CuGenDBv2

Gene ID	Sed0024973
Organism	Sechium edule (Chayote v1)
Description	small GTPase LIP1-like
Genome location	LG05:45776762..45785866
RNA-Seq Expression	Sed0024973
Synteny	Sed0024973
Gene Ontology terms	GO:0006886 - intracellular protein transport (biological process) GO:0012505 - endomembrane system (cellular component) GO:0003924 - GTPase activity (molecular function) GO:0005525 - GTP binding (molecular function)
InterPro domains	IPR025662 - Sigma-54 interaction domain, ATP-binding site 1 IPR027417 - P-loop containing nucleoside triphosphate hydrolase

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6605289.1 Small GTPase LIP1, partial [Cucurbita argyrosperma subsp. sororia]

3.0e-158

83.38

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Query:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH
        MFWKDRDR+NKELN  PLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC +QTIGCTVGVKHIT GNAGSSSSSI GDAERDFFVELWDVSGHERYKDC 
Subjt:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH

Query:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE
        S FYSQINGVIFVHDLSQRRTKSSLQKWAVEIAT GTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGS+GNLVDAARQWVEKQGLLP+SEEIPLTE
Subjt:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP
        SFPGGGGL+AAAKEARYDKEAVTKFFRMLIRRRYFSDS PEAN WSM  VPKS          EDQ YSR SLT E +KY+ + PLPAQ NL   PTLYP
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP

Query:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHINTYDRSMTSSGNSSG
        QQPFSASENY+LPKFAL+ S EIN+STRSKR  IN        S ++SG
Subjt:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHINTYDRSMTSSGNSSG

KAG7035249.1 Small GTPase LIP1 [Cucurbita argyrosperma subsp. argyrosperma]

6.6e-158

85.97

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Query:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH
        MFWKDRDR+NKELN  PLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC +QTIGCTVGVKHIT GNAGSSSSSI GDAERDFFVELWDVSGHERYKDC 
Subjt:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH

Query:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE
        S FYSQINGVIFVHDLSQRRTKSSLQKWAVEIAT GTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGS+GNLVDAARQWVEKQGLLP+SEEIPLTE
Subjt:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP
        SFPGGGGL+AAAKEARYDKEAVTKFFRMLIRRRYFSDS PEAN WSM  VPKS          EDQ YSR SLT E +KY+ + PLPAQ NL   PTLYP
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP

Query:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN
        QQPFSASENY+LPKFAL+ S EIN+STRSKR  IN
Subjt:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN

XP_022947826.1 small GTPase LIP1-like [Cucurbita moschata]

4.6e-159

86.57

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Query:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH
        MFWKDRDR+NKELN  PLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC +QTIGCTVGVKHIT GNAGSSSSSI GDAERDFFVELWDVSGHERYKDC 
Subjt:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH

Query:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE
        S FYSQINGVIFVHDLSQRRTKSSLQKWAVEIAT GTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGS+GNLVDAARQWVEKQGLLP+SEEIPLTE
Subjt:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP
        SFPGGGGL+AAAKEARYDKEAVTKFFRMLIRRRYFSDS PEAN WSM  VPKS          EDQ YSR SLT E +KY+ + PLPAQ NL   PTLYP
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP

Query:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN
        QQPFSASENY+LPKFAL+TS EINNSTRSKR  IN
Subjt:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN

XP_023007041.1 small GTPase LIP1-like [Cucurbita maxima]

1.7e-158

86.27

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Query:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH
        MFWKDRDR+NKELN  PLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC +QTIGCTVGVKHIT GNAGSSSSSI GDAERDFFVELWDVSGHERYKDC 
Subjt:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH

Query:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE
        S FYSQINGVIFVHDLSQRRTKSSLQKWAVEIAT GTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGS+GNLVDAARQWVEKQGLLP+SEEIPLTE
Subjt:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP
        SFPGGGGL+AAAKEARYDKEAVTKFFRMLIRRRYFSDS PEAN WSM  VPKS          EDQ YSR SLT E +KY+ + PLPAQ NL   PTLYP
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP

Query:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN
        QQPFSASENY+LPKFAL+ S EINNSTRSKR  IN
Subjt:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN

XP_023533303.1 small GTPase LIP1-like [Cucurbita pepo subsp. pepo]

