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Sed0025034 (gene) of Chayote v1 genome

Gene IDSed0025034
OrganismSechium edule (Chayote v1)
DescriptionUbiquitin-like protein ATG12
Genome locationLG06:317551..320229
RNA-Seq ExpressionSed0025034
SyntenySed0025034
Gene Ontology termsGO:0000045 - autophagosome assembly (biological process)
GO:0000422 - autophagy of mitochondrion (biological process)
GO:0006501 - C-terminal protein lipidation (biological process)
GO:0044804 - autophagy of nucleus (biological process)
GO:0034045 - phagophore assembly site membrane (cellular component)
GO:0034274 - Atg12-Atg5-Atg16 complex (cellular component)
InterPro domainsIPR007242 - Ubiquitin-like protein Atg12
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004151012.1 ubiquitin-like protein ATG12 [Cucumis sativus]1.4e-4193.68Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STE SSSA KVVVLLRATGD PILKQTKFKMPGTDKFIKVID IRRSIQRDTLFVFVN AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_008464001.1 PREDICTED: ubiquitin-like protein ATG12 [Cucumis melo]3.1e-4192.63Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STE S+SA KVVVLLRATGD PILKQTKFKMPGTDKFIKVID IRRSIQRDTLFVFVN AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_022153405.1 ubiquitin-like protein ATG12 [Momordica charantia]2.9e-3990.53Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS E SSS  KVVVLLRATGD PILKQTKFKMPGTDKFIKVID IRRSIQRDTLFVFVN AFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_022955552.1 ubiquitin-like protein ATG12 [Cucurbita moschata]7.5e-4090.53Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS E SSSA KVVVLLR+ GD PILKQ KFKMPGTDKFIKVID IRRSIQRDTLFVFVN AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

XP_038878493.1 ubiquitin-like protein ATG12 [Benincasa hispida]4.7e-4294.74Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MASTE SSSA KVVVLLRATGD PILKQTKFKMPGTDKFIKVID IRRSIQRDTLFVFVN AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

TrEMBL top hitse value%identityAlignment
A0A0A0LIA6 Ubiquitin-like protein ATG126.7e-4293.68Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STE SSSA KVVVLLRATGD PILKQTKFKMPGTDKFIKVID IRRSIQRDTLFVFVN AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A1S3CKI1 Ubiquitin-like protein ATG121.5e-4192.63Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        M STE S+SA KVVVLLRATGD PILKQTKFKMPGTDKFIKVID IRRSIQRDTLFVFVN AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1DGR5 Ubiquitin-like protein ATG121.4e-3990.53Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS E SSS  KVVVLLRATGD PILKQTKFKMPGTDKFIKVID IRRSIQRDTLFVFVN AFSPGPDETV DLY+NFGIDGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1GTZ1 Ubiquitin-like protein ATG123.6e-4090.53Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS E SSSA KVVVLLR+ GD PILKQ KFKMPGTDKFIKVID IRRSIQRDTLFVFVN AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

A0A6J1J054 Ubiquitin-like protein ATG121.8e-3988.42Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MAS E S+S+ KVVVLLR+ GD PILKQ KFKMPGTDKFIKVID IRRSIQRDTLFVFVN AFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

