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Sed0024770 (gene) of Chayote v1 genome

Gene IDSed0024770
OrganismSechium edule (Chayote v1)
DescriptionMini zinc finger
Genome locationLG01:17719556..17720673
RNA-Seq ExpressionSed0024770
SyntenySed0024770
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0000976 - transcription regulatory region sequence-specific DNA binding (molecular function)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR006456 - ZF-HD homeobox protein, Cys/His-rich dimerisation domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036083.1 mini zinc finger protein 1 [Cucumis melo var. makuwa]4.9e-3476.92Show/hide
Query:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE
        MMKKRQVV KRSS    SS+SS         +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGSNGAL CAACGCHRNFHRRE ++EVVCE
Subjt:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

KAE8124032.1 hypothetical protein FH972_018944 [Carpinus fangiana]4.6e-3279.79Show/hide
Query:  MKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP
        MKKRQVV K+  S R SS+SSTSSS VR  VRY ECQKNHAANIGGYAVDGC EF+A+GE+G+NGAL CAACGCHRNFHRRE +TEVVCEYSPP
Subjt:  MKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP

XP_004137410.1 mini zinc finger protein 1 [Cucumis sativus]1.9e-3375.96Show/hide
Query:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE
        MMKKRQVV KRSS    SS+SS         +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGS+GAL CAACGCHRNFHRRE ++EVVCE
Subjt:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

XP_008442199.1 PREDICTED: mini zinc finger protein 1 [Cucumis melo]4.9e-3476.92Show/hide
Query:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE
        MMKKRQVV KRSS    SS+SS         +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGSNGAL CAACGCHRNFHRRE ++EVVCE
Subjt:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

XP_022949221.1 mini zinc finger protein 1 [Cucurbita moschata]1.6e-3787.63Show/hide
Query:  MMKKRQVVAKRS--SSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP
        MMKKRQV+ KR+  SSNRNSS SSTSSSAVR++VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGAL CAACGCHRNFHRRE +TEVVCEY PP
Subjt:  MMKKRQVVAKRS--SSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP

TrEMBL top hitse value%identityAlignment
A0A1S3B557 mini zinc finger protein 12.4e-3476.92Show/hide
Query:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE
        MMKKRQVV KRSS    SS+SS         +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGSNGAL CAACGCHRNFHRRE ++EVVCE
Subjt:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

A0A5A7SZK7 Mini zinc finger protein 12.4e-3476.92Show/hide
Query:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE
        MMKKRQVV KRSS    SS+SS         +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGSNGAL CAACGCHRNFHRRE ++EVVCE
Subjt:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

A0A5D3BJJ4 Mini zinc finger protein 12.4e-3476.92Show/hide
Query:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE
        MMKKRQVV KRSS    SS+SS         +SSS VR+VVRYGECQKNHAANIGGYAVDGC EFLA GEEGSNGAL CAACGCHRNFHRRE ++EVVCE
Subjt:  MMKKRQVVAKRSSSNRNSSNSS---------TSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCE

Query:  YSPP
        YSPP
Subjt:  YSPP

A0A6J1GBE8 mini zinc finger protein 17.8e-3887.63Show/hide
Query:  MMKKRQVVAKRS--SSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP
        MMKKRQV+ KR+  SSNRNSS SSTSSSAVR++VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGAL CAACGCHRNFHRRE +TEVVCEY PP
Subjt:  MMKKRQVVAKRS--SSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP

A0A6J1K9G7 mini zinc finger protein 17.8e-3887.63Show/hide
Query:  MMKKRQVVAKRS--SSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP
        MMKKRQV+ KR+  SSNRNSS SSTSSSAVR++VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGAL CAACGCHRNFHRRE +TEVVCEY PP
Subjt:  MMKKRQVVAKRS--SSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP

SwissProt top hitse value%identityAlignment
Q0J5F8 Mini zinc finger protein 41.6e-1969.49Show/hide
Query:  VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVC
        VRYGEC++NHAA +GG+AVDGC EFLA GEEG+ GAL CAACGCHR+FHRR    +  C
Subjt:  VRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVC

Q2Q493 Mini zinc finger protein 34.6e-2771.28Show/hide
Query:  MKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP
        MKKRQVV K+    R SS + TSSS   + VRY ECQKNHAANIGGYAVDGC EF+A+   G + AL CAACGCHRNFHRRE DTEVVCEYSPP
Subjt:  MKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP

Q9CA51 Mini zinc finger protein 19.0e-3170Show/hide
Query:  MMKKRQVVAKRSSSNRNSSN-----SSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP
        MMKKRQ+V K+ S N N+S+     SS+SSS+  + VRY ECQKNHAANIGGYAVDGC EF+A G EG+  AL CAACGCHRNFHR+E DTEVVCEYSPP
Subjt:  MMKKRQVVAKRSSSNRNSSN-----SSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP

Q9LJW5 Mini zinc finger protein 21.4e-2864.95Show/hide
Query:  MKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLAN-GEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPPPN
        M+KRQVV +R+S    S +SST+SS     VRYGECQKNHAA +GGYAVDGC EF+A+ GEEG+  AL CAACGCHR+FHRRE +TEVVC+ + PP+
Subjt:  MKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLAN-GEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPPPN

Q9SB61 Zinc-finger homeodomain protein 21.1e-1755.13Show/hide
Query:  SSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDT------EVVCEYSPPP
        S  V   +RY EC KNHA NIGG+AVDGC EF+ +GE+G+  AL CAACGCHRNFHR+E ++       V   Y+ PP
Subjt:  SSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDT------EVVCEYSPPP

