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Sed0024949 (gene) of Chayote v1 genome

Gene IDSed0024949
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG06:11554215..11558340
RNA-Seq ExpressionSed0024949
SyntenySed0024949
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5443010.1 hypothetical protein F2P56_035607 [Juglans regia]9.9e-1032.41Show/hide
Query:  KIKGDKWKRK---ARAKASLSDMD------------QRIEDDQIRDSMIC-EEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKAS
        +I GDKW  K   +  K+ +S +D            ++  + ++ + + C EEAD I +IPL +S+  D++IW  +S G F+VKSAYHL   L    K  
Subjt:  KIKGDKWKRK---ARAKASLSDMD------------QRIEDDQIRDSMIC-EEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKAS

Query:  PSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN-LFHQKRTFKRR
        PS++  + ++WK+ W++++ P  K+   +   N L  Q   FKR+
Subjt:  PSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN-LFHQKRTFKRR

KAG8387873.1 hypothetical protein BUALT_Bualt02G0066800 [Buddleja alternifolia]4.2e-0839.78Show/hide
Query:  DDQIRDSMIC-EEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN
        D  + D + C E+A  I  IPLGS+   D +IW+ SS+G F+V+SAYHLA ++     AS SN    +  W+  WK  + P I++ A K  K+
Subjt:  DDQIRDSMIC-EEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN

XP_018805736.2 uncharacterized protein LOC108979499 [Juglans regia]4.9e-0933.1Show/hide
Query:  KIKGDKWKRK---ARAKASLSDMD------------QRIEDDQIRDSMIC-EEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKAS
        +I GDKW  K   +  K+ +S +D            ++  + ++ + + C EEAD IV+IPL +S   D++IW  +S G F+VKSAYHL   L    K  
Subjt:  KIKGDKWKRK---ARAKASLSDMD------------QRIEDDQIRDSMIC-EEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKAS

Query:  PSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN-LFHQKRTFKRR
        PS++    ++WK+ W++++ P  K+   +   N L  Q   FKR+
Subjt:  PSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN-LFHQKRTFKRR

XP_030922958.1 uncharacterized protein LOC115949824 [Quercus lobata]1.1e-0840Show/hide
Query:  ASLSDMDQR-IEDDQIRDSMICEEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNL-SNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQ
        +SL D D +  + + +R   +  EAD I+KIPL   L ED +IW  +  GVF+VKSAYH+A  L S+ D    S+    + IWK  WK+++ P IK+ A 
Subjt:  ASLSDMDQR-IEDDQIRDSMICEEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNL-SNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQ

Query:  KVLKN
        +   N
Subjt:  KVLKN

XP_040996249.1 uncharacterized protein LOC121242444 [Juglans microcarpa x Juglans regia]2.4e-0829.55Show/hide
Query:  PINKIKGDKWKRKARAKASLSDMDQRIEDDQIRDSMICEEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKS
        PI+++ G+     A+ +  L   ++R   + +      E+AD I +IP+ SS   D++IW  +S+G F+VKSAYH+   ++   K  PS++    ++WK+
Subjt:  PINKIKGDKWKRKARAKASLSDMDQRIEDDQIRDSMICEEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKS

Query:  FWKVEIAPMIKMGAQKVLKN-LFHQKRTFKRR
         W+++++P  K+   +   N L  Q   FK++
Subjt:  FWKVEIAPMIKMGAQKVLKN-LFHQKRTFKRR

TrEMBL top hitse value%identityAlignment
A0A2I4DF11 uncharacterized protein LOC1089794992.4e-0933.1Show/hide
Query:  KIKGDKWKRK---ARAKASLSDMD------------QRIEDDQIRDSMIC-EEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKAS
        +I GDKW  K   +  K+ +S +D            ++  + ++ + + C EEAD IV+IPL +S   D++IW  +S G F+VKSAYHL   L    K  
Subjt:  KIKGDKWKRK---ARAKASLSDMD------------QRIEDDQIRDSMIC-EEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKAS

Query:  PSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN-LFHQKRTFKRR
        PS++    ++WK+ W++++ P  K+   +   N L  Q   FKR+
Subjt:  PSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKN-LFHQKRTFKRR

A0A2N9I509 Uncharacterized protein3.7e-1036.3Show/hide
Query:  KIKGDKWK------RKARAKASLSD---MDQRIED-------DQIRDSMICEEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKAS
        K+  DKW       +       LSD   +DQ IE        D +  S    +A+ I KIPL S   +D +IW AS NGVFSV+SAYH+ ++ +N D+ S
Subjt:  KIKGDKWK------RKARAKASLSD---MDQRIED-------DQIRDSMICEEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKAS

Query:  -PSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKNL
          S+ S+ ++ W S W V++ P +K+   K  KN+
Subjt:  -PSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKNL

A0A803NML1 Uncharacterized protein2.6e-0839.02Show/hide
Query:  EADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKNL
        + D I+ IPL    G D ++WH S NG++SVK+ +HLA  L   D+ S S ++  ++ WK FW +++ P I++ A KV +N+
Subjt:  EADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKNL

A0A803P5M6 Uncharacterized protein2.6e-0839.02Show/hide
Query:  EADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKNL
        + D I+ IPL    G D ++WH S NG++SVK+ +HLA  L   D+ S S ++  ++ WK FW +++ P I++ A KV +N+
Subjt:  EADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKNL

