CuGenDBv2

Gene ID	Sed0024790
Organism	Sechium edule (Chayote v1)
Description	40S ribosomal protein S26
Genome location	LG04:2491713..2495650
RNA-Seq Expression	Sed0024790
Synteny	Sed0024790
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0019430 - removal of superoxide radicals (biological process) GO:0016021 - integral component of membrane (cellular component) GO:0022627 - cytosolic small ribosomal subunit (cellular component) GO:0003729 - mRNA binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004784 - superoxide dismutase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000892 - Ribosomal protein S26e IPR038551 - Ribosomal protein S26e superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6599946.1 40S ribosomal protein S26-1, partial [Cucurbita argyrosperma subsp. sororia]

7.8e-64

94.03

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPK------PGQPGQAPRPVGAGNPAR
        F+RRR+DQPK      PGQPGQAPRPVGAGNPAR
Subjt:  FIRRREDQPK------PGQPGQAPRPVGAGNPAR

XP_004146441.1 40S ribosomal protein S26-1 [Cucumis sativus]

1.9e-65

99.22

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPAR
        FIRRREDQ KPGQPGQAPRPVGAGNPAR
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPAR

XP_022941874.1 40S ribosomal protein S26-3-like [Cucurbita moschata]

3.5e-64

96.18

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPK---PGQPGQAPRPVGAGNPAR
        F+RRR+DQPK   PGQPGQAPRPVGAGNPAR
Subjt:  FIRRREDQPK---PGQPGQAPRPVGAGNPAR

XP_022943123.1 40S ribosomal protein S26-1-like [Cucurbita moschata]

1.6e-64

97.66

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPAR
        FIRRR+DQPKPGQPGQAPRP GAG PAR
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPAR

XP_023529394.1 40S ribosomal protein S26-1-like [Cucurbita pepo subsp. pepo]

1.6e-64

97.66

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPAR
        FIRRR+DQPKPGQPGQAPRP GAG PAR
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPAR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KM45 40S ribosomal protein S26

9.0e-66

99.22

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPAR
        FIRRREDQ KPGQPGQAPRPVGAGNPAR
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPAR

A0A1S3C5M1 40S ribosomal protein S26

9.0e-66

99.22

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPAR
        FIRRREDQ KPGQPGQAPRPVGAGNPAR
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPAR

A0A5A7VIJ0 40S ribosomal protein S26

9.0e-66

99.22

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPAR
        FIRRREDQ KPGQPGQAPRPVGAGNPAR
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPAR

A0A6J1FWD9 40S ribosomal protein S26

7.6e-65

97.66

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPAR
        FIRRR+DQPKPGQPGQAPRP GAG PAR
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPAR

A0A6J1JIN0 40S ribosomal protein S26

7.6e-65

97.66

Show/hide

Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPAR
        FIRRR+DQPKPGQPGQAPRP GAG PAR
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPAR

SwissProt top hits

e value

%identity

Alignment

O45499 40S ribosomal protein S26

1.7e-37

67.5

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRN GRNK  RGHV FIRC+NCG+CCPKDKAIK+F+VRNIVE AAVRD+ +A  Y QY LPKLY K+ YC++CAIHS VVR RSR  RR+R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRP
        F  +R    +PG PG  PRP
Subjt:  FIRRREDQPKPGQPGQAPRP

P49206 40S ribosomal protein S26-1

3.1e-55

84.25

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPA
        F RR+ED PKPGQPGQAPRP G G  A
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPA

P49216 40S ribosomal protein S26

1.9e-49

77.34

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKHGRGHVK+IRCSNC KCCPKDKAIKRF VRNIVEQAA+RDVQEACV+D Y LPKLYAK+ +CVSCAIH+H+VRVRSR +RR+R+PP+R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQP-GQAPRPVGAGNPA
        F RRRED+P+  +P G AP P GA  PA
Subjt:  FIRRREDQPKPGQP-GQAPRPVGAGNPA

Q8LPJ7 40S ribosomal protein S26-2

1.4e-55

83.72

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPARA
        F RR+ED PKPGQPGQAPRP G G  A A
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPARA

Q9LYK9 40S ribosomal protein S26-3

9.0e-55

85.04

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPA
        F RR+ED PKP QPGQAPRP G G PA
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPA

Arabidopsis top hits

e value

%identity

Alignment

AT2G40510.1 Ribosomal protein S26e family protein

9.8e-57

83.72

Show/hide

Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPARA
        F RR+ED PKPGQPGQAPRP G G  A A
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPARA

AT2G40590.1 Ribosomal protein S26e family protein

2.2e-56

84.25

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHV  IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPA
        F RR+ED PKPGQPGQAPRP G G  A
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPA

AT3G56340.1 Ribosomal protein S26e family protein

6.4e-56

85.04

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Query:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR
        MTFKRRNGGRNKH RGHVK IRCSNCGKCCPKDKAIKRF+VRNIVEQAA+RDVQEA VY+ YTLPKLYAK QYCVSCAIHSHVVRVRSRT+RR R PP R
Subjt:  MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQR

Query:  FIRRREDQPKPGQPGQAPRPVGAGNPA
        F RR+ED PKP QPGQAPRP G G PA
Subjt:  FIRRREDQPKPGQPGQAPRPVGAGNPA

Sequences

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CDS sequence

Show/hide CDS sequence

ATGACTTTCAAGCGCAGGAATGGCGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCCGGTGCTCCAACTGCGGCAAGTGTTGCCCTAAGGACAAGGCTATTAA
GCGATTTCTTGTGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATATACTCTCCCAAAGCTCTATGCTAAGATGCAGTACT
GTGTTTCCTGTGCTATTCACTCACATGTTGTGAGAGTTCGATCTCGCACTGATAGAAGGAATCGGCAACCACCACAGCGCTTCATCAGACGCAGGGAGGATCAGCCGAAA
CCGGGTCAGCCAGGCCAAGCCCCTCGACCTGTTGGAGCTGGAAATCCTGCTCGTGCGTAA

mRNA sequence

Show/hide mRNA sequence

GGCTAATGTAAAAATTGGTGTTTGAGTTACAAGGATGAGATTAGGAATTAAAAAAAAAAGATAAGAGCAAAATTTGGGATCGTTGGAGCGGAAGGTATATTTAAAGCGTT
TAGCGGTACAAAGCTCGAACTCAACGTTTGCTCACAAAACCCTAACCGGCTGCTTCTTCTTCTCTTTCTCTCATCTTCAAGATCCAAAGCTTTGAAACAATGACTTTCAA
GCGCAGGAATGGCGGACGTAACAAGCACGGCCGTGGACACGTTAAGTTCATCCGGTGCTCCAACTGCGGCAAGTGTTGCCCTAAGGACAAGGCTATTAAGCGATTTCTTG
TGAGGAATATTGTGGAGCAGGCTGCTGTTAGGGATGTCCAAGAAGCCTGTGTCTATGACCAATATACTCTCCCAAAGCTCTATGCTAAGATGCAGTACTGTGTTTCCTGT
GCTATTCACTCACATGTTGTGAGAGTTCGATCTCGCACTGATAGAAGGAATCGGCAACCACCACAGCGCTTCATCAGACGCAGGGAGGATCAGCCGAAACCGGGTCAGCC
AGGCCAAGCCCCTCGACCTGTTGGAGCTGGAAATCCTGCTCGTGCGTAAAGAAACCTTTTTATGGCTTCTACGAGCAATTCATAGGAATTTTTTTTTTAGGATCGATACG
GAAAGTTACCCCAATTTTGCAACTTTGTTGAGTTTGTTGATTTGACTGTTCTTCAATTTGTTTTCTTAATTCATGGTTTTTCATTTCTCGGAATCTATTTTGCCCCACCT
CCTTTAATCATATATCATTTTGGAAGAGCATAGAATTGTTACTTTTCATTGTTGGCTGCAGGGAATGTAGGTAGGGATGTGAGATTGAGATGTTATTTTGAGGACTTTTG
GAGGAAATGAGATTCAAATGAGATTGTG

Protein sequence

Show/hide protein sequence

MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDQYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRNRQPPQRFIRRREDQPK
PGQPGQAPRPVGAGNPARA

Sed0024790 (gene) of Chayote v1 genome