; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0025065 (gene) of Chayote v1 genome

Gene IDSed0025065
OrganismSechium edule (Chayote v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationLG05:8869617..8873348
RNA-Seq ExpressionSed0025065
SyntenySed0025065
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038009.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.2e-2350.82Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        ++KSL NKIY+KE  FG++MD SK LE+N+N F KI VDL N  EK+  ENQA+ILLNSLP+ ++E K+ IKYG + LT+  V D+L++RN ++K E+KD
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSVKSKSSKSQSSKSGKTS
         E L  + +S K +     K+S
Subjt:  FETLSVKSKSSKSQSSKSGKTS

KAA0050070.1 putative polyprotein [Cucumis melo var. makuwa]7.3e-2451.47Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        M KSLSNKIY+KE  FG++MD SKGLE+N++ F KI VDL N  EK+  ENQAVILLNSLP+ ++E K+ IKYG + L +  +LD+L++RN E+K E+KD
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELKEQK
         E L  + +S K    KS K   +S++ K + K +K
Subjt:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELKEQK

KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]3.6e-2351.88Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        ++KSL NKIY+KE  FG++MD SK LE+N++ F KI VDL N  EK+  ENQAVILLNSLP+ ++E K+ IKYG + LT+  VLD+L++RN E+K E+KD
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK
         E L  + +S K +S K  + S +S  K K  K
Subjt:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK

TYK10877.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.6e-2351.13Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        ++KSL NKIY+KE  FG++MD SK LE+N+  F KI VDL N  EK+  ENQAVILLNSLP+ ++E K+ IKYG + LT+  VLD+L++RN E+K E+KD
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK
         E L  + +S K +S K  + + +S  K+K  K
Subjt:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK

TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]2.8e-2351.88Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        ++KSL NKIY+KE  FG++MD SK LE+N++ F KI VDL N  EK+  ENQAVILLNSLP+ ++E K+ IKYG + LT+  VLD+L++RN E+K E+KD
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK
         E L  + +S K +S K  + S +S  K K  K
Subjt:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK

TrEMBL top hitse value%identityAlignment
A0A5A7U459 Putative polyprotein3.6e-2451.47Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        M KSLSNKIY+KE  FG++MD SKGLE+N++ F KI VDL N  EK+  ENQAVILLNSLP+ ++E K+ IKYG + L +  +LD+L++RN E+K E+KD
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELKEQK
         E L  + +S K    KS K   +S++ K + K +K
Subjt:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELKEQK

A0A5A7UB25 Putative gag-pol polyprotein1.8e-2351.88Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        ++KSL NKIY+KE  FG++MD SK LE+N++ F KI VDL N  EK+  ENQAVILLNSLP+ ++E K+ IKYG + LT+  VLD+L++RN E+K E+KD
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK
         E L  + +S K +S K  + S +S  K K  K
Subjt:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK

A0A5D3BRB2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-2350.82Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        ++KSL NKIY+KE  FG++MD SK LE+N+N F KI VDL N  EK+  ENQA+ILLNSLP+ ++E K+ IKYG + LT+  V D+L++RN ++K E+KD
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSVKSKSSKSQSSKSGKTS
         E L  + +S K +     K+S
Subjt:  FETLSVKSKSSKSQSSKSGKTS

A0A5D3CFX6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.8e-2351.13Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        ++KSL NKIY+KE  FG++MD SK LE+N+  F KI VDL N  EK+  ENQAVILLNSLP+ ++E K+ IKYG + LT+  VLD+L++RN E+K E+KD
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK
         E L  + +S K +S K  + + +S  K+K  K
Subjt:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK

A0A5D3DNU1 Putative gag-pol polyprotein1.3e-2351.88Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        ++KSL NKIY+KE  FG++MD SK LE+N++ F KI VDL N  EK+  ENQAVILLNSLP+ ++E K+ IKYG + LT+  VLD+L++RN E+K E+KD
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK
         E L  + +S K +S K  + S +S  K K  K
Subjt:  FETLSVKSKSSKSQSSKSGKTSLKSAKKKKELK

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.5e-0627.27Show/hide
Query:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD
        MSK+L+NK+Y+K+ L+   M        ++N FN +   LAN   K++ E++A++LLNSLP  +    + I +G   + L  V  +L       K  +  
Subjt:  MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKD

