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Sed0024822 (gene) of Chayote v1 genome

Gene IDSed0024822
OrganismSechium edule (Chayote v1)
DescriptionRibosomal_L2_C domain-containing protein
Genome locationLG13:18734184..18735116
RNA-Seq ExpressionSed0024822
SyntenySed0024822
Gene Ontology termsGO:0009507 - chloroplast (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
EXB56973.1 hypothetical protein L484_000755 [Morus notabilis]3.0e-0994.44Show/hide
Query:  EPNLLHVKPALFRSGKSCGFMKPCAMARIRSQSYLR
        EPNLLHVKPALFRSGKS GFMKPCAMARIRSQSY R
Subjt:  EPNLLHVKPALFRSGKSCGFMKPCAMARIRSQSYLR

KAB5511226.1 hypothetical protein DKX38_030151 [Salix brachista]2.3e-0989.19Show/hide
Query:  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRCSFSG
        WTLMSIRMNHPFHGGKSLPARQEDSKLQILSR +  G
Subjt:  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRCSFSG

KAB5511300.1 hypothetical protein DKX38_030095 [Salix brachista]5.6e-0860.61Show/hide
Query:  IRMNHPFHGGKSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVTPVPSEMIEHAEPNL
        I+MNHPFHGGKSLPARQEDSKLQILSR   S SR G     NS +E   DV  V S  +   +PNL
Subjt:  IRMNHPFHGGKSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVTPVPSEMIEHAEPNL

PPS07120.1 hypothetical protein GOBAR_AA13525 [Gossypium barbadense]5.4e-1945.27Show/hide
Query:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKVY------------------------RKDSSFLFYYWTL--------MSIRMNHPFHGG
        M LCTLRIGIHFLKD GFRALGYLYDPI CVK A+ TEPGK Y                        R+ +SF +  W L        M IRMNH FHG 
Subjt:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKVY------------------------RKDSSFLFYYWTL--------MSIRMNHPFHGG

Query:  KSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVTPVPSEM
         +L    +  K +ILS+  F G +   K  +      +RDVTPV SEM
Subjt:  KSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVTPVPSEM

TYH13762.1 hypothetical protein ES288_A06G165300v1 [Gossypium darwinii]2.1e-0754.69Show/hide
Query:  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVTPVPSEMI
        W  M IRMNH FHGGKSLPARQEDSK    +   F G +   K  +      +RDVTPVPSEM+
Subjt:  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVTPVPSEMI

TrEMBL top hitse value%identityAlignment
A0A0A0L231 Uncharacterized protein6.2e-6179.5Show/hide
Query:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGK-------VYRKDSSFLFYYWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR--CSFSGS
        MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGK       +  K  S    +WTLMSIRMNHPFHGGKSLPARQEDSKLQILSR    FSGS
Subjt:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGK-------VYRKDSSFLFYYWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR--CSFSGS

Query:  RRGVKTHKNSGMEMERDVTPVPSEMIEHAEPNLLHVKPALFRSGKSCGFMKPCAMARIRSQ
        RRGV+THKNSGMEME+      S   EHAEPNLLHVKPALFRSGKS GFMKPCAMARIRSQ
Subjt:  RRGVKTHKNSGMEMERDVTPVPSEMIEHAEPNLLHVKPALFRSGKSCGFMKPCAMARIRSQ

A0A2P5XUU9 Uncharacterized protein ycf682.6e-1945.27Show/hide
Query:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKVY------------------------RKDSSFLFYYWTL--------MSIRMNHPFHGG
        M LCTLRIGIHFLKD GFRALGYLYDPI CVK A+ TEPGK Y                        R+ +SF +  W L        M IRMNH FHG 
Subjt:  MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKVY------------------------RKDSSFLFYYWTL--------MSIRMNHPFHGG

Query:  KSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVTPVPSEM
         +L    +  K +ILS+  F G +   K  +      +RDVTPV SEM
Subjt:  KSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVTPVPSEM

A0A5N5IXQ9 Uncharacterized protein ycf681.1e-0989.19Show/hide
Query:  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRCSFSG
        WTLMSIRMNHPFHGGKSLPARQEDSKLQILSR +  G
Subjt:  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRCSFSG

A0A5N5IZ51 Uncharacterized protein2.7e-0860.61Show/hide
Query:  IRMNHPFHGGKSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVTPVPSEMIEHAEPNL
        I+MNHPFHGGKSLPARQEDSKLQILSR   S SR G     NS +E   DV  V S  +   +PNL
Subjt:  IRMNHPFHGGKSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVTPVPSEMIEHAEPNL

W9R592 Uncharacterized protein1.4e-0994.44Show/hide
Query:  EPNLLHVKPALFRSGKSCGFMKPCAMARIRSQSYLR
        EPNLLHVKPALFRSGKS GFMKPCAMARIRSQSY R
Subjt:  EPNLLHVKPALFRSGKSCGFMKPCAMARIRSQSYLR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAAC
GGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTATTCTATTATTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTA
GGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGTTGTTCATTTTCAGGGTCTCGAAGGGGCGTGAAAACACATAAAAACTCTGGAATGGAAATGGAAAGAGATGTAACT
CCAGTTCCTTCGGAAATGATAGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCAGGAAAATCGTGCGGTTTTATGAAACCGTGTGCTATGGC
TCGAATCCGTAGTCAATCCTATTTACGATAG
mRNA sequenceShow/hide mRNA sequence
ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAAC
GGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTATTCTATTATTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTA
GGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGTTGTTCATTTTCAGGGTCTCGAAGGGGCGTGAAAACACATAAAAACTCTGGAATGGAAATGGAAAGAGATGTAACT
CCAGTTCCTTCGGAAATGATAGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCAGGAAAATCGTGCGGTTTTATGAAACCGTGTGCTATGGC
TCGAATCCGTAGTCAATCCTATTTACGATAG
Protein sequenceShow/hide protein sequence
MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKVYRKDSSFLFYYWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRCSFSGSRRGVKTHKNSGMEMERDVT
PVPSEMIEHAEPNLLHVKPALFRSGKSCGFMKPCAMARIRSQSYLR