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Sed0025010 (gene) of Chayote v1 genome

Gene IDSed0025010
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG09:7614293..7614655
RNA-Seq ExpressionSed0025010
SyntenySed0025010
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3622233.1 hypothetical protein FXO38_31400 [Capsicum annuum]1.5e-2965.52Show/hide
Query:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMH
        +   KF++EKFDGR+NFG+WQVQVKDVLIQSGLHKALK RP+   SEK   D   +E    SSK S+KS +SD+EWEE+D+KAAS I L LAKNVLAN+ 
Subjt:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMH

Query:  GISTAKELWEKLEAMY
        G+ST KELWEKLE +Y
Subjt:  GISTAKELWEKLEAMY

KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]5.8e-2962.93Show/hide
Query:  SSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGG-DSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMH
        +S++++VEKFDGR+NFGLWQVQVKDVLIQSGLHKALKGRP+    S+ S+ D           +   +S MSD++WE++DL+AASAI L LAKNVLAN+H
Subjt:  SSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGG-DSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMH

Query:  GISTAKELWEKLEAMY
        GISTAK+LWEKLE +Y
Subjt:  GISTAKELWEKLEAMY

KAF7802225.1 cytochrome p450 [Senna tora]4.3e-3265.83Show/hide
Query:  MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVL
        M+ F S+VKFDVEKFDGR+NFGLWQVQVKDVLIQSGLHKAL+G+ S  DSEKS                  +SSMSD +WEE+DL+AAS I L+LAKNVL
Subjt:  MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVL

Query:  ANMHGISTAKELWEKLEAMY
        AN+ GISTAKELW+KLE +Y
Subjt:  ANMHGISTAKELWEKLEAMY

KAF7810708.1 cytochrome p450 [Senna tora]1.2e-2963.33Show/hide
Query:  MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVL
        M+ F S++KFDVEKFDGR+NFG WQVQVKDVLIQSGL KAL+G+ S  DSEKS                  +SSMSD +WEE+DL+AAS I L LAKNVL
Subjt:  MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVL

Query:  ANMHGISTAKELWEKLEAMY
        AN+ GISTAKELW+KLE +Y
Subjt:  ANMHGISTAKELWEKLEAMY

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.9e-4078.33Show/hide
Query:  MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVL
        M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK   DGG  ESSGGSS+GSKKSSMS ++WEEMDL+AASAI  +LAKN+L
Subjt:  MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVL

Query:  ANMHGISTAKELWEKLEAMY
        AN+H ISTAKELWEKLEA+Y
Subjt:  ANMHGISTAKELWEKLEAMY

TrEMBL top hitse value%identityAlignment
A0A2G2YJH4 Uncharacterized protein7.6e-2760.68Show/hide
Query:  FMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANM
        +M   KF++EKFDGR+NFGLWQVQVKDVLIQSGLHKALK RP+ G  +K   D    E    SS+ S+KS +SD+EWEE+D+K  S I L LAK VL N+
Subjt:  FMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANM

Query:  HGISTAKELWEKLEAMY
         G+ST K+LWEKLE +Y
Subjt:  HGISTAKELWEKLEAMY

A0A2G3AMB5 Uncharacterized protein2.0e-2764.71Show/hide
Query:  TSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLA
        T      KF++EKFDGR+NF LWQVQVKDVLIQSGL+KALK RP+   SEK  GD  S +S   SSK S+K  +SD+EWEE+D+KAAS I L LAKNVLA
Subjt:  TSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLA

Query:  NMHGISTAKELWEKLEAMY
        N+ G+ST KELWEKLE +Y
Subjt:  NMHGISTAKELWEKLEAMY

A0A6A3BK59 CCHC-type domain-containing protein1.3e-2660.53Show/hide
Query:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGI
        S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S+ +G   +    SS    KS MS++EWEE+D++AAS I L LAKNVLAN+   
Subjt:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGI

Query:  STAKELWEKLEAMY
        S+ KELWEKLE MY
Subjt:  STAKELWEKLEAMY

A0A6A3CWI3 CCHC-type domain-containing protein1.3e-2660.53Show/hide
Query:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGI
        S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S+ +G   +    SS    KS MS++EWEE+D++AAS I L LAKNVLAN+   
Subjt:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGI

Query:  STAKELWEKLEAMY
        S+ KELWEKLE MY
Subjt:  STAKELWEKLEAMY

A0A6J1CG82 uncharacterized protein LOC1110105219.3e-4178.33Show/hide
Query:  MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVL
        M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK   DGG  ESSGGSS+GSKKSSMS ++WEEMDL+AASAI  +LAKN+L
Subjt:  MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVL

Query:  ANMHGISTAKELWEKLEAMY
        AN+H ISTAKELWEKLEA+Y
Subjt:  ANMHGISTAKELWEKLEAMY

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-944.3e-1133.62Show/hide
Query:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMH
        MS VK++V KF+G   F  WQ +++D+LIQ GLHK L                             K  +M  ++W ++D +AASAI L+L+ +V+ N+ 
Subjt:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMH

Query:  GISTAKELWEKLEAMY
           TA+ +W +LE++Y
Subjt:  GISTAKELWEKLEAMY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGTAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTGATACAATCTGGATT
ACACAAGGCTTTGAAAGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAATCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGTAAAGGTTCAAAGAAGTCCA
GCATGAGTGATGACGAATGGGAGGAAATGGATTTGAAGGCTGCAAGTGCCATCATGTTAAATTTGGCTAAAAATGTTCTTGCTAATATGCATGGAATATCAACAGCCAAA
GAGCTTTGGGAGAAGCTTGAAGCGATGTATTAG
mRNA sequenceShow/hide mRNA sequence
ATGACAAGCTTTATGAGTTCAGTGAAGTTTGATGTGGAGAAATTTGATGGTAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTGATACAATCTGGATT
ACACAAGGCTTTGAAAGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAATCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGTAAAGGTTCAAAGAAGTCCA
GCATGAGTGATGACGAATGGGAGGAAATGGATTTGAAGGCTGCAAGTGCCATCATGTTAAATTTGGCTAAAAATGTTCTTGCTAATATGCATGGAATATCAACAGCCAAA
GAGCTTTGGGAGAAGCTTGAAGCGATGTATTAG
Protein sequenceShow/hide protein sequence
MTSFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSIGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLKAASAIMLNLAKNVLANMHGISTAK
ELWEKLEAMY