Query:  FETLSV--KSKSSKSQSSKSGKTSLKSAKKKK
         + L    + +S +  S+  G++  +   K +
Subjt:  FETLSV--KSKSSKSQSSKSGKTSLKSAKKKK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAGTCATTATCTAATAAGATATATATGAAGGAGTTACTATTTGGATTTAGGATGGATTCGTCCAAGGGTTTGGAGGACAACATAAATGCTTTCAACAAAATTTG
TGTAGATTTGGCAAACACTAGAGAGAAGCTTGATTATGAGAATCAAGCAGTAATTCTTCTCAATTCATTACCCGACAAGTTCAAGGAGCCGAAATCAGTGATTAAGTATG
GCAATGAGAAATTGACACTGGACAAAGTTCTTGACTCGCTTCGTTCTAGGAATTTCGAGATGAAAACAGAGAAGAAGGATTTTGAGACTCTTTCTGTGAAGAGTAAATCT
TCAAAAAGTCAGAGTAGTAAGTCAGGAAAAACCAGCTTGAAATCTGCAAAGAAGAAGAAAGAGCTGAAAGAGCAGAAAAAAAAAGTTTTACCTGGAATTACTATAAAGGT
AAGGGACATATTAAGTTTAATTGTCCCATTTTGA
mRNA sequenceShow/hide mRNA sequence
TTCATATCTATATGCATTTTGTTCTTGGATTAGATATAGATCCGGAAAATTGCATTACATTTTGGTATCAGGGCTTTCACTTGGCTTAGTTTCTATTGCGTTTTGATTTT
GAACCAATTTGTGAATCTGATCTAGAAATTCTCAGTCTCAGTCGTGTTGATTTCCTATTGTAAGTCCGATTGGAACCTATTTTTTGTAGATTTGTTGTCTTCTCAGTCGA
GATCTATGGCCACTTAAAATTGGAGCATTGTTTTGGTCGATCAGCATCAGGATTTCGATTTTGGACGTGATTTCATTTTGAATTGAAGCAAACGAAGTCACATTTGGAGG
TTGATTCTTGAAGATACTCGAAATCGCTCCTGCTTTTGTAAGTGCATAAGTTCAATTTGCTATAATACCTTCGTAATTTTGGTGAATCAGCAGCTTGGTTGAGATCAATC
AACAATTCTTGATTTCCGTTGCAACTTTGGTGAGTTGGCTACTGAAATTGAGTGAAATATCTGAAATCGATATCAATTTTCAATCGATTTCTAATTTATTTGAGTGGATT
TTGGAGGAATCGGAAACTTCTACTAATTTCAACCATTGTTCTTCATTGAACATCATATAATCGGTCATTCTTGAGATCTACTTGTAATATGAGATGTTCTTAGAGTGGGT
ACTCATTTCTTCTCAAGAGAATTGCAAAATAGTGTTATGTAGCAAGTAAATCAATTGAAATTTGGGGCAGTGACAATGATTTTAACATCGTCGATTTGGGTAATTTTGGC
TACTACTTGCAATTTGAACATGGAAGAGAGAGAATCGATCACGTCTTCTCTTTTTCCTTTCTGATTCAACATCTTCTGGTTTAAAATCAATGTCACTGCCCCAAATTTCA
ATTAAAATTCTGATTCTGATTCTGATCAACATTTAAAATCGGCAATTATTGTTGAATTTTTTGGTATCTTTGGACAAGATTGGCATGGTCATTAGCTGGTTGATTTGCAA
CTCATTCTGAAGGTTTCACAATTTTGTGAAATTAATTTCATCAATACAACAGTGAGCTGATTTTATGAGATTATTGTTGACTACACTGAAGTTTCCTTTTTGTGAAGATT
TAACTGTTTTGGTATGATGCTGATTCTTATGATATTATAGCCAGATTTTTTATTTTTTATTCTAATAAATCGGTTGAATTTTGATTGACTTGAGATATTGACTGGGAGTT
TTGATATTATGAGAACTGATTCTGTGAAAACTGCTTTGAGAATTGTCTAGGAAATTTTGATTTGTTGGAACTGATTGTTTTCTGTGTTGAGGCTAGCAATCCTCTGAATA
AACTACTTTCCTGATTTTTTATCGATCTTCAAATATGTCGGTAAAGTTTGTGATTGATAAATTTGACGAGAAAGGTAATTTCAGTTTGTGGAAGAGGAAAATGAAAGCCT
