAAAV
        MNRPGDWNCRSCQH+NFQRR+CCQRCGE K     GVF GRGR IP+       SPGSDVR GDWYCGVGNCGTHNFANRS+CF CGAFKDE+AAAA   
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESK----FGVFAGRGRNIPA-------SPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAAAAV

Query:  GGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF
        GGFDFD++ RGSR+ GFG++ N  RGG  SW SGDWIC RSGCNVHNFASRMECFRCNAPRD F
Subjt:  GGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF

TrEMBL top hitse value%identityAlignment
A0A0A0K718 Uncharacterized protein2.5e-6270.66Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESK------FGVFAGR------GRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAAAA
        MNRPGDWNCRSCQH+NFQRRDCCQRCGE K       GVF+ R      G  +  SPGSDVR GDWYCGVGNCGTHNFANRS+CF CGAFKDE+AA+A A
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESK------FGVFAGR------GRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAAAA

Query:  V--GGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF
           GGFDFD + R  R+ GFG++   SRG    W SGDWIC RSGCNVHNFASRMECFRCNAPRDSF
Subjt:  V--GGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF

A0A5D3CJI6 Transcription initiation factor TFIID subunit 15b-like6.9e-5767.06Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESK------FGVFAGR-------GRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAA-
        MNRPGDWNCRSCQH+NFQRR+CCQRCGE K       GVF+GR       G  I  SPGSDVR GDWYCGV NCGTHNFANRS+CF CGAFKDE+AA+A 
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESK------FGVFAGR-------GRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAA-

Query:  ---AAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF
              GGFDFD++ R  R+ G      +SRG    W SGDWIC R GCNVHNFASRMECFRCNAPRDSF
Subjt:  ---AAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF

A0A6J1DB61 transcription initiation factor TFIID subunit 15-like2.5e-6274.85Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRG--------RNIP------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAA-
        MNRPGDW+CRSCQH+NFQRR+CCQRCG+SKFGVFAG G         ++P      ASPGSDVR GDWYCGVGNCGTHNFA+RSSCF CGAFKDE+AAA 
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRG--------RNIP------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAA-

Query:  AAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDS
        A A GGFDFD+S R SR  GFGT  NASR G  SWKSGDWIC RSGCN HNFASRMECFRCN PRDS
Subjt:  AAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDS

A0A6J1HKM2 uncharacterized RNA-binding protein C17H9.04c-like1.4e-6573.84Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG-----RGRNIP----------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDE
        MNRPGDWNCRSCQH+NFQRR+CCQRCGES+F    G+F G     RGR+I           ASPGSDVR GDWYCGV NCGTHNFANRSSCFVCGAFKDE
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG-----RGRNIP----------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDE

Query:  TAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF
        +AA AA  GGFDFD++ RGSR+ GFG+NG+    GG SWKSGDWIC RSGCNVHNFASRMECFRCNAPRDSF
Subjt:  TAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF

A0A6J1KI84 uncharacterized RNA-binding protein C17H9.04c-like1.2e-6472.99Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG--RGRNIP---------------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFK
        MNRPGDWNCRSCQH+NFQRR+CCQRCGES+F    GVF G  RGR+I                ASPGSDVR GDWYCGV NCGTHNFANRSSCFVCGAFK
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKF----GVFAG--RGRNIP---------------ASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFK

Query:  DETAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF
        DE+AA AA  GGFD D++ RGSR+ GFGTNG+    GG SWKSGDWIC RSGCNVHNFASRMECFRCNAPRD F
Subjt:  DETAAAAAAVGGFDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c3.6e-1032Show/hide
Query:  RPGDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRGRNIPASPGSDVRLGDWYCG--VGNCGTHNFANRSSCFVCGAFKDETAAAAAAVGGFDFDLSARG
        RPGDWNC  C   NFQRR  C RC       F G   ++ A+ GS+    D+  G   GN  +H  AN              +   +       DL  + 
Subjt:  RPGDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRGRNIPASPGSDVRLGDWYCG--VGNCGTHNFANRSSCFVCGAFKDETAAAAAAVGGFDFDLSARG

Query:  SRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPR
                + + S GG   +++GDW C   GC  HNFA  + C RC A R
Subjt:  SRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPR

Arabidopsis top hitse value%identityAlignment
AT1G48570.1 zinc finger (Ran-binding) family protein8.8e-0430.14Show/hide
Query:  RPGDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRGRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVC
        + GDWNC  C +MNF     C+ C E +    A                GDW C   +C   NF    +C  C
Subjt:  RPGDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRGRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVC

AT2G17975.1 zinc finger (Ran-binding) family protein5.0e-1532.05Show/hide
Query:  RPGDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRGRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAAAAVGGFDFDLS----A
        R GDW C  C++ N+  R  C RC + +  +      N    P    R+GDW C    C  +N+A+R  C  CG  K+  A +A A+ G           
Subjt:  RPGDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRGRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAAAAVGGFDFDLS----A

Query:  RGSRT-------LGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCN
        RG  +       L F +N          W+SGDWIC    C  HN++SR++C +CN
Subjt:  RGSRT-------LGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCN

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein1.5e-3244.22Show/hide
Query:  GDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRGRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAAAAVGGFDFDLSARGSRTL
        GDW C +CQH NF++R+ CQ+CG  KFG   G   +      ++V  GDWYCG  NCG+HN+A+R+SC+ CG  K E            +     G++ +
Subjt:  GDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRGRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAAAAVGGFDFDLSARGSRTL

Query:  GFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRD
         +G +G A   G   WK+GDW+CPR GC VHN+ASR ECF+C   RD
Subjt:  GFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRD

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein3.6e-5060.61Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESK----------FGVFAGRGRN-IPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAA--AAA
        M+RPGDWNCRSC H+NFQRRD CQRCG+S+          FG F GR  +    + GSDVR GDWYC VGNCGTHNFA+RS+CF CG FKDET A     
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESK----------FGVFAGRGRN-IPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAA--AAA

Query:  AVGG-FDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRD
         +GG   FD     SR  G         GG  SWKSGDWIC R GCN HNFASRMECFRCNAPRD
Subjt:  AVGG-FDFDLSARGSRTLGFGTNGNASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRD

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein8.9e-4960Show/hide
Query:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKFG--------VFAGR--GRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDE-TAAAAAAV
        MNRPGDWNCR C H+NFQRRD CQRC E + G         F GR    +   + G DVR GDWYC +G+CGTHNFANRSSCF CGA KDE + ++AAA 
Subjt:  MNRPGDWNCRSCQHMNFQRRDCCQRCGESKFG--------VFAGR--GRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDE-TAAAAAAV

Query:  GGFDFDLSARGSRTLGFGTNGNASRGGGFS---WKSGDWICPRSGCNVHNFASRMECFRCNAPRD
         GF  D++    R L FG  G++S GGG     WKSGDWICPRSGCN HNFASR ECFRCNAP++
Subjt:  GGFDFDLSARGSRTLGFGTNGNASRGGGFS---WKSGDWICPRSGCNVHNFASRMECFRCNAPRD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAGACCGGGAGATTGGAACTGCAGATCATGCCAGCACATGAACTTCCAACGGCGGGATTGCTGCCAACGGTGCGGGGAATCCAAATTCGGGGTGTTTGCCGGCAG
AGGAAGGAACATTCCGGCGTCGCCGGGATCGGACGTCCGCCTCGGTGACTGGTACTGCGGCGTCGGGAACTGCGGAACCCACAACTTTGCGAACCGGTCGAGCTGTTTCG
TATGCGGAGCGTTTAAGGATGAGACAGCCGCCGCCGCCGCCGCCGTTGGAGGGTTCGATTTTGATTTGTCGGCTCGTGGATCGAGGACCTTAGGATTTGGAACCAATGGC
AATGCCTCACGTGGCGGCGGCTTTTCTTGGAAGTCTGGTGACTGGATTTGTCCCAGGTCAGGTTGCAATGTACATAACTTTGCAAGCAGAATGGAATGTTTCAGATGCAA
TGCTCCAAGAGACTCATTTTAA
mRNA sequenceShow/hide mRNA sequence
GTTTCATCACTTAGCTCTCTCTACTCAATTCTTCAAGTTTTGCTTCCACTCTTTTTATGGTTTTTTAAGTTTATTGTCTTTTACTTGTTTGTACTTAGGAGAGAAATCAG
AATTTTCACAAGATCGGCGGAGAAATGAACAGACCGGGAGATTGGAACTGCAGATCATGCCAGCACATGAACTTCCAACGGCGGGATTGCTGCCAACGGTGCGGGGAATC
CAAATTCGGGGTGTTTGCCGGCAGAGGAAGGAACATTCCGGCGTCGCCGGGATCGGACGTCCGCCTCGGTGACTGGTACTGCGGCGTCGGGAACTGCGGAACCCACAACT
TTGCGAACCGGTCGAGCTGTTTCGTATGCGGAGCGTTTAAGGATGAGACAGCCGCCGCCGCCGCCGCCGTTGGAGGGTTCGATTTTGATTTGTCGGCTCGTGGATCGAGG
ACCTTAGGATTTGGAACCAATGGCAATGCCTCACGTGGCGGCGGCTTTTCTTGGAAGTCTGGTGACTGGATTTGTCCCAGGTCAGGTTGCAATGTACATAACTTTGCAAG
CAGAATGGAATGTTTCAGATGCAATGCTCCAAGAGACTCATTTTAAAATTTTAGTTATGAATTTTCATCAAAATGTTTTAGGTTTGATTTTGATTGTGTGTTCCGAACTT
TATGGTCACATTGAGTTGCTTATTGGTTCAAGAATCTCTCTTTTGATTTTGTTATAATATATATTGTATTTTCCTTTTCTTTTGTTAATCTATTTTTTTTCAATTTAACA
ACA
Protein sequenceShow/hide protein sequence
MNRPGDWNCRSCQHMNFQRRDCCQRCGESKFGVFAGRGRNIPASPGSDVRLGDWYCGVGNCGTHNFANRSSCFVCGAFKDETAAAAAAVGGFDFDLSARGSRTLGFGTNG
NASRGGGFSWKSGDWICPRSGCNVHNFASRMECFRCNAPRDSF