CuGenDBv2

Gene ID	Sed0025018
Organism	Sechium edule (Chayote v1)
Description	INO80 complex subunit C
Genome location	LG03:43459188..43467633
RNA-Seq Expression	Sed0025018
Synteny	Sed0025018
Gene Ontology terms	GO:0006338 - chromatin remodeling (biological process) GO:0006468 - protein phosphorylation (biological process) GO:0031011 - Ino80 complex (cellular component) GO:0004672 - protein kinase activity (molecular function) GO:0005524 - ATP binding (molecular function)
InterPro domains	IPR013272 - Vps72/YL1, C-terminal IPR029525 - INO80 complex, subunit Ies6

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008441777.1 PREDICTED: INO80 complex subunit C isoform X1 [Cucumis melo]

2.8e-63

95.16

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEP+VIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+N SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_022144563.1 INO80 complex subunit C isoform X1 [Momordica charantia]

5.2e-65

97.58

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEP+VIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN SPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAVILR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_022937916.1 INO80 complex subunit C isoform X1 [Cucurbita moschata]

3.4e-64

96.77

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEP+VIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN S DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_031736376.1 INO80 complex subunit C isoform X1 [Cucumis sativus]

3.7e-63

95.16

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        ME +VIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

XP_038889510.1 INO80 complex subunit C isoform X1 [Benincasa hispida]

4.4e-64

95.97

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEP+VIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LJN6 YL1_C domain-containing protein

1.8e-63

95.16

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        ME +VIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A1S3B479 INO80 complex subunit C isoform X1

1.4e-63

95.16

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEP+VIEAELVLP HLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENY+N SPDEPNYVNIESPPSMHPCK+ICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A6J1CRZ9 INO80 complex subunit C isoform X1

2.5e-65

97.58

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEP+VIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN SPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANAD+FK
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAVILR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A6J1FBP9 INO80 complex subunit C isoform X1

1.6e-64

96.77

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEP+VIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN S DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

A0A6J1HLV4 INO80 complex subunit C isoform X1

1.6e-64

96.77

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        MEP+VIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHN S DEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
        VIRSLPNEYVQRYLAMRNAAV+LR
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

SwissProt top hits

e value

%identity

Alignment

P32617 Chromatin-remodeling complex subunit IES6

6.0e-08

37.31

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Query:  YVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVILR
        Y ++E+PPS+ P KK CD+TG +  Y  P   +RY NA+I++ +++ +     Q YL +R A  +L+
Subjt:  YVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK-VIRSLPNEYVQRYLAMRNAAVILR

Q5BJY3 INO80 complex subunit C

1.5e-14

42.86

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Query:  RGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL
        + R WK+LKQIL AE       ++PNY +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YL +R A  I+
Subjt:  RGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL

Q6PI98 INO80 complex subunit C

1.5e-14

42.86

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Query:  RGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL
        + R WK+LKQIL +E       ++PNY +I++PPS  P KK  D++G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  I+
Subjt:  RGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL

Q8BHA0 INO80 complex subunit C

3.9e-15

45.05

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Query:  RGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL
        + R WK+LKQIL AE       ++PNY +I++PPS  P KK  DI+G  A Y DP++ LR++  + F  IR LP++ V  YLA+R A  I+
Subjt:  RGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVIL

Q9UTE8 Chromatin-remodeling complex subunit ies6

9.6e-14

41.24

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Query:  PKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVILR
        P  +++ R  ++L+QI+Q +   N  P + +Y +IE+PPS+ P  K CD+TG  A Y DP+T LRY N +I+ +IR LP+   Q YL +R++ V+L+
Subjt:  PKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYVQRYLAMRNAAVILR

Arabidopsis top hits

e value

%identity

Alignment

AT2G36740.1 sequence-specific DNA binding transcription factors;DNA binding;DNA binding

5.4e-04

54.29

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Query:  HPCKKICDITGYEAPYYDPRTTLRYANADIFKVIR
        +P K +C ITG  A Y DP+T L YA  D FK IR
Subjt:  HPCKKICDITGYEAPYYDPRTTLRYANADIFKVIR

AT4G38495.1 CONTAINS InterPro DOMAIN/s: YL1 nuclear, C-terminal (InterPro:IPR013272); Has 279 Blast hits to 279 proteins in 147 species: Archae - 0; Bacteria - 0; Metazoa - 94; Fungi - 133; Plants - 35; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink).