2.5e-157

85.67

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Query:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH
        MFWKDRDR+NKELN  PLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC +QTIGCTVGVKHIT GNAGSSSSSI GDAERDFFVELWDVSGHERYKDC 
Subjt:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH

Query:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE
        S FYSQINGVIFVHDLSQRRTKSSLQKWAVEIAT GTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGS+GNLVDAARQWVEKQGLLP+SEEIPLTE
Subjt:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP
        SFPGGGGL+AAAKEARYDKEAVTKFFRMLIRRRYFSDS PEAN WSM  VPKS          EDQ YSR SLT E +KY+ + PLPAQ NL   PTLYP
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP

Query:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN
        QQPFSASENY+LPKFAL+ S E N+STRSKR  IN
Subjt:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LMU9 Uncharacterized protein

4.5e-152

83.28

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Query:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH
        MFWKDRDRE+KELN  PLCGQVRVLVVGDSGVGKTSLVHLIVNGSSIS P+QTIGCTVGVKHIT GNAGSSSSSI GDAERDFFVELWDVSGH+RYKDC 
Subjt:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH

Query:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE
        S FYSQINGVIFVHDLSQRRTKSSLQKWAVEIAT GTFSAPLGSGGPGGLPVP+IVIGNK DIAAKEGTRGS+GNLVD ARQWVEKQGLL +SEEIPLTE
Subjt:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP
        SFPGGGGLLAAAKEARYDKEAVT FFR LIRRRYFSDS P A  WS+ PVPKS          E+Q YSR S + E +KY+A+ PLPAQ NL   PTLYP
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP

Query:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN
        QQPFSASENYSLPKFAL+ S EINNS+RSKR  IN
Subjt:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN

A0A5D3CQH6 Putative GTP-binding protein

7.7e-152

82.99

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Query:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH
        MFWKDRDRE+KELN  PLCGQVRVLVVGDSGVGKTSLVHLIVNGSSIS P+QTIGCTVGVKHIT GNAGSSSSSI GDAERDFFVELWDVSGH+RYKDC 
Subjt:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH

Query:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE
        S FYSQINGVIFVHDLSQRRTKSSLQKWAVEIAT GTFSAPLGSGGPGGLPVP+IVIGNK DIAAKEGTRGS+GNLVD ARQWVEKQGLL +SEEIPLTE
Subjt:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP
        SFPGGGGLLAAAKEARYDKEAVT FFR LIRRRYFSDS P A  WS+ PVPKS          E+Q YSR S + E +KY+A+ PLPAQ NL   PTLYP
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP

Query:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN
        QQPFSASENYSLPKFAL+ S E+NNS+RSKR  IN
Subjt:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN

A0A6J1DTZ0 small GTPase LIP1 isoform X2

1.3e-151

82.39

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Query:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH
        MFWKDRDRENKELN APLCGQVRVLVVGDSGVGKTSLVHLIVNGSS SCP+QTIGCTVGVKHIT GNAGSSSSSI GDAERDFFVELWDVSGHERYKDC 
Subjt:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH

Query:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE
        S FYSQINGVIFVHDLSQRRTKSSLQKWAVEIAT GTFSAPLGSGGPGGLPVP+IVIGNK DIAAK+G RGS+GNLVD ARQWVEKQGLLP+SEEIPLTE
Subjt:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP
        SFPG GGLLAAAKEARYDKEAVTKFFR LIRRRYFSDS P  N WS+ PV  S          +DQ YS GS+  E +KY+ +  LPAQ NL   PTLYP
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP

Query:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN
        QQPFS SENYSLPKFAL+ S E+NNSTRSKR  IN
Subjt:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN

A0A6J1G7J8 small GTPase LIP1-like

2.2e-159

86.57

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Query:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH
        MFWKDRDR+NKELN  PLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC +QTIGCTVGVKHIT GNAGSSSSSI GDAERDFFVELWDVSGHERYKDC 
Subjt:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH

Query:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE
        S FYSQINGVIFVHDLSQRRTKSSLQKWAVEIAT GTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGS+GNLVDAARQWVEKQGLLP+SEEIPLTE
Subjt:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP
        SFPGGGGL+AAAKEARYDKEAVTKFFRMLIRRRYFSDS PEAN WSM  VPKS          EDQ YSR SLT E +KY+ + PLPAQ NL   PTLYP
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP

Query:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN
        QQPFSASENY+LPKFAL+TS EINNSTRSKR  IN
Subjt:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN

