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Sed0024805 (gene) of Chayote v1 genome

Gene IDSed0024805
OrganismSechium edule (Chayote v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Genome locationLG07:341040..343141
RNA-Seq ExpressionSed0024805
SyntenySed0024805
Gene Ontology termsGO:0006284 - base-excision repair (biological process)
GO:0090305 - nucleic acid phosphodiester bond hydrolysis (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity (molecular function)
GO:0004519 - endonuclease activity (molecular function)
GO:0008081 - phosphoric diester hydrolase activity (molecular function)
GO:0008311 - double-stranded DNA 3'-5' exodeoxyribonuclease activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2635279.1 hypothetical protein D8674_025813 [Pyrus ussuriensis x Pyrus communis]1.2e-0556Show/hide
Query:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
        M IISWNVRGLGS +KR+++K+  ++L P I+ILQETKK S+N+  + S+
Subjt:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
ONH99726.1 hypothetical protein PRUPE_6G046000 [Prunus persica]4.1e-0662Show/hide
Query:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
        M IISWN+RGLGS RKR+V+KE L  L P IVILQETKKQ++++  + S+
Subjt:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
RVW16209.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.6e-0554.9Show/hide
Query:  PMIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
        PM IISWNVRGLGS  KR +IK+ L+  NP +V++QETKK++ ++ F+ S+
Subjt:  PMIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
RVW91468.1 Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]1.6e-0554.9Show/hide
Query:  PMIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
        PM IISWNVRGLGS  KR +IK+ L+  NP +V++QETKK++ ++ F+ S+
Subjt:  PMIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
XP_021820446.1 uncharacterized protein LOC110762145 [Prunus avium]2.4e-0662Show/hide
Query:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
        M IISWN+RGLGS RKR+V+KE L +L P IVILQETKKQ +++  + S+
Subjt:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
TrEMBL top hitse value%identityAlignment
A0A251NK70 Uncharacterized protein2.0e-0662Show/hide
Query:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
        M IISWN+RGLGS RKR+V+KE L  L P IVILQETKKQ++++  + S+
Subjt:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
A0A438BYX6 Transposon TX1 uncharacterized 149 kDa protein7.5e-0654.9Show/hide
Query:  PMIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
        PM IISWNVRGLGS  KR +IK+ L+  NP +V++QETKK++ ++ F+ S+
Subjt:  PMIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
A0A438FW30 Transposon TX1 uncharacterized 149 kDa protein7.5e-0654.9Show/hide
Query:  PMIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
        PM IISWNVRGLGS  KR +IK+ L+  NP +V++QETKK++ ++ F+ S+
Subjt:  PMIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
A0A5N5I699 Uncharacterized protein5.8e-0656Show/hide
Query:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
        M IISWNVRGLGS +KR+++K+  ++L P I+ILQETKK S+N+  + S+
Subjt:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
A0A6P5T1U8 uncharacterized protein LOC1107621451.2e-0662Show/hide
Query:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
        M IISWN+RGLGS RKR+V+KE L +L P IVILQETKKQ +++  + S+
Subjt:  MIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCATCAGGATTGAACCTTTGATAGTATCAGAAATCAATTTTGATCGGACTGCTATTCTTTACGATGAAACTTTGAAGATTTTTGGATCTGAAGCACCATCACGTGT
TGGTGAACCATTGACATCTGTTCTTGAAAACTCCACACGCACCGATGACCTTTTAAAGAAGCCTACTATTCTAGTCGCCCTAGGCGCTGCTGAAAACAGCCTGAAGAAGC
CATCCTTAGTCGCACACGCACCAAAGAGAGAGTGGGTCATAGTTAGAAGGAAAAAGACATCATCCTCTTACCCTTACCATCAAAGGTTTGTCATTTCATCCTCCATGTCG
AAAGTTCCAGGCGCTATGTCTCTTCCCCAAACCCAACTGAACCAGTTGATTGATGACCACCCATTTACCAACCAGCTCACAAGTTCGGTTCCTGTAGAACCAGACAATCC
AAATGGGCCATTAACCATTATCTCTCAGCCAATTAAAAAGTCATATTTGTCTGCTTTATCCAAAAAGCAAAACCCCATAAATGCCCTTAGCCAACCCCCCGATAAAACCA
TCATTATCAATGGAAAACCAACTTTGTTTTTACCATGCACCAAATACTCGACCAACACTCCTCACCCCACTTCTGACACAGATGGAGGCTGCTCCTCACCTGGTTCCACA
CCGATGATCATAATCTCGTGGAATGTCAGAGGCTTGGGTTCATGGAGGAAACGAGTTGTCATTAAAGAATTGTTGAAGCAACTCAACCCAGCTATTGTTATTCTTCAGGA
AACCAAGAAGCAATCGATGAATAAAAGTTTTATTAAGTCCATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCATCAGGATTGAACCTTTGATAGTATCAGAAATCAATTTTGATCGGACTGCTATTCTTTACGATGAAACTTTGAAGATTTTTGGATCTGAAGCACCATCACGTGT
TGGTGAACCATTGACATCTGTTCTTGAAAACTCCACACGCACCGATGACCTTTTAAAGAAGCCTACTATTCTAGTCGCCCTAGGCGCTGCTGAAAACAGCCTGAAGAAGC
CATCCTTAGTCGCACACGCACCAAAGAGAGAGTGGGTCATAGTTAGAAGGAAAAAGACATCATCCTCTTACCCTTACCATCAAAGGTTTGTCATTTCATCCTCCATGTCG
AAAGTTCCAGGCGCTATGTCTCTTCCCCAAACCCAACTGAACCAGTTGATTGATGACCACCCATTTACCAACCAGCTCACAAGTTCGGTTCCTGTAGAACCAGACAATCC
AAATGGGCCATTAACCATTATCTCTCAGCCAATTAAAAAGTCATATTTGTCTGCTTTATCCAAAAAGCAAAACCCCATAAATGCCCTTAGCCAACCCCCCGATAAAACCA
TCATTATCAATGGAAAACCAACTTTGTTTTTACCATGCACCAAATACTCGACCAACACTCCTCACCCCACTTCTGACACAGATGGAGGCTGCTCCTCACCTGGTTCCACA
CCGATGATCATAATCTCGTGGAATGTCAGAGGCTTGGGTTCATGGAGGAAACGAGTTGTCATTAAAGAATTGTTGAAGCAACTCAACCCAGCTATTGTTATTCTTCAGGA
AACCAAGAAGCAATCGATGAATAAAAGTTTTATTAAGTCCATCTGA
Protein sequenceShow/hide protein sequence
MSIRIEPLIVSEINFDRTAILYDETLKIFGSEAPSRVGEPLTSVLENSTRTDDLLKKPTILVALGAAENSLKKPSLVAHAPKREWVIVRRKKTSSSYPYHQRFVISSSMS
KVPGAMSLPQTQLNQLIDDHPFTNQLTSSVPVEPDNPNGPLTIISQPIKKSYLSALSKKQNPINALSQPPDKTIIINGKPTLFLPCTKYSTNTPHPTSDTDGGCSSPGST
PMIIISWNVRGLGSWRKRVVIKELLKQLNPAIVILQETKKQSMNKSFIKSI