TATTGGTGCAGCAGAAGGTTGCAAAAGCTTTGGACAACCCTCCTAAATGGTCAGCTACCATGACAGGAGAAGAGAAATTAGAGTCATGCAGATTGCCAATAGCATGATAA
CTCTGCATTTGGCCAATAATGTCTTGAGAAGGCTAAGCGAGATTGATGATTTGACTGTTCTGTGGGCCATGTAAGAAGATTTTTACATGTCAAAGTCATTATCTAATAAG
ATATATATGAAGGAGTTACTATTTGGATTTAGGATGGATTCGTCCAAGGGTTTGGAGGACAACATAAATGCTTTCAACAAAATTTGTGTAGATTTGGCAAACACTAGAGA
GAAGCTTGATTATGAGAATCAAGCAGTAATTCTTCTCAATTCATTACCCGACAAGTTCAAGGAGCCGAAATCAGTGATTAAGTATGGCAATGAGAAATTGACACTGGACA
AAGTTCTTGACTCGCTTCGTTCTAGGAATTTCGAGATGAAAACAGAGAAGAAGGATTTTGAGACTCTTTCTGTGAAGAGTAAATCTTCAAAAAGTCAGAGTAGTAAGTCA
GGAAAAACCAGCTTGAAATCTGCAAAGAAGAAGAAAGAGCTGAAAGAGCAGAAAAAAAAAGTTTTACCTGGAATTACTATAAAGGTAAGGGACATATTAAGTTTAATTGT
CCCATTTTGAAAAGGATGGGTAAGCTCCATGTCAAGAAGCCTAAAGCTGTCCATATCCTTGATGGTTATGATTCAACCGAGGTGCTTATGGCTGGAAATTCTAAAGACCG
TTATGAGAGTCAATGGATAATGGATTATTGTTGCACTTTTCATATATCCCCTTATAAGCAACATTTTGAGAATTGTAAGGAAATTGAGACAGGCAAGGTCACTTTAGGAA
ATAGCCAACAATGTGAGGTTAGAGGCATTGACTCTGTTCGATTCAGCATGGATGACGGTTCAGTCAAAGTGCTATCTGACGTTCGATACGTGCTAGGTCTAAGACGTAAT
CTCATCTCCTTAGGGACCTTTGATGCTGCTGGTTATGACTAAAAATCTCGTCTTGGTTTGTTGATGATTTGTAAAAACAACAAAGTTAAGAGGACTGGAAAGCTTGTGAA
AGGACTGTATGTTCTTCAAGGTTGAGCTATTTAGGGCGGGTCCATGTAGTCTCTGATTCCAATTTGAAGGCTTCAAAATTATGGCATAATCGGTTGACTCACATTAGTCA
TAAAGGACTTGATTTCTTATCTAAGTAAGGACTTTTGGGAATTCTGAAGCCAACAACAATCGAGAATTGTGAACATTGCATCTTAGGCAAGTCCACCAGGTTGAGTTTTA
GATAAATCAGAGGGGATATTAGATTATATCCATTCTGATCTTTGGGAACTAGCACGGGTCCAAACACATGGTGAAGCTTGGAATTAGAAATATGGGTAGCATCGCATTCA
AAGGACAAGCGGAAGGTTAAAATGAGCATTCAGACCCTTTAGAGGTTGCAAACCTGAAAATCTCCCAAATAATATTTGCGAAGGACAAATACCTGTTGCAAAATAGATCA
GATGCAAGAGCCTTAATAAGGAAAGAATCGGATGTCGAGCTAATGCCAACTATCAGATTGCAGAATAGACAAAATGCAATAATCATGGGATTCATCCCTTAATCAGCAAA
GATGTGATTGACAAAATCAGAGGAAATATGTCGTAAGAATCAAGGGATATGCAATAAAAGGAAATAAAAGTCCAATTCAAATCCTTGCCTTCCAAGTCGATTTCTTAGTC
CCCAAGCATTTCAAGCCTATAAAAAGGAGAAGAACCAAGAGTGAAAGTGTGTTGTTTTCGGAGTTTTTCTCCCACACCTCGGATGAAGTTTTCGAAGCGAAGTTCGTGTT
CCTATTGACACGAAGGCCTGTTCTTCAAGCAGTCGCCACCATTTACCGCTTTCTAGTTTATCTTTTATTTGTTTATTTTATGTTTTCTTTATTTTCATTACCATTGTTTC
CCTTTCGA
Protein sequenceShow/hide protein sequence
MSKSLSNKIYMKELLFGFRMDSSKGLEDNINAFNKICVDLANTREKLDYENQAVILLNSLPDKFKEPKSVIKYGNEKLTLDKVLDSLRSRNFEMKTEKKDFETLSVKSKS
SKSQSSKSGKTSLKSAKKKKELKEQKKKVLPGITIKVRDILSLIVPF