A0A6J1KZF8 small GTPase LIP1-like

8.4e-159

86.27

Show/hide

Query:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH
        MFWKDRDR+NKELN  PLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISC +QTIGCTVGVKHIT GNAGSSSSSI GDAERDFFVELWDVSGHERYKDC 
Subjt:  MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCH

Query:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE
        S FYSQINGVIFVHDLSQRRTKSSLQKWAVEIAT GTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGS+GNLVDAARQWVEKQGLLP+SEEIPLTE
Subjt:  SPFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP
        SFPGGGGL+AAAKEARYDKEAVTKFFRMLIRRRYFSDS PEAN WSM  VPKS          EDQ YSR SLT E +KY+ + PLPAQ NL   PTLYP
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS----------EDQPYSRGSLTGEAFKYDAITPLPAQHNL---PTLYP

Query:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN
        QQPFSASENY+LPKFAL+ S EINNSTRSKR  IN
Subjt:  QQPFSASENYSLPKFALATSHEINNSTRSKRLHIN

SwissProt top hits

e value

%identity

Alignment

F4KFD8 Small GTPase-like protein LIP2

2.6e-120

68.06

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Query:  FWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHS
        FW++R RENKE  VAPLCGQ+RVLVVGDSGVGK+SLVHLIV GSSI  P+QTIGCTVGVKH+T  +  SSSS I GD+ERDFFVELWDVSGHERYKDC S
Subjt:  FWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHS

Query:  PFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTES
         FYSQINGVIFVHDLSQR TK++LQKWA E++ TG FSAPL SGGPGGLPVP+IVIGNKADIAAK GT GS+GNLVDAAR WVEKQGLLP+S+E+PL+ES
Subjt:  PFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTES

Query:  FPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANN-WSMPPVP--------KSEDQPYSRGSL-TGEAFKYDAITPLPAQHNL---PTLYPQ
        FP   GL+ AAKEARYDKEA+TK F MLIRRRYFSD  P  ++ WS+   P          EDQ Y R SL  G+A+KY+ +     QHNL   PTLYPQ
Subjt:  FPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANN-WSMPPVP--------KSEDQPYSRGSL-TGEAFKYDAITPLPAQHNL---PTLYPQ

Query:  QPFSASENYSLPKFALATSHEINNST-RSKRLHIN
        QP     NY++P+F+L++  E +N   RSKR+ IN
Subjt:  QPFSASENYSLPKFALATSHEINNST-RSKRLHIN

Q5HYI8 Rab-like protein 3

8.2e-18

33.12

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Query:  QVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGH----ERYKDCHSPFYSQINGVIFVHDL
        +V+VLV+GDSGVGK+SLVHL+     +  P+ T+GC+V V+ + +   G+         E+ +++ELWDV G        K   + FY+ +NG+IFVHDL
Subjt:  QVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGH----ERYKDCHSPFYSQINGVIFVHDL

Query:  SQRRTKSSLQKWAVE-----------IATTGTFSAPLGSGGPGGLPVPFIVIGNKAD
        + +++  +L++W++E           + T G +     +       +P +VIG K D
Subjt:  SQRRTKSSLQKWAVE-----------IATTGTFSAPLGSGGPGGLPVPFIVIGNKAD

Q5ZKR4 Rab-like protein 3

5.3e-17

34.64

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Query:  QVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGH----ERYKDCHSPFYSQINGVIFVHDL
        +V+VLV+GDSGVGK+SLVHL+ +   +  P+ T+GC+V V+ I +   G+         E+ +++ELWDV G        K   + FY+ +NG+I VHDL
Subjt:  QVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGH----ERYKDCHSPFYSQINGVIFVHDL

Query:  SQRRTKSSLQKWAVE-----IATTGTF--SAPLGSGGPGGLPVPFIVIGNKAD
        + +++  +L +W++E     +A TG    +            +P +VIG K D
Subjt:  SQRRTKSSLQKWAVE-----IATTGTF--SAPLGSGGPGGLPVPFIVIGNKAD

Q6TNS7 Rab-like protein 3

5.3e-17

35.48

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Query:  QVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGH----ERYKDCHSPFYSQINGVIFVHDL
        +V+VLV+GDSGVGK+SLVHL+     +  P+ T+GC+V V+ + +   G+         E+ F++ELWDV G        K   + FY+ +NG+I VHDL
Subjt:  QVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGH----ERYKDCHSPFYSQINGVIFVHDL

