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Sed0024797 (gene) of Chayote v1 genome

Gene IDSed0024797
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Genome locationLG14:18962446..18962876
RNA-Seq ExpressionSed0024797
SyntenySed0024797
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_016900937.1 PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]1.5e-1137.31Show/hide
Query:  TTEHSSTETQNPIESQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFL----------
        T   + ++ +NPI  Q S T  +P   + T  ++   P    +LNQ T+IKLDR N+LLW+ + LPIL+SYKL  HL G+  C    I L          
Subjt:  TTEHSSTETQNPIESQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFL----------

Query:  ----PSSEDEPAGTTM--VNPEYELWEQADQLLV
            PS E   + T +  VNP+YE W   D LL+
Subjt:  ----PSSEDEPAGTTM--VNPEYELWEQADQLLV

XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]8.5e-1248.28Show/hide
Query:  PAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTT------MVNPEYELWEQADQLLV
        P    LLNQ TSIK+DR NFLLWQN+ LPILRSYKL  +LTG   CP   +    +     G+T       +NP YE W   D+LL+
Subjt:  PAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTT------MVNPEYELWEQADQLLV

XP_030486823.1 uncharacterized protein LOC115703730 [Cannabis sativa]2.5e-1139.29Show/hide
Query:  TETQNPIESQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTTMVNPE
        T+T + + +Q S T            S+V  P F S LNQ  ++KLDRNNF LW+ +V  I++ ++L+G+LTGK   P+  I  P+ + +P     +NPE
Subjt:  TETQNPIESQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTTMVNPE

Query:  YELWEQADQLLV
        YE W   DQLL+
Subjt:  YELWEQADQLLV

XP_030493875.1 uncharacterized protein LOC115709798 isoform X2 [Cannabis sativa]4.2e-1149.38Show/hide
Query:  PAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTTMVNPEYELWEQADQLLV
        P F S LNQ  ++KLDRNN+ LW+N+V  I+R ++L+G+L G  T P   I  PS + +P  T  VNPEYEL    DQLL+
Subjt:  PAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTTMVNPEYELWEQADQLLV

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]6.5e-1245.26Show/hide
Query:  SKTGCSTV--GQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTT--MVNPEYELWEQADQLLV
        S  G ST     P    +LNQ  S+KLDR N+LLWQ + LPIL+SYKL+GHLT ++ CP   I  P+       TT   VNP+++ W   D LL+
Subjt:  SKTGCSTV--GQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTT--MVNPEYELWEQADQLLV

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911167.1e-1237.31Show/hide
Query:  TTEHSSTETQNPIESQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFL----------
        T   + ++ +NPI  Q S T  +P   + T  ++   P    +LNQ T+IKLDR N+LLW+ + LPIL+SYKL  HL G+  C    I L          
Subjt:  TTEHSSTETQNPIESQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFL----------

Query:  ----PSSEDEPAGTTM--VNPEYELWEQADQLLV
            PS E   + T +  VNP+YE W   D LL+
Subjt:  ----PSSEDEPAGTTM--VNPEYELWEQADQLLV

A0A6J1DCW4 uncharacterized protein LOC1110195984.1e-1248.28Show/hide
Query:  PAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTT------MVNPEYELWEQADQLLV
        P    LLNQ TSIK+DR NFLLWQN+ LPILRSYKL  +LTG   CP   +    +     G+T       +NP YE W   D+LL+
Subjt:  PAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTT------MVNPEYELWEQADQLLV

A0A803NZX3 Uncharacterized protein1.2e-1139.29Show/hide
Query:  TETQNPIESQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTTMVNPE
        T+T + + +Q S T            S+V  P F S LNQ  ++KLDRNNF LW+ +V  I++ ++L+G+LTGK   P+  I  P+ + +P     +NPE
Subjt:  TETQNPIESQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTTMVNPE

Query:  YELWEQADQLLV
        YE W   DQLL+
Subjt:  YELWEQADQLLV

A0A803PAZ1 Uncharacterized protein1.6e-1140Show/hide
Query:  SQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLP-SSEDEPAGTTMVNPEYELWEQA
        S P  T G+  Q    G       +F + L Q  SIKLDRNN+ LW+N+V  I+R ++LEG++ G   CP   +  P + E+ P     +NPEYE W   
Subjt:  SQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLP-SSEDEPAGTTMVNPEYELWEQA

Query:  DQLLV
        DQLL+
Subjt:  DQLLV

A0A803QD97 Uncharacterized protein9.2e-1241.94Show/hide
Query:  QQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTTMVNPEYELWEQADQLLV
        +++ +  S V  P F S LNQ  ++KLDRNNF LW+ +V  I R ++L+G+LTG  T P+  +  P +E +P     +NPE+E W   DQLL+
Subjt:  QQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTTMVNPEYELWEQADQLLV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTAACACCACTGAACATTCTTCGACTGAAACCCAAAATCCAATCGAGTCGCAGCCCTCAAGAACAACCGGATCTCCTCACCAACAATCCAAAACTGGATGTTCTAC
TGTCGGACAGCCTGCCTTCGTCAGCCTTCTGAATCAGGCAACCTCTATCAAGTTGGACCGAAACAACTTCCTTCTCTGGCAGAATATTGTGCTTCCTATCCTGAGGAGCT
ACAAACTCGAAGGTCATCTTACAGGTAAAGATACATGTCCTGAAATGAGCATTTTTCTTCCCTCTTCAGAAGATGAACCTGCAGGCACCACCATGGTCAATCCCGAGTAT
GAACTTTGGGAACAAGCTGACCAACTCCTTGTGGACTAG
mRNA sequenceShow/hide mRNA sequence
ATTTTTTCTCTCTGTTCTCTTCTCTCAATCTCCTGTTACTTCAAGTTGGTATCAGAGCCCACATGGCTAACACCACTGAACATTCTTCGACTGAAACCCAAAATCCAATC
GAGTCGCAGCCCTCAAGAACAACCGGATCTCCTCACCAACAATCCAAAACTGGATGTTCTACTGTCGGACAGCCTGCCTTCGTCAGCCTTCTGAATCAGGCAACCTCTAT
CAAGTTGGACCGAAACAACTTCCTTCTCTGGCAGAATATTGTGCTTCCTATCCTGAGGAGCTACAAACTCGAAGGTCATCTTACAGGTAAAGATACATGTCCTGAAATGA
GCATTTTTCTTCCCTCTTCAGAAGATGAACCTGCAGGCACCACCATGGTCAATCCCGAGTATGAACTTTGGGAACAAGCTGACCAACTCCTTGTGGACTAG
Protein sequenceShow/hide protein sequence
MANTTEHSSTETQNPIESQPSRTTGSPHQQSKTGCSTVGQPAFVSLLNQATSIKLDRNNFLLWQNIVLPILRSYKLEGHLTGKDTCPEMSIFLPSSEDEPAGTTMVNPEY
ELWEQADQLLVD