SwissProt top hitse value%identityAlignment
A2YAG8 Ubiquitin-like protein ATG121.1e-2867.86Show/hide
Query:  KVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        KVVV  R+TG+ P LKQ+KFK+ G +KF+K+ID +RR I +DT+F++VN AFSP PDE +IDLYNNFGIDG+LVVNYA SMAWG
Subjt:  KVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q1SF86 Ubiquitin-like protein ATG129.9e-3573.68Show/hide
Query:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        MA+ E  +S  KVVV LRATGD PILKQ+KFK+ GTDKF KVID +RR + R++LFV+VN AFSP PDE VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q69NP0 Ubiquitin-like protein ATG121.1e-2867.86Show/hide
Query:  KVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        KVVV  R+TG+ P LKQ+KFK+ G +KF+K+ID +RR I +DT+F++VN AFSP PDE +IDLYNNFGIDG+LVVNYA SMAWG
Subjt:  KVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q8S924 Ubiquitin-like protein ATG12A8.4e-3477.27Show/hide
Query:  SSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        SS  KVVV LRATG  PILKQ+KFK+PGTDKF KVID +RR +  D+LFV+VN AFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  SSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Q9LVK3 Ubiquitin-like protein ATG12B2.1e-3269.89Show/hide
Query:  STEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TE  +S  K+VV LRATG  PILKQ+KFK+ G+DKF  VID +RR +  D+LFV+VN AFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

Arabidopsis top hitse value%identityAlignment
AT1G54210.1 Ubiquitin-like superfamily protein6.0e-3577.27Show/hide
Query:  SSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        SS  KVVV LRATG  PILKQ+KFK+PGTDKF KVID +RR +  D+LFV+VN AFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  SSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

AT1G54210.2 Ubiquitin-like superfamily protein2.1e-0842.05Show/hide
Query:  SSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        SS  KVVV LRATG  PILKQ+KFK                                            NFG DGKLVVNYACSMAWG
Subjt:  SSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG

AT3G13970.1 Ubiquitin-like superfamily protein1.5e-3369.89Show/hide
Query:  STEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG
        +TE  +S  K+VV LRATG  PILKQ+KFK+ G+DKF  VID +RR +  D+LFV+VN AFSP PDE+VIDLYNNFG DGKLVVNYACSMAWG
Subjt:  STEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAACGGAGTTCTCGAGTTCTGCTCCAAAAGTGGTTGTTCTGTTGAGAGCCACTGGGGATGTTCCCATTCTTAAACAAACCAAGTTTAAGATGCCTGGAACAGA
CAAATTTATTAAAGTTATCGATTGCATACGACGGTCAATTCAACGAGACACCCTGTTTGTGTTTGTCAACGGTGCATTCTCACCAGGCCCTGATGAGACCGTTATTGATC
TCTATAATAACTTTGGAATTGACGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAA
mRNA sequenceShow/hide mRNA sequence
CCCATTTAAATTCACACGTGAACCATACAAAAGTGCCCAAACAAAAGAGTTGGAGACAGGGGGTAGCAGTTCCTGCAGTCCACGGCGGTGCAAAACGATGGCTTCAACGG
AGTTCTCGAGTTCTGCTCCAAAAGTGGTTGTTCTGTTGAGAGCCACTGGGGATGTTCCCATTCTTAAACAAACCAAGTTTAAGATGCCTGGAACAGACAAATTTATTAAA
GTTATCGATTGCATACGACGGTCAATTCAACGAGACACCCTGTTTGTGTTTGTCAACGGTGCATTCTCACCAGGCCCTGATGAGACCGTTATTGATCTCTATAATAACTT
TGGAATTGACGGGAAGTTGGTGGTAAATTATGCCTGCTCCATGGCTTGGGGCTAATATGCAGTGTGGTATTAATGGTTAGTACTGAGGCTGTAAATAGCAAATTGAACAG
TTCATTCAAGTGCTGGACTTTTTAGGAAACTTGACACATTGACAATGAAACTTTGAAGGATGAGCTTCAAATTATTCTTTATGGAAATAGTACTGATGGAGATGAGATTT
TTATCTTGCAAAAATGATGTTTTGTATCAATATTGATTGAAAAAATCAAGTAGTTACGTATGTAAAGGCAG
Protein sequenceShow/hide protein sequence
MASTEFSSSAPKVVVLLRATGDVPILKQTKFKMPGTDKFIKVIDCIRRSIQRDTLFVFVNGAFSPGPDETVIDLYNNFGIDGKLVVNYACSMAWG