Query:  SQRRTKSSLQKWAVEIATTGTFSAPLG---SGGP------GGLPVPFIVIGNKAD
        + +++  +L +W++E  +    S+P G   S G           VP ++IG K D
Subjt:  SQRRTKSSLQKWAVEIATTGTFSAPLG---SGGP------GGLPVPFIVIGNKAD

Q9C5J9 Small GTPase LIP1

3.8e-132

71.98

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Query:  FWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHS
        FW++R+RENKE  +APLCGQVRVLVVGDSGVGKTSLVHLI  GSSI  P QTIGCTVGVKHIT G+  SSSSSI GD+ERDFFVELWDVSGHERYKDC S
Subjt:  FWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHS

Query:  PFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLP-YSEEIPLTE
         FYSQINGVIFVHDLSQRRTK+SLQKWA E+A TGTFSAPL SGGPGGLPVP+IV+GNKADIAAKEGT+GS+GNLVDAAR WVEKQGLLP  SE++PL E
Subjt:  PFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLP-YSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS-----------EDQPYSRGSLTGEAFKY-DAITPLPAQHNL---PTL
        SFPG GGL+AAAKE RYDKEA+ KFFRMLIRRRYFSD  P A+ WS+ PVP S           +DQ Y R S  G+ +KY + I PLPAQ NL   PTL
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS-----------EDQPYSRGSLTGEAFKY-DAITPLPAQHNL---PTL

Query:  YPQQPFSASENYSLPKFALATSHEI--NNSTRSKRLHIN
        YPQQP S  +NY++P+++L++  E   N S RSKR+ IN
Subjt:  YPQQPFSASENYSLPKFALATSHEI--NNSTRSKRLHIN

Arabidopsis top hits

e value

%identity

Alignment

AT1G22740.1 RAB GTPase homolog G3B

2.1e-13

29.14

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Query:  VRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHSPFYSQINGVIFVHDLSQRRT
        ++V+++GDSGVGKTSL++  VN       +Q    T+G   +T          +  D +R   +++WD +G ER++     FY   +  + V+D++  ++
Subjt:  VRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHSPFYSQINGVIFVHDLSQRRT

Query:  KSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVD--AARQWVEKQGLLPYSE
          SL  W  E  T  +   P+          PFI++GNK DI       G N  +V    AR+W  ++G + Y E
Subjt:  KSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVD--AARQWVEKQGLLPYSE

AT1G49300.1 RAB GTPase homolog G3E

2.1e-13

28.57

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Query:  VRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHSPFYSQINGVIFVHDLSQRRT
        ++V+++GDSGVGKTSL++  VN    +    TIG     K +                +R F +++WD +G ER++     FY   +  + V+D++  ++
Subjt:  VRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHSPFYSQINGVIFVHDLSQRRT

Query:  KSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVD--AARQWVEKQGLLPYSE
           L  W  E     + S P           PF+VIGNK D+       G +  +V    AR W   +G +PY E
Subjt:  KSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVD--AARQWVEKQGLLPYSE

AT1G49300.2 RAB GTPase homolog G3E

2.1e-13

28.57

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Query:  VRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHSPFYSQINGVIFVHDLSQRRT
        ++V+++GDSGVGKTSL++  VN    +    TIG     K +                +R F +++WD +G ER++     FY   +  + V+D++  ++
Subjt:  VRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHSPFYSQINGVIFVHDLSQRRT

Query:  KSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVD--AARQWVEKQGLLPYSE
           L  W  E     + S P           PF+VIGNK D+       G +  +V    AR W   +G +PY E
Subjt:  KSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVD--AARQWVEKQGLLPYSE

AT5G09910.1 Ras-related small GTP-binding family protein

1.8e-121

68.06

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Query:  FWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHS
        FW++R RENKE  VAPLCGQ+RVLVVGDSGVGK+SLVHLIV GSSI  P+QTIGCTVGVKH+T  +  SSSS I GD+ERDFFVELWDVSGHERYKDC S
Subjt:  FWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHS

Query:  PFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTES
         FYSQINGVIFVHDLSQR TK++LQKWA E++ TG FSAPL SGGPGGLPVP+IVIGNKADIAAK GT GS+GNLVDAAR WVEKQGLLP+S+E+PL+ES
Subjt:  PFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTES

Query:  FPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANN-WSMPPVP--------KSEDQPYSRGSL-TGEAFKYDAITPLPAQHNL---PTLYPQ
        FP   GL+ AAKEARYDKEA+TK F MLIRRRYFSD  P  ++ WS+   P          EDQ Y R SL  G+A+KY+ +     QHNL   PTLYPQ
Subjt:  FPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANN-WSMPPVP--------KSEDQPYSRGSL-TGEAFKYDAITPLPAQHNL---PTLYPQ

Query:  QPFSASENYSLPKFALATSHEINNST-RSKRLHIN
        QP     NY++P+F+L++  E +N   RSKR+ IN
Subjt:  QPFSASENYSLPKFALATSHEINNST-RSKRLHIN

AT5G64813.1 Ras-related small GTP-binding family protein

2.7e-133

71.98

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Query:  FWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHS
        FW++R+RENKE  +APLCGQVRVLVVGDSGVGKTSLVHLI  GSSI  P QTIGCTVGVKHIT G+  SSSSSI GD+ERDFFVELWDVSGHERYKDC S
Subjt:  FWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHS

Query:  PFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLP-YSEEIPLTE
         FYSQINGVIFVHDLSQRRTK+SLQKWA E+A TGTFSAPL SGGPGGLPVP+IV+GNKADIAAKEGT+GS+GNLVDAAR WVEKQGLLP  SE++PL E
Subjt:  PFYSQINGVIFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLP-YSEEIPLTE

Query:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS-----------EDQPYSRGSLTGEAFKY-DAITPLPAQHNL---PTL
        SFPG GGL+AAAKE RYDKEA+ KFFRMLIRRRYFSD  P A+ WS+ PVP S           +DQ Y R S  G+ +KY + I PLPAQ NL   PTL
Subjt:  SFPGGGGLLAAAKEARYDKEAVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKS-----------EDQPYSRGSLTGEAFKY-DAITPLPAQHNL---PTL

Query:  YPQQPFSASENYSLPKFALATSHEI--NNSTRSKRLHIN
        YPQQP S  +NY++P+++L++  E   N S RSKR+ IN
Subjt:  YPQQPFSASENYSLPKFALATSHEI--NNSTRSKRLHIN

Sequences

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CDS sequence

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ATGTTCTGGAAGGACCGTGATAGGGAAAACAAAGAACTCAATGTCGCTCCTCTCTGTGGTCAGGTTCGAGTGCTTGTGGTTGGTGATTCAGGTGTGGGGAAAACATCTCT
TGTTCATTTGATTGTAAACGGTTCTTCTATTTCTTGCCCTACTCAAACTATAGGTTGTACAGTTGGAGTTAAGCATATCACCAATGGAAATGCCGGTAGCTCTTCAAGTA
GCATAAACGGTGATGCTGAGAGAGATTTCTTTGTTGAACTTTGGGATGTGTCAGGGCATGAGCGCTACAAAGACTGTCACTCTCCTTTCTATTCTCAGATTAATGGTGTC
ATTTTTGTTCATGATCTTTCCCAGAGAAGAACAAAATCAAGCCTACAGAAGTGGGCAGTAGAGATTGCAACAACTGGGACATTTTCAGCTCCCTTGGGATCGGGAGGCCC
TGGTGGCCTTCCTGTGCCTTTTATTGTTATTGGTAACAAAGCGGATATTGCTGCTAAAGAGGGCACAAGAGGAAGTAATGGTAATCTAGTTGATGCTGCTCGCCAGTGGG
TTGAGAAGCAGGGTCTGCTTCCCTACAGTGAAGAAATTCCACTAACTGAAAGTTTCCCTGGCGGTGGAGGACTTCTTGCTGCTGCCAAAGAGGCGAGATATGACAAGGAA
GCTGTGACCAAATTTTTCCGCATGCTCATACGGAGAAGGTATTTCTCAGATAGTTCACCTGAAGCAAATAATTGGTCCATGCCTCCAGTTCCAAAATCTGAGGATCAGCC
CTATAGTCGTGGAAGTTTAACGGGAGAAGCGTTCAAGTACGATGCAATTACTCCGCTCCCGGCACAACACAATCTTCCTACGCTTTATCCCCAGCAGCCATTTTCAGCTT
CTGAAAACTACAGCCTTCCAAAATTCGCTCTTGCAACCTCCCATGAGATCAACAATTCTACCAGATCAAAGCGCTTGCATATTAACACGTATGATAGGTCAATGACGAGT
TCGGGCAACAGCAGTGGCATGGCATACTATATATATATGAATGACGAGTTCGGGCAACAGCAGTAG

