CuGenDBv2

Gene ID	Sed0024793
Organism	Sechium edule (Chayote v1)
Description	photosystem II repair protein PSB27-H1, chloroplastic-like
Genome location	LG05:32837347..32838361
RNA-Seq Expression	Sed0024793
Synteny	Sed0024793
Gene Ontology terms	GO:0010206 - photosystem II repair (biological process) GO:0010207 - photosystem II assembly (biological process) GO:0071484 - cellular response to light intensity (biological process) GO:0009523 - photosystem II (cellular component) GO:0009543 - chloroplast thylakoid lumen (cellular component)
InterPro domains	IPR025585 - Photosystem II Pbs27 IPR038450 - Photosystem II Pbs27 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6589210.1 Photosystem II repair protein PSB27-H1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]

9.4e-70

85.71

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Query:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR
        MAS TL+TPCTSKSQPLIIP KPKS IS  A    RRRE LSLTASVLAAPWVL PP PA+ S DEEYVKDTNEVI KVRTTI MDKNDPNV  AVAELR
Subjt:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR

Query:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022930794.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

8.5e-71

86.31

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Query:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR
        MAS TL+TPCTSKSQPLIIP KPKS IS  A   PRRRE LSLTASVLAAPWVL PP PA+ S DEEYVKDTNEVI+KVRTTI MDKNDPNV  AVAELR
Subjt:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR

Query:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022952622.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita moschata]

4.7e-69

84.88

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Query:  MASSTLITPCTSKSQPLIIPFKPKSGISITAAV-----PRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAV
        MAS TLITP TSKSQPLIIP KPKS IS  A        RRREFLSLTASVLA  WVLFPP PA  S DEEYVKDT EVI KVRTTI MDKNDPNV AAV
Subjt:  MASSTLITPCTSKSQPLIIPFKPKSGISITAAV-----PRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAV

Query:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_022988975.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita maxima]

8.5e-71

86.31

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Query:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR
        MAS  L+TPCTSKSQPLIIP KPKS IS  A   PRRRE LSLTASVLAAPWVL PP PA+ S DEEYVKDTNEVI+KVRTTI MDKNDPNV  AVAELR
Subjt:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR

Query:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

XP_023529218.1 photosystem II repair protein PSB27-H1, chloroplastic-like [Cucurbita pepo subsp. pepo]

2.9e-71

86.9

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Query:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR
        MAS TL+TPCTSKSQPLIIP KPKS IS  A   PRRRE LSLTASVLAAPWVL PP PA+ S DEEYVKDTNEVI KVRTTI MDKNDPNV  AVAELR
Subjt:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR

Query:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K1S2 Uncharacterized protein

1.0e-66

82.84

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Query:  MASSTLITPCTSKSQPLIIPFKPKSGISITAAVP--RRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAEL
        MAS TLITPCTSKSQ   IP KPKS IS     P  RRREFLSLTASVLA  +VLFP  PA  + D+EYVKDTNEVI KVRTTI MD+NDPNV AAVA+L
Subjt:  MASSTLITPCTSKSQPLIIPFKPKSGISITAAVP--RRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAEL

Query:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        RESSN WVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
Subjt:  RESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1ESI1 photosystem II repair protein PSB27-H1, chloroplastic-like

4.1e-71

86.31

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Query:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR
        MAS TL+TPCTSKSQPLIIP KPKS IS  A   PRRRE LSLTASVLAAPWVL PP PA+ S DEEYVKDTNEVI+KVRTTI MDKNDPNV  AVAELR
Subjt:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR

Query:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1GKW7 photosystem II repair protein PSB27-H1, chloroplastic-like

2.3e-69

84.88

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Query:  MASSTLITPCTSKSQPLIIPFKPKSGISITAAV-----PRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAV
        MAS TLITP TSKSQPLIIP KPKS IS  A        RRREFLSLTASVLA  WVLFPP PA  S DEEYVKDT EVI KVRTTI MDKNDPNV AAV
Subjt:  MASSTLITPCTSKSQPLIIPFKPKSGISITAAV-----PRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAV

