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Sed0024982 (gene) of Chayote v1 genome

Gene IDSed0024982
OrganismSechium edule (Chayote v1)
DescriptionProteasome subunit alpha type-5
Genome locationLG10:864680..865079
RNA-Seq ExpressionSed0024982
SyntenySed0024982
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052545.1 hypothetical protein E6C27_scaffold120G001480 [Cucumis melo var. makuwa]1.2e-1644.59Show/hide
Query:  MGFKIQSS---SSSPNHHLIYYFSISLSLILFFLLIS-SSSAKSLPQTSRPLRRHRTTTLHGGAS----------------AANKLQIMKIINK------
        MGFKI SS    SSPN+  + +F ISLSLILFFL+ S +SS K LP  S  +    T  +HG A                  + KL++   INK      
Subjt:  MGFKIQSS---SSSPNHHLIYYFSISLSLILFFLLIS-SSSAKSLPQTSRPLRRHRTTTLHGGAS----------------AANKLQIMKIINK------

Query:  ------------NKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPE--SVAFYCHL
                    N NK ++K   FSVMLPKGFVPPSGSSPCHN+ P+  S+AFYCHL
Subjt:  ------------NKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPE--SVAFYCHL

KAG6581427.1 hypothetical protein SDJN03_21429, partial [Cucurbita argyrosperma subsp. sororia]3.5e-2154.55Show/hide
Query:  MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLI-SSSSAKSLPQTSR-PLRRHRTTTLHGGASA---------------ANKLQIMKIINKNK-------
        MGFKIQS           +F IS+SLILFFLLI SSSSAK LP  S   L RHR TTLHGGA                 ANKLQ M I NK+K       
Subjt:  MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLI-SSSSAKSLPQTSR-PLRRHRTTTLHGGASA---------------ANKLQIMKIINKNK-------

Query:  ------NKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPE--SVAFYCHLSATNN
                N+NK   FSVMLPKGFVPPSGSSPCHNQ P+  S AFYCHLSA  N
Subjt:  ------NKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPE--SVAFYCHLSATNN

KAG6594469.1 hypothetical protein SDJN03_11022, partial [Cucurbita argyrosperma subsp. sororia]1.4e-2562.99Show/hide
Query:  MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLISSSSAKSLPQTSRPLRRH--RTTTLHGGAS----AANKLQIMKIINKNKNKNSNKAMVFSVMLPKGF
        MGFKIQ  S SPN+  +YY SISLSLILFFLLIS SSA+ LP     L  H    TTLH GA      A KLQ    +  NK K  NK   FS MLPKGF
Subjt:  MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLISSSSAKSLPQTSRPLRRH--RTTTLHGGAS----AANKLQIMKIINKNKNKNSNKAMVFSVMLPKGF

Query:  VPPSGSSPCHNQVPESVAFYCHLSATN
        VPPSGSSPCHN+ PE VAFYCHLSATN
Subjt:  VPPSGSSPCHNQVPESVAFYCHLSATN

KAG7026467.1 hypothetical protein SDJN02_10467, partial [Cucurbita argyrosperma subsp. argyrosperma]9.5e-2764.57Show/hide
Query:  MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLISSSSAKSLPQTSRPLRRH--RTTTLHGGAS----AANKLQIMKIINKNKNKNSNKAMVFSVMLPKGF
        MGFKIQ  S SPN+  +YY SISLSLILFFLLISSSSA+ LP     L  H    TTLH GA      A KLQ    +  NK K  NKA  FS MLPKGF
Subjt:  MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLISSSSAKSLPQTSRPLRRH--RTTTLHGGAS----AANKLQIMKIINKNKNKNSNKAMVFSVMLPKGF

Query:  VPPSGSSPCHNQVPESVAFYCHLSATN
        VPPSGSSPCHN+ PE VAFYCHLSATN
Subjt:  VPPSGSSPCHNQVPESVAFYCHLSATN

KGN49393.1 hypothetical protein Csa_004373 [Cucumis sativus]3.6e-1846.84Show/hide
Query:  MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLI-SSSSAKSLPQTSRPLRRHRTTTLHGGASA-----------------ANKLQIMKIINK--------
        MGFKI SS SSPN+  + +F ISLSLILFFLL  ++SS K LP       RHRTT +HG A                   +NKL++   INK        
Subjt:  MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLI-SSSSAKSLPQTSRPLRRHRTTTLHGGASA-----------------ANKLQIMKIINK--------

Query:  -------------NKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPE--SVAFYCHL
                     +KNKN +K   FS MLPKGFVPPSGSSPCHN+ P+  S+AFYCHL
Subjt:  -------------NKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPE--SVAFYCHL

TrEMBL top hitse value%identityAlignment
A0A0A0KIK1 Uncharacterized protein1.7e-1846.84Show/hide
Query:  MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLI-SSSSAKSLPQTSRPLRRHRTTTLHGGASA-----------------ANKLQIMKIINK--------
        MGFKI SS SSPN+  + +F ISLSLILFFLL  ++SS K LP       RHRTT +HG A                   +NKL++   INK        
Subjt:  MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLI-SSSSAKSLPQTSRPLRRHRTTTLHGGASA-----------------ANKLQIMKIINK--------

Query:  -------------NKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPE--SVAFYCHL
                     +KNKN +K   FS MLPKGFVPPSGSSPCHN+ P+  S+AFYCHL
Subjt:  -------------NKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPE--SVAFYCHL

