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Sed0024816 (gene) of Chayote v1 genome

Gene IDSed0024816
OrganismSechium edule (Chayote v1)
DescriptionCalcium-binding EF-hand family protein
Genome locationLG03:5473152..5473403
RNA-Seq ExpressionSed0024816
SyntenySed0024816
Gene Ontology termsGO:0005509 - calcium ion binding (molecular function)
InterPro domainsIPR002048 - EF-hand domain
IPR011992 - EF-hand domain pair
IPR018247 - EF-Hand 1, calcium-binding site


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8648431.1 hypothetical protein Csa_008561 [Cucumis sativus]1.3e-3297.44Show/hide
Query:  DQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        DQAER+RIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFA ANRGLVKDVAKIF
Subjt:  DQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

XP_004140303.1 polcalcin Ole e 3 [Cucumis sativus]1.2e-3395.24Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D QDQAER+RIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFA ANRGLVKDVAKIF
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

XP_016902555.1 PREDICTED: polcalcin Ole e 3 [Cucumis melo]2.7e-3394.05Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D QDQAER+RIFKRFDANGDGKISS+ELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFA ANRGLVKDVAKIF
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

XP_022141635.1 polcalcin Bet v 4 [Momordica charantia]7.8e-3392.86Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D QD+ ERDRIFKRFDANGDGKIS+AELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFA ANRGLVKDVAKIF
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

XP_038875780.1 polcalcin Ole e 3 [Benincasa hispida]6.0e-3392.86Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D QDQAER+RIFKRFDANGDGKIS++ELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFA ANRGLVKDVAKIF
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

TrEMBL top hitse value%identityAlignment
A0A0A0KQB8 Uncharacterized protein5.8e-3495.24Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D QDQAER+RIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFA ANRGLVKDVAKIF
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

A0A1S4E3J8 polcalcin Ole e 31.3e-3394.05Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D QDQAER+RIFKRFDANGDGKISS+ELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFA ANRGLVKDVAKIF
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

A0A5A7V407 Polcalcin Ole e 31.3e-3394.05Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D QDQAER+RIFKRFDANGDGKISS+ELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFA ANRGLVKDVAKIF
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

A0A6J1CIN1 polcalcin Bet v 43.8e-3392.86Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D QD+ ERDRIFKRFDANGDGKIS+AELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFA ANRGLVKDVAKIF
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

A0A7N0TTI6 Uncharacterized protein1.2e-3188.1Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D QDQAER+RIFKRFDANGDGKISS+ELGEALK+LGSVTADEVQRMM EIDTDGDGFISY+EFT+FA ANRGLVKDVAK+F
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

SwissProt top hitse value%identityAlignment
O81092 Polcalcin Ole e 33.4e-3183.33Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D Q+ AE +RIFKRFDANGDGKISS+ELGE LKTLGSVT +E+QRMMAEIDTDGDGFIS+EEFT FA ANRGLVKDVAKIF
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

Q39419 Polcalcin Bet v 43.1e-3282.35Show/hide
Query:  MAED--QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+D  QD+AER+RIFKRFDANGDGKIS+AELGEALKTLGS+T DEV+ MMAEIDTDGDGFIS++EFTDF  ANRGL+KDVAKIF
Subjt:  MAED--QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

Q84V36 Polcalcin Che a 32.0e-3183.33Show/hide
Query:  AED--QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        AED  QD A+R+RIFKRFD NGDGKISS+ELG+ALKTLGSVT DEV+RMMAEIDTDGDGFIS++EFTDFA ANRGLVKDV+KIF
Subjt:  AED--QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

Q8VWY6 Polcalcin Nic t 17.6e-3180.95Show/hide
Query:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MAED QD A+R+RIFKRFD NGDGKISSAELGE LK LGSVT++EVQ MMAE+DTDGDGFISYEEF +FA ANRGL+KDVAK+F
Subjt:  MAED-QDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

Q9LF54 Probable calcium-binding protein CML294.4e-3181.93Show/hide
Query:  MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+  ++AE DRIFK+FDANGDGKIS+AEL EALKTLGSVTAD+V+RMMAEIDTDGDG ISY+EFTDFA ANRGL+KDVAKIF
Subjt:  MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

Arabidopsis top hitse value%identityAlignment
AT1G18210.1 Calcium-binding EF-hand family protein7.6e-1049.15Show/hide
Query:  ERDRIFKRFDANGDGKISSAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFT
        E  ++F +FD+NGDGKIS  ELG   K +G S T  E+ R++ E+DTD DG+I+ +EF+
Subjt:  ERDRIFKRFDANGDGKISSAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFT

AT1G24620.1 EF hand calcium-binding protein family6.8e-1150Show/hide
Query:  ERDRIFKRFDANGDGKISSAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTD
        E + +FK+FD NGDGKISS ELG  + +LG  V  +E+++ + EID  GDG+I++EEF +
Subjt:  ERDRIFKRFDANGDGKISSAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTD

AT1G73630.1 EF hand calcium-binding protein family2.4e-1147.14Show/hide
Query:  ERDRIFKRFDANGDGKISSAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVK
        E  ++F +FDANGDGKIS +ELG   K++G S T +E+ R++ EID D DGFI+ EEF     ++   V+
Subjt:  ERDRIFKRFDANGDGKISSAELGEALKTLG-SVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVK

AT3G03430.1 Calcium-binding EF-hand family protein3.5e-3175.9Show/hide
Query:  MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+  ++AE DRIFK+FDANGDGKIS+AELG+ALK LGSVT ++++RMMAEIDTDGDG+ISY+EF DFA ANRGL+KDVAKIF
Subjt:  MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF

AT5G17480.1 pollen calcium-binding protein 13.2e-3281.93Show/hide
Query:  MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF
        MA+  ++AE DRIFK+FDANGDGKIS+AEL EALKTLGSVTAD+V+RMMAEIDTDGDG ISY+EFTDFA ANRGL+KDVAKIF
Subjt:  MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGAGGATCAAGACCAAGCTGAGCGAGATCGTATTTTCAAGCGCTTCGACGCCAATGGCGATGGTAAGATCTCTTCAGCCGAACTCGGGGAAGCCTTGAAGACACT
CGGCTCTGTCACTGCCGACGAAGTTCAGCGGATGATGGCCGAGATCGATACCGATGGCGACGGGTTCATTTCTTACGAAGAGTTCACAGATTTCGCATGTGCCAACCGTG
GATTAGTCAAGGATGTTGCAAAGATATTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGAGGATCAAGACCAAGCTGAGCGAGATCGTATTTTCAAGCGCTTCGACGCCAATGGCGATGGTAAGATCTCTTCAGCCGAACTCGGGGAAGCCTTGAAGACACT
CGGCTCTGTCACTGCCGACGAAGTTCAGCGGATGATGGCCGAGATCGATACCGATGGCGACGGGTTCATTTCTTACGAAGAGTTCACAGATTTCGCATGTGCCAACCGTG
GATTAGTCAAGGATGTTGCAAAGATATTTTAA
Protein sequenceShow/hide protein sequence
MAEDQDQAERDRIFKRFDANGDGKISSAELGEALKTLGSVTADEVQRMMAEIDTDGDGFISYEEFTDFACANRGLVKDVAKIF