Query:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1HZH1 photosystem II repair protein PSB27-H1, chloroplastic-like

2.3e-69

84.88

Show/hide

Query:  MASSTLITPCTSKSQPLIIPFKPKSGISITAAV-----PRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAV
        MAS TLITP TSKSQPLIIP KPKS IS  A        RRREFLSLTASVLA  WVLFPP PA  S DEEYVKDT EVI KVRTTI MDKNDPNV AAV
Subjt:  MASSTLITPCTSKSQPLIIPFKPKSGISITAAV-----PRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAV

Query:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        AELRESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEM TAEKALLRGR
Subjt:  AELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

A0A6J1JL33 photosystem II repair protein PSB27-H1, chloroplastic-like

4.1e-71

86.31

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Query:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR
        MAS  L+TPCTSKSQPLIIP KPKS IS  A   PRRRE LSLTASVLAAPWVL PP PA+ S DEEYVKDTNEVI+KVRTTI MDKNDPNV  AVAELR
Subjt:  MASSTLITPCTSKSQPLIIPFKPKSGISITAA-VPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELR

Query:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        ESSNSWVAKYRKEK+LLGRASFRDMYSALNAVSGHY+SFGPTAPIPAKRKARILEEMDTAEKAL RGR
Subjt:  ESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

SwissProt top hits

e value

%identity

Alignment

Q9LR64 Photosystem II repair protein PSB27-H1, chloroplastic

1.9e-49

63.01

Show/hide

Query:  ASSTLITPCTSKSQPLIIPFKPKSGISITAAVPR-----RREFLSL--TASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAA
        A++TL+ P     +P II     S +S     PR     RR+FLSL  T+++L        P P   +EDEEY+KDT+ VI+KVR+T++M K DPNV  A
Subjt:  ASSTLITPCTSKSQPLIIPFKPKSGISITAAVPR-----RREFLSL--TASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAA

Query:  VAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        VAELRE+SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  VAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Q9ZVZ9 Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic

7.6e-06

26.23

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Query:  VLAAPWVLFPPGPARGSEDE---EYVKDTNEVITKVRTTINMD-KNDPNVGAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT
        V+ A   LF P     S  E    Y+K   EV+  +R ++  + K++     +    +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+
Subjt:  VLAAPWVLFPPGPARGSEDE---EYVKDTNEVITKVRTTINMD-KNDPNVGAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT

Query:  APIPAKRKARILEEMDTAEKAL
        AP+P + K  IL++++ AE+ L
Subjt:  APIPAKRKARILEEMDTAEKAL

Arabidopsis top hits

e value

%identity

Alignment

AT1G03600.1 photosystem II family protein

1.4e-50

63.01

Show/hide

Query:  ASSTLITPCTSKSQPLIIPFKPKSGISITAAVPR-----RREFLSL--TASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAA
        A++TL+ P     +P II     S +S     PR     RR+FLSL  T+++L        P P   +EDEEY+KDT+ VI+KVR+T++M K DPNV  A
Subjt:  ASSTLITPCTSKSQPLIIPFKPKSGISITAAVPR-----RREFLSL--TASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAA

Query:  VAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR
        VAELRE+SNSWVAKYRKEKALLG+ASFRD+YSALNAVSGHY+SFGPTAPIPAKRKARILEEM+TAEKAL RGR
Subjt:  VAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

AT1G05385.1 photosystem II 11 kDa protein-related

5.4e-07

26.23

Show/hide

Query:  VLAAPWVLFPPGPARGSEDE---EYVKDTNEVITKVRTTINMD-KNDPNVGAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT
        V+ A   LF P     S  E    Y+K   EV+  +R ++  + K++     +    +ES   +++ +R +K + G  S+ ++ + + A++  Y   GP+
Subjt:  VLAAPWVLFPPGPARGSEDE---EYVKDTNEVITKVRTTINMD-KNDPNVGAAVAELRESSNSWVAKYRKEKALLGRASFRDMYSALNAVSGHYISFGPT