A0A498JU20 Uncharacterized protein4.3e-0948.65Show/hide
Query:  PLRRHRTTTLHGGASAANKLQIMKIINKNKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPESVAFYCHLSAT
        P+++HR            K++  + +NK   K   K   FSVMLPKGFVPPSGSSPCHN  P SVAF+C L+ T
Subjt:  PLRRHRTTTLHGGASAANKLQIMKIINKNKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPESVAFYCHLSAT

A0A5A7UFQ9 Uncharacterized protein5.6e-1744.59Show/hide
Query:  MGFKIQSS---SSSPNHHLIYYFSISLSLILFFLLIS-SSSAKSLPQTSRPLRRHRTTTLHGGAS----------------AANKLQIMKIINK------
        MGFKI SS    SSPN+  + +F ISLSLILFFL+ S +SS K LP  S  +    T  +HG A                  + KL++   INK      
Subjt:  MGFKIQSS---SSSPNHHLIYYFSISLSLILFFLLIS-SSSAKSLPQTSRPLRRHRTTTLHGGAS----------------AANKLQIMKIINK------

Query:  ------------NKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPE--SVAFYCHL
                    N NK ++K   FSVMLPKGFVPPSGSSPCHN+ P+  S+AFYCHL
Subjt:  ------------NKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPE--SVAFYCHL

A0A6A4PAU6 Uncharacterized protein2.5e-0938.02Show/hide
Query:  ISLSLILFFLLISSSSAKSLPQTSRPLRRHRTTTLH------------GGASAANKLQIMKIINKNK------NKNSNKAMVFSVMLPKGFVPPSGSSPC
        + ++L   FL+  ++S+ S  Q  +P     TT  H               S    ++  K + +NK       KN+ K   FSVMLPKGFVPPSGSSPC
Subjt:  ISLSLILFFLLISSSSAKSLPQTSRPLRRHRTTTLH------------GGASAANKLQIMKIINKNK------NKNSNKAMVFSVMLPKGFVPPSGSSPC

Query:  HNQVPESVAF-YCHLSATNNP
        HN +P SV+F +CHL++T+ P
Subjt:  HNQVPESVAF-YCHLSATNNP

A0A6A5PBU7 Uncharacterized protein2.5e-0938.02Show/hide
Query:  ISLSLILFFLLISSSSAKSLPQTSRPLRRHRTTTLH------------GGASAANKLQIMKIINKNK------NKNSNKAMVFSVMLPKGFVPPSGSSPC
        + ++L   FL+  ++S+ S  Q  +P     TT  H               S    ++  K + +NK       KN+ K   FSVMLPKGFVPPSGSSPC
Subjt:  ISLSLILFFLLISSSSAKSLPQTSRPLRRHRTTTLH------------GGASAANKLQIMKIINKNK------NKNSNKAMVFSVMLPKGFVPPSGSSPC

Query:  HNQVPESVAF-YCHLSATNNP
        HN +P SV+F +CHL++T+ P
Subjt:  HNQVPESVAF-YCHLSATNNP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G18335.1 unknown protein2.1e-0861.7Show/hide
Query:  KNKNSNKAM---VFSVMLPKGFVPPSGSSPCHNQVPES-VAFYCHLS
        KN   N+ +    FSVMLPKGFVPPSGSSPCHNQ P S    +C LS
Subjt:  KNKNSNKAM---VFSVMLPKGFVPPSGSSPCHNQVPES-VAFYCHLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTTTCAAGATTCAATCCTCTTCTTCATCACCAAATCATCACCTGATCTACTACTTCTCAATCTCTCTTTCTCTAATCCTCTTCTTTCTCTTAATCTCTTCCTCATC
CGCTAAATCCCTTCCTCAAACGTCGCGCCCGCTCCGCCGCCACCGGACTACCACCCTCCACGGCGGCGCATCCGCCGCCAACAAGTTGCAAATCATGAAGATCATCAACA
AGAACAAGAACAAGAACAGCAATAAGGCAATGGTTTTTTCTGTGATGCTTCCAAAGGGATTTGTCCCTCCTTCTGGCTCGTCTCCTTGCCATAACCAAGTTCCTGAATCT
GTTGCATTTTACTGCCATCTTTCTGCCACCAATAATCCTTGA
mRNA sequenceShow/hide mRNA sequence
TTTTCTTTCTTTCTCTCTCTCAACTCAAATGGGTTTCAAGATTCAATCCTCTTCTTCATCACCAAATCATCACCTGATCTACTACTTCTCAATCTCTCTTTCTCTAATCC
TCTTCTTTCTCTTAATCTCTTCCTCATCCGCTAAATCCCTTCCTCAAACGTCGCGCCCGCTCCGCCGCCACCGGACTACCACCCTCCACGGCGGCGCATCCGCCGCCAAC
AAGTTGCAAATCATGAAGATCATCAACAAGAACAAGAACAAGAACAGCAATAAGGCAATGGTTTTTTCTGTGATGCTTCCAAAGGGATTTGTCCCTCCTTCTGGCTCGTC
TCCTTGCCATAACCAAGTTCCTGAATCTGTTGCATTTTACTGCCATCTTTCTGCCACCAATAATCCTTGA
Protein sequenceShow/hide protein sequence
MGFKIQSSSSSPNHHLIYYFSISLSLILFFLLISSSSAKSLPQTSRPLRRHRTTTLHGGASAANKLQIMKIINKNKNKNSNKAMVFSVMLPKGFVPPSGSSPCHNQVPES
VAFYCHLSATNNP