A0A803PYN5 Uncharacterized protein2.4e-0940.86Show/hide
Query:  EADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKNLFHQKRT-FKRR
        + D I+ IPL    G D +IWH SSNG++SVKS ++LA NL     +SPSN   + + WK FW +++ P I++ + KV +N+       FKR+
Subjt:  EADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKNLFHQKRT-FKRR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGAGAACTCCAATGACCAATGGTGGAAAATGGAGAATAGTGATCGAAAGGAAAAATTACTGATCGATGGGGTGCGTCTTGTGATACAACGGTCGGATTTAACCAC
GGAGGTGCAGTCGAAGTCGCAGAATGTAGAAGCTACGGAGGGCAGTCAGAGATCTAGGGTGGAAGAGACAATGATGGGAGCTATTGCATATGATGGTGCGGGAAATATAT
TGGGATTTGGAAAAAAAGGCCTTTTAGGGCCTGAGGAGATGGAAAGTCGTCACAAAAGGGATGGTCTAGATTTTATTGGTAAAATCGGGAATAGTTCAAATGAGGGGCTG
TTGTCTGAAGGGAGGAAAAAAGTCATCTTAAAAACCAATGAAGAGGGGCATGACTCAGTAGATTATCCCACTAAATCCACGAGGAATCTCAATAGTGCCAAAACCCCAAT
GGCTAGAAAGGACCGAGAAGAATGGGAAAAATCTGGTTTGAAGCTTAATGCTCCTGTGGAGTCAGTAAATGCGAGTGAGCAAAATAGTATAGGGAAGCTCTTGGAGGCTG
ACATGGAGCTTGGTAAACAACGCTCAGCAACAGGGGCTAATGAATTTCATCCACCCATAAACAAAATAAAAGGGGATAAATGGAAAAGAAAGGCAAGAGCCAAAGCAAGC
TTGAGTGATATGGATCAGAGGATAGAAGATGATCAAATCAGAGACTCAATGATATGTGAGGAAGCTGATTGTATTGTTAAAATTCCTTTGGGTTCTTCCTTAGGAGAAGA
CGAGGTTATTTGGCACGCAAGCTCAAATGGGGTCTTTAGTGTAAAAAGTGCTTATCACCTTGCAATGAATTTATCAAATTTTGATAAGGCTTCTCCCTCTAACAATTCCA
TGATGGCCAAGATATGGAAATCCTTTTGGAAGGTTGAGATTGCTCCTATGATAAAAATGGGGGCACAGAAAGTGTTAAAAAATTTATTCCATCAAAAGCGAACATTCAAG
CGAAGGAGTGGATATCAACAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGAGAACTCCAATGACCAATGGTGGAAAATGGAGAATAGTGATCGAAAGGAAAAATTACTGATCGATGGGGTGCGTCTTGTGATACAACGGTCGGATTTAACCAC
GGAGGTGCAGTCGAAGTCGCAGAATGTAGAAGCTACGGAGGGCAGTCAGAGATCTAGGGTGGAAGAGACAATGATGGGAGCTATTGCATATGATGGTGCGGGAAATATAT
TGGGATTTGGAAAAAAAGGCCTTTTAGGGCCTGAGGAGATGGAAAGTCGTCACAAAAGGGATGGTCTAGATTTTATTGGTAAAATCGGGAATAGTTCAAATGAGGGGCTG
TTGTCTGAAGGGAGGAAAAAAGTCATCTTAAAAACCAATGAAGAGGGGCATGACTCAGTAGATTATCCCACTAAATCCACGAGGAATCTCAATAGTGCCAAAACCCCAAT
GGCTAGAAAGGACCGAGAAGAATGGGAAAAATCTGGTTTGAAGCTTAATGCTCCTGTGGAGTCAGTAAATGCGAGTGAGCAAAATAGTATAGGGAAGCTCTTGGAGGCTG
ACATGGAGCTTGGTAAACAACGCTCAGCAACAGGGGCTAATGAATTTCATCCACCCATAAACAAAATAAAAGGGGATAAATGGAAAAGAAAGGCAAGAGCCAAAGCAAGC
TTGAGTGATATGGATCAGAGGATAGAAGATGATCAAATCAGAGACTCAATGATATGTGAGGAAGCTGATTGTATTGTTAAAATTCCTTTGGGTTCTTCCTTAGGAGAAGA
CGAGGTTATTTGGCACGCAAGCTCAAATGGGGTCTTTAGTGTAAAAAGTGCTTATCACCTTGCAATGAATTTATCAAATTTTGATAAGGCTTCTCCCTCTAACAATTCCA
TGATGGCCAAGATATGGAAATCCTTTTGGAAGGTTGAGATTGCTCCTATGATAAAAATGGGGGCACAGAAAGTGTTAAAAAATTTATTCCATCAAAAGCGAACATTCAAG
CGAAGGAGTGGATATCAACAGTAG
Protein sequenceShow/hide protein sequence
MEENSNDQWWKMENSDRKEKLLIDGVRLVIQRSDLTTEVQSKSQNVEATEGSQRSRVEETMMGAIAYDGAGNILGFGKKGLLGPEEMESRHKRDGLDFIGKIGNSSNEGL
LSEGRKKVILKTNEEGHDSVDYPTKSTRNLNSAKTPMARKDREEWEKSGLKLNAPVESVNASEQNSIGKLLEADMELGKQRSATGANEFHPPINKIKGDKWKRKARAKAS
LSDMDQRIEDDQIRDSMICEEADCIVKIPLGSSLGEDEVIWHASSNGVFSVKSAYHLAMNLSNFDKASPSNNSMMAKIWKSFWKVEIAPMIKMGAQKVLKNLFHQKRTFK
RRSGYQQ