mRNA sequence

Show/hide mRNA sequence

GCGTGGTTTTACCCTTCGTCGGTGTTTATCGTTCTTCGTCTTCCCAACTCTGAACTTCACTCTCAAGTTTTCTTCTCCTTCATTTCACTGTTCATTTCTCTCGAACTTTC
AAACCCTAGCTACTTATTCGATTGAGCCGCTAGATCGTTGCTTTTGGGCATGGATTTTTCGATTTCAGCTTTCATCTGCATTTTGGTCTCATCGTGATATGGATTTCAGA
TTGAAATCCGAGGTTCTTATGCTGAGAAATGGTTATTTCTGGAGATTGTACTTAATTACTGAATTCTTCTTCGGAGGCGAATACGGTTCATAAGGTCTTGAAGAAAACAT
GTTCTGGAAGGACCGTGATAGGGAAAACAAAGAACTCAATGTCGCTCCTCTCTGTGGTCAGGTTCGAGTGCTTGTGGTTGGTGATTCAGGTGTGGGGAAAACATCTCTTG
TTCATTTGATTGTAAACGGTTCTTCTATTTCTTGCCCTACTCAAACTATAGGTTGTACAGTTGGAGTTAAGCATATCACCAATGGAAATGCCGGTAGCTCTTCAAGTAGC
ATAAACGGTGATGCTGAGAGAGATTTCTTTGTTGAACTTTGGGATGTGTCAGGGCATGAGCGCTACAAAGACTGTCACTCTCCTTTCTATTCTCAGATTAATGGTGTCAT
TTTTGTTCATGATCTTTCCCAGAGAAGAACAAAATCAAGCCTACAGAAGTGGGCAGTAGAGATTGCAACAACTGGGACATTTTCAGCTCCCTTGGGATCGGGAGGCCCTG
GTGGCCTTCCTGTGCCTTTTATTGTTATTGGTAACAAAGCGGATATTGCTGCTAAAGAGGGCACAAGAGGAAGTAATGGTAATCTAGTTGATGCTGCTCGCCAGTGGGTT
GAGAAGCAGGGTCTGCTTCCCTACAGTGAAGAAATTCCACTAACTGAAAGTTTCCCTGGCGGTGGAGGACTTCTTGCTGCTGCCAAAGAGGCGAGATATGACAAGGAAGC
TGTGACCAAATTTTTCCGCATGCTCATACGGAGAAGGTATTTCTCAGATAGTTCACCTGAAGCAAATAATTGGTCCATGCCTCCAGTTCCAAAATCTGAGGATCAGCCCT
ATAGTCGTGGAAGTTTAACGGGAGAAGCGTTCAAGTACGATGCAATTACTCCGCTCCCGGCACAACACAATCTTCCTACGCTTTATCCCCAGCAGCCATTTTCAGCTTCT
GAAAACTACAGCCTTCCAAAATTCGCTCTTGCAACCTCCCATGAGATCAACAATTCTACCAGATCAAAGCGCTTGCATATTAACACGTATGATAGGTCAATGACGAGTTC
GGGCAACAGCAGTGGCATGGCATACTATATATATATGAATGACGAGTTCGGGCAACAGCAGTAGCATGGCGTACTATAAATATATGAGTATGAATGTCTGCAC

Protein sequence

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MFWKDRDRENKELNVAPLCGQVRVLVVGDSGVGKTSLVHLIVNGSSISCPTQTIGCTVGVKHITNGNAGSSSSSINGDAERDFFVELWDVSGHERYKDCHSPFYSQINGV
IFVHDLSQRRTKSSLQKWAVEIATTGTFSAPLGSGGPGGLPVPFIVIGNKADIAAKEGTRGSNGNLVDAARQWVEKQGLLPYSEEIPLTESFPGGGGLLAAAKEARYDKE
AVTKFFRMLIRRRYFSDSSPEANNWSMPPVPKSEDQPYSRGSLTGEAFKYDAITPLPAQHNLPTLYPQQPFSASENYSLPKFALATSHEINNSTRSKRLHINTYDRSMTS
SGNSSGMAYYIYMNDEFGQQQ

Sed0024973 (gene) of Chayote v1 genome