9.2e-44

62.9

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Query:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK
        ME +++EA++V+ + L+FK+ Q YEKYPK QS  R WKHLKQILQAEN+ +  PD P YVNIESPPS  PCK++CDITGYEAPY DPRT LRYANA +F+
Subjt:  MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFK

Query:  VIRSLPNEYVQRYLAMRNAAVILR
         +RSL ++ V +YL++RNAAV+L+
Subjt:  VIRSLPNEYVQRYLAMRNAAVILR

Sequences

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CDS sequence

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ATGGAGCCTGATGTGATCGAAGCAGAGTTAGTGTTGCCGACCCACCTAAATTTCAAGCGAATTCAGATGTACGAGAAGTACCCGAAAGGCCAATCCAGAGGCAGGCACTG
GAAACATCTCAAGCAAATTCTTCAAGCCGAGAATTACCACAACTGCTCCCCTGATGAACCCAACTATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAAAA
TTTGTGACATAACAGGATATGAGGCACCATACTATGACCCCAGGACTACTCTTCGATATGCGAATGCTGATATCTTCAAGGTCATAAGGTCACTTCCTAATGAGTACGTT
CAGCGGTATTTGGCCATGAGAAATGCAGCTGTAATTTTAAGGTGA

mRNA sequence

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GGAGCTCCAAACACACTTTTAATCTCTCCGCTCCGCTCCACTGATTACAGCAGGTGGGAGGTTTTTCAGCCTGCCGTAAGGAGTATCTGTTAGGGTTCTTCTTCTATAGA
GCTTCGTTTGTCAAAAGCTTTGAATTCCACAGACATCTCAGGAATCAGAAGGAATTTAAGTGGGTATTAACAAGAATTGAAGATGGAGCCTGATGTGATCGAAGCAGAGT
TAGTGTTGCCGACCCACCTAAATTTCAAGCGAATTCAGATGTACGAGAAGTACCCGAAAGGCCAATCCAGAGGCAGGCACTGGAAACATCTCAAGCAAATTCTTCAAGCC
GAGAATTACCACAACTGCTCCCCTGATGAACCCAACTATGTTAATATTGAGTCACCTCCCTCAATGCATCCATGCAAGAAAATTTGTGACATAACAGGATATGAGGCACC
ATACTATGACCCCAGGACTACTCTTCGATATGCGAATGCTGATATCTTCAAGGTCATAAGGTCACTTCCTAATGAGTACGTTCAGCGGTATTTGGCCATGAGAAATGCAG
CTGTAATTTTAAGGTGATGATATTGCATGTCTATTAGCAAAGCTTGGCGTCTGAGTTCGCACTTACAACCCTTCAACGAATATAAACCAATGGCATTAAGTTTTCTATTT
GTCGCAGAAAATGCAGTGTGAAACTTGTTATTTATGCTTAAAATATGTATTATATGTTTTTATTTATGACTCGAGAACTTAAAGTTTCATTCTTTTAAATTCGGGGCTCC
ACTAGTCCTGCCCCTAGTGTGCCACAATGGGAGTGTGTATTAGTCTTTTTTATAATCAAATAAGC

Protein sequence

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MEPDVIEAELVLPTHLNFKRIQMYEKYPKGQSRGRHWKHLKQILQAENYHNCSPDEPNYVNIESPPSMHPCKKICDITGYEAPYYDPRTTLRYANADIFKVIRSLPNEYV
QRYLAMRNAAVILR

Sed0025018 (gene) of Chayote v1 genome