Arabidopsis top hitse value%identityAlignment
AT1G18835.1 mini zinc finger3.3e-2871.28Show/hide
Query:  MKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP
        MKKRQVV K+    R SS + TSSS   + VRY ECQKNHAANIGGYAVDGC EF+A+   G + AL CAACGCHRNFHRRE DTEVVCEYSPP
Subjt:  MKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP

AT1G74660.1 mini zinc finger 16.4e-3270Show/hide
Query:  MMKKRQVVAKRSSSNRNSSN-----SSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP
        MMKKRQ+V K+ S N N+S+     SS+SSS+  + VRY ECQKNHAANIGGYAVDGC EF+A G EG+  AL CAACGCHRNFHR+E DTEVVCEYSPP
Subjt:  MMKKRQVVAKRSSSNRNSSN-----SSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPP

AT2G02540.1 homeobox protein 215.2e-1859.38Show/hide
Query:  VVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSP
        V++Y EC KNHAA +GG A+DGC EF+ +GEEGS  AL C+ C CHRNFHRRE + E    +SP
Subjt:  VVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSP

AT3G28917.1 mini zinc finger 21.0e-2964.95Show/hide
Query:  MKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLAN-GEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPPPN
        M+KRQVV +R+S    S +SST+SS     VRYGECQKNHAA +GGYAVDGC EF+A+ GEEG+  AL CAACGCHR+FHRRE +TEVVC+ + PP+
Subjt:  MKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLAN-GEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPPPN

AT4G24660.1 homeobox protein 228.1e-1955.13Show/hide
Query:  SSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDT------EVVCEYSPPP
        S  V   +RY EC KNHA NIGG+AVDGC EF+ +GE+G+  AL CAACGCHRNFHR+E ++       V   Y+ PP
Subjt:  SSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDT------EVVCEYSPPP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGAAGAAAAGGCAAGTAGTAGCTAAAAGATCATCCTCAAACAGAAACAGCAGCAACAGCAGTACTTCATCTTCAGCAGTGAGAAATGTTGTTAGATATGGAGAATG
TCAAAAGAATCATGCTGCCAATATTGGTGGATATGCTGTCGATGGGTGCACCGAGTTCTTGGCGAATGGAGAAGAAGGCTCTAATGGAGCTCTCAATTGTGCTGCCTGTG
GCTGCCACAGGAATTTCCATAGAAGAGAATTTGATACTGAAGTGGTTTGTGAGTACTCACCTCCTCCCAATGCTTGA
mRNA sequenceShow/hide mRNA sequence
ATTGTTTTGCCACTATTTAGTAAAGCCCTATAAAAAAAAGTTGTGTACTTGCTAGGGTTTAGGGAGATAAAGGCATAATCCTCAGTATCATAGTCAATCCTTTAAAAAGA
AATTCTTCTACTAGATTCCTCCTCCCTCTCACTACTTTTGATTGAGATTTTAATGAGTGAGGAAATAAAAAAGAAACCCCCAAAGGCAAAGGCATATTTCAGGTAAGCTT
AAGCTTAGGGTTATGATGAAGAAAAGGCAAGTAGTAGCTAAAAGATCATCCTCAAACAGAAACAGCAGCAACAGCAGTACTTCATCTTCAGCAGTGAGAAATGTTGTTAG
ATATGGAGAATGTCAAAAGAATCATGCTGCCAATATTGGTGGATATGCTGTCGATGGGTGCACCGAGTTCTTGGCGAATGGAGAAGAAGGCTCTAATGGAGCTCTCAATT
GTGCTGCCTGTGGCTGCCACAGGAATTTCCATAGAAGAGAATTTGATACTGAAGTGGTTTGTGAGTACTCACCTCCTCCCAATGCTTGAATTTTAATTTTCATTATATAT
CATACCCTACATCAAAGTCATTAATACCCTTTTTATCTTTATATATATGTATATTTATTCATGTCACCAAACAATGGTTGTGGTCATTTTTTTTTTTTTTGAAAACCGGG
AACTTGGAGCTTCGCTCTCCTATATTCGGGGCACCACTGGCCTGTCCTAGACTGTGACACCGGGATACTTCGAAGAGTATTCTAGTTTAAGAGCTTTTCAGCTGCCTCGA
ACCAGTAATCTCTCAAGAAAACATGTCTTGAAGTCCTTAGCCTCAACCGTTGGGCTGTCCCTTGAGGACAACAATGATTGTGATCATTTGAAGAAACATAATTTGTAATT
AAATTGTGTAATTCATTTTCCTATTTTAATGTGCTGCTGTGTTTCTTCTTCTTCTTCCCACTTTCTGTAAAGTCTCTTCTTTGAATAGAAAATTACTGTATGTGATTCAA
AAGAAAAGACCAAAAGCAAAAGTAAAACACTGCCGTATTGTCAACAACTTCTTATTTCTTGACCCTTTCTCCCTGTTCTTTGATTCTCTTTTTTCTTCTTTTGTAATCTT
CCTACCCAATTACCAAAT
Protein sequenceShow/hide protein sequence
MMKKRQVVAKRSSSNRNSSNSSTSSSAVRNVVRYGECQKNHAANIGGYAVDGCTEFLANGEEGSNGALNCAACGCHRNFHRREFDTEVVCEYSPPPNA