Query:  APIPAKRKARILEEMDTAEKAL
        AP+P + K  IL++++ AE+ L
Subjt:  APIPAKRKARILEEMDTAEKAL

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCTCATCAACACTCATAACTCCCTGCACTTCCAAATCTCAGCCCCTCATCATCCCCTTCAAACCCAAGTCAGGCATTTCTATCACCGCCGCCGTTCCTCGCCGGCG
TGAATTCTTGTCCTTGACTGCCTCGGTTTTGGCGGCACCGTGGGTGCTGTTTCCTCCGGGGCCCGCACGTGGCTCGGAGGACGAGGAGTACGTGAAGGACACGAATGAGG
TGATAACCAAGGTCCGAACCACAATCAACATGGACAAAAATGACCCGAATGTGGGGGCAGCAGTGGCGGAGCTTCGAGAGAGTTCAAACTCATGGGTGGCAAAGTATAGG
AAGGAAAAGGCTCTATTGGGACGAGCTTCGTTCAGGGATATGTATTCGGCTTTAAATGCGGTTTCGGGTCATTACATTAGCTTCGGGCCGACGGCGCCGATCCCGGCAAA
GAGGAAGGCTAGGATTTTGGAGGAGATGGACACGGCAGAGAAGGCTCTGTTAAGAGGGAGATGA

mRNA sequence

Show/hide mRNA sequence

CACAAAGTCATGGCCTCATCAACACTCATAACTCCCTGCACTTCCAAATCTCAGCCCCTCATCATCCCCTTCAAACCCAAGTCAGGCATTTCTATCACCGCCGCCGTTCC
TCGCCGGCGTGAATTCTTGTCCTTGACTGCCTCGGTTTTGGCGGCACCGTGGGTGCTGTTTCCTCCGGGGCCCGCACGTGGCTCGGAGGACGAGGAGTACGTGAAGGACA
CGAATGAGGTGATAACCAAGGTCCGAACCACAATCAACATGGACAAAAATGACCCGAATGTGGGGGCAGCAGTGGCGGAGCTTCGAGAGAGTTCAAACTCATGGGTGGCA
AAGTATAGGAAGGAAAAGGCTCTATTGGGACGAGCTTCGTTCAGGGATATGTATTCGGCTTTAAATGCGGTTTCGGGTCATTACATTAGCTTCGGGCCGACGGCGCCGAT
CCCGGCAAAGAGGAAGGCTAGGATTTTGGAGGAGATGGACACGGCAGAGAAGGCTCTGTTAAGAGGGAGATGAAATTTTATGGGAACGTTTTTTTGTTTTCTTTTAATTA
TATATAGCTTGATTAAGTACATTATTATTTTTTCTAATTTTGATGTTTCATGTTTATGGGTTATGTAAGTATAGGATATGGAGGTTCACTACTTGTGAATTTACCAGACG
AGAAGATTCTAAAATTGAGATGATTAGACTCTCTCGTAATCTTTTTCTTTCATATTTTATTTTTATATAGCTCTAACGCCATTCATGATGAGTTTTAATTTAGTTGTAAG
ACTCAAAAACAAATGATGACCCAGCCACTTTGTAGTTAGCCATTTTTCATTATTCAAGGTTTGAGATAAAAGTATGTTGAATCTATGTCTAATGATTATTAGAGATAGAT
CGAGTGGGACAGTGACACAATTCATTATTTAATTCATTTTCACTCCACAATACATTTTTAGAATGTAGCCTGTTGATCGTTTAAGTTTATGTAGGAACGTTTGTTTTGTT
AGAAAATTGAATGGTTTTGCTTTTG

Protein sequence

Show/hide protein sequence

MASSTLITPCTSKSQPLIIPFKPKSGISITAAVPRRREFLSLTASVLAAPWVLFPPGPARGSEDEEYVKDTNEVITKVRTTINMDKNDPNVGAAVAELRESSNSWVAKYR
KEKALLGRASFRDMYSALNAVSGHYISFGPTAPIPAKRKARILEEMDTAEKALLRGR

Sed0024793 (gene) of Chayote v1 genome