CuGenDBv2

Gene ID	Sed0024996
Organism	Sechium edule (Chayote v1)
Description	Mediator of RNA polymerase II transcription subunit 32
Genome location	LG01:2376367..2378274
RNA-Seq Expression	Sed0024996
Synteny	Sed0024996
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0009631 - cold acclimation (biological process) GO:0010150 - leaf senescence (biological process) GO:0048364 - root development (biological process) GO:0016592 - mediator complex (cellular component)
InterPro domains	IPR033244 - Mediator of RNA polymerase II transcription subunit 32

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0045925.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]

1.3e-67

95.89

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAA+SASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

TYK13665.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis melo var. makuwa]

3.8e-67

95.21

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAA+SASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

XP_004148855.1 mediator of RNA polymerase II transcription subunit 32 [Cucumis sativus]

2.2e-67

95.89

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+AT  LPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAA+SASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

XP_008457936.1 PREDICTED: mediator of RNA polymerase II transcription subunit 32 [Cucumis melo]

3.8e-67

95.21

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAA+SASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

XP_038902813.1 mediator of RNA polymerase II transcription subunit 32 [Benincasa hispida]

3.5e-68

96.58

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAAT G+PPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAA+SASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LIN7 Uncharacterized protein

1.1e-67

95.89

Show/hide

Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+AT  LPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAA+SASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

A0A1S3C6T6 mediator of RNA polymerase II transcription subunit 32

1.8e-67

95.21

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAA+SASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

A0A5A7TWZ7 Mediator of RNA polymerase II transcription subunit 32

6.4e-68

95.89

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAA+SASAHSH SAPFDARFTEDATQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

A0A5D3CQ46 Mediator of RNA polymerase II transcription subunit 32

1.8e-67

95.21

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV
        MDSLVDSLNNAYQEFVAGAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQ+ T GLPPISAV
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAV

Query:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        RLEQMSKAVRWLVIELQHGSGAA+SASAHSH SAPFDARFTED TQ
Subjt:  RLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

A0A6J1JH28 mediator of RNA polymerase II transcription subunit 32-like isoform X2

2.7e-66

94.63

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Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA--TAGLPPIS
        MDSLVDSLNNAYQEFV+GAANVLEANE SGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA  T GLPPIS
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAA--TAGLPPIS

Query:  AVRLEQMSKAVRWLVIELQHGSG-AASSASAHSHPSAPFDARFTEDATQ
        A+RLEQMSKAVRWLVIELQHGSG AA+SASAHSHPSAPFDARFTEDATQ
Subjt:  AVRLEQMSKAVRWLVIELQHGSG-AASSASAHSHPSAPFDARFTEDATQ

SwissProt top hits

e value

%identity

Alignment

Q84VW5 Mediator of RNA polymerase II transcription subunit 32

3.3e-45

67.97

Show/hide

Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATAG----
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG   + AG    AA  G    
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATAG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG A   S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G11760.1 MED32; Has 41 Blast hits to 40 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

2.3e-46

67.97

Show/hide

Query:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATAG----
        MD++VDSLN AY++FV  +A VLE+ E++G QK   TD ALENFK+KWELFRVACDQAEEFVESVKQRIGSECLVDEATG   + AG    AA  G    
Subjt:  MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATG---SLAGKSGQAATAG----

Query:  LPPISAVRLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ
        LPPISAVRLEQMS+AVRWLV+ELQ GSG A   S HS  S  FD+RF+ED+TQ
Subjt:  LPPISAVRLEQMSKAVRWLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

Sequences

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CDS sequence

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ATGGACAGCCTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCTGGTGCAGCCAACGTCCTCGAAGCAAATGAAACGTCTGGGGCTCAGAAGACAGCGGCAAC
AGATGCTGCTCTTGAGAATTTTAAACAAAAATGGGAGCTGTTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTAAAGCAAAGGATAGGATCAGAGTGTC
TGGTCGATGAGGCCACTGGTTCGCTGGCCGGTAAGTCTGGACAGGCTGCCACTGCCGGCCTTCCGCCAATTAGTGCCGTTCGGCTGGAACAAATGAGCAAAGCTGTGAGA
TGGCTTGTGATTGAGTTGCAGCATGGCTCTGGAGCTGCTTCTTCTGCTTCAGCACACTCTCATCCTTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATA
G

mRNA sequence

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TTAAATTGTTCATTTTCCCGAAAGCTTGATTAAAAAAAGAAATCGGTAAACAATTTTCTTCTAGCACACCATAAGCCTCGCGCTCGCTTCCCTGGCCGTCGTTCTTCGTC
CGCCGCCGTACTCGCGAGTTACAGCCGCACCAGTGTCGCCGTCCCCCGCAGGTCGTTGTCGGTCTCTCGACGGTGCAGCCTCGTTCCGCCCGTGTTATGCGCGAGGGTCC
TGTTCATTCTCTGACCAGATCTGCCCGCCAATCTCGAGCAGCGCCGCCGTGAATATCCCTTTTTCGTCCAGCTGTGTTTGGTTCCAGATTTGGGGTATTCTGATATGGAC
AGCCTAGTGGACTCTTTAAATAATGCATATCAGGAGTTTGTTGCTGGTGCAGCCAACGTCCTCGAAGCAAATGAAACGTCTGGGGCTCAGAAGACAGCGGCAACAGATGC
TGCTCTTGAGAATTTTAAACAAAAATGGGAGCTGTTCAGGGTTGCTTGTGATCAAGCAGAGGAGTTTGTAGAGTCTGTAAAGCAAAGGATAGGATCAGAGTGTCTGGTCG
ATGAGGCCACTGGTTCGCTGGCCGGTAAGTCTGGACAGGCTGCCACTGCCGGCCTTCCGCCAATTAGTGCCGTTCGGCTGGAACAAATGAGCAAAGCTGTGAGATGGCTT
GTGATTGAGTTGCAGCATGGCTCTGGAGCTGCTTCTTCTGCTTCAGCACACTCTCATCCTTCTGCTCCTTTTGATGCTAGATTTACTGAGGATGCAACCCAATAGGTACC
CATATTATATAGCTTTACCATAATAATATTTTGTGTTTTGCATGGAACCTCTCTTGGGGGGGTGGGGAATTAACTGTGAAAGATATATTATCTTGAACTTTGACTGAATG
TGAAAAAATGAAACCATTACTCCTAATCTCAGTTAACTAATATTTACTTTCA

Protein sequence

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MDSLVDSLNNAYQEFVAGAANVLEANETSGAQKTAATDAALENFKQKWELFRVACDQAEEFVESVKQRIGSECLVDEATGSLAGKSGQAATAGLPPISAVRLEQMSKAVR
WLVIELQHGSGAASSASAHSHPSAPFDARFTEDATQ

Sed0024996 (gene) of Chayote v1 genome