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Sed0025070 (gene) of Chayote v1 genome

Gene IDSed0025070
OrganismSechium edule (Chayote v1)
DescriptionRNA ligase/cyclic nucleotide phosphodiesterase
Genome locationLG11:33790629..33791913
RNA-Seq ExpressionSed0025070
SyntenySed0025070
Gene Ontology termsNA
InterPro domainsIPR009097 - Cyclic phosphodiesterase


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004142350.1 uncharacterized protein LOC101208638 [Cucumis sativus]4.3e-9295.08Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVES+VKNFASKQEPL LSLSSIGS PSD+NILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        FQSQLCEAMRKEGIEIG+EYRLGSWIPHC VAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT EA
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

XP_022939795.1 uncharacterized protein LOC111445566 [Cucurbita moschata]5.1e-9395.63Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVES+VKNFASKQEPLPLSLSSIGS PSD+N+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        FQSQLCEAMRKEGIEIG+EYR GSWIPHC VAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT EA
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

XP_022989855.1 uncharacterized protein LOC111486920 [Cucurbita maxima]2.5e-9294.54Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVES+VKNFASKQEPLPLSL+SIGS P+D+NILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        FQSQLCEAMRKEGIE G+EYRLGSWIPHC VAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT EA
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

XP_022993671.1 uncharacterized protein LOC111489594 [Cucurbita maxima]8.7e-9395.63Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVES+VKNFASKQEPLPLSLSSIGS PSD+N+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        FQSQLCEAMRKEGIEIG+EYR GSWIPHC VAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT EA
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

XP_038890563.1 uncharacterized protein LOC120080080 [Benincasa hispida]5.1e-9395.63Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVES+VKNFASKQEPLPLSLSSIGS PSDSNILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        FQSQLC+AMRKEGIEIG+EYRLGSWIPHC VAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT EA
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

TrEMBL top hitse value%identityAlignment
A0A0A0KVB2 Uncharacterized protein2.1e-9295.08Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVES+VKNFASKQEPL LSLSSIGS PSD+NILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        FQSQLCEAMRKEGIEIG+EYRLGSWIPHC VAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT EA
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

A0A5A7T7Y4 RNA ligase/cyclic nucleotide phosphodiesterase2.1e-9295.08Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS+PFLEPTKVES+VKNFASKQEPL LSLSSIGS PSD+NILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        FQSQLCEAMRKEGIEIG+EYRLGSWIPHC VAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT EA
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

A0A6J1FNR7 uncharacterized protein LOC1114455662.5e-9395.63Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVES+VKNFASKQEPLPLSLSSIGS PSD+N+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        FQSQLCEAMRKEGIEIG+EYR GSWIPHC VAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT EA
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

A0A6J1JNI6 uncharacterized protein LOC1114869201.2e-9294.54Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVES+VKNFASKQEPLPLSL+SIGS P+D+NILFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        FQSQLCEAMRKEGIE G+EYRLGSWIPHC VAQEVP+ARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT EA
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

A0A6J1JWZ6 uncharacterized protein LOC1114895944.2e-9395.63Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVES+VKNFASKQEPLPLSLSSIGS PSD+N+LFLGPAPSISLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        FQSQLCEAMRKEGIEIG+EYR GSWIPHC VAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNT EA
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT3G28140.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein8.4e-7069.57Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLL
        MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++ TK+E ++K+F+SKQEP+ LS SSIGSF SD N LFL P PS+SL+
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLL

Query:  QFQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
        Q Q QLCE ++KEG EIG+EYR+ SW+P C VA +VP++R++E F VLRDLKL V GYA+DIGLVEFSPVRE+FSF LGN  E+
Subjt:  QFQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA

AT3G28140.2 RNA ligase/cyclic nucleotide phosphodiesterase family protein1.9e-5365.36Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLL
        MSQG+AIELYFDPALENQVLKAWNV ARRQIST LI  ESRPHITLFS +  ++ TK+E ++K+F+SKQEP+ LS SSIGSF SD N LFL P PS+SL+
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFS-SPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLL

Query:  QFQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKL
        Q Q QLCE ++KEG EIG+EYR+ SW+P C VA +VP++R++E F V     L
Subjt:  QFQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKL

AT5G40190.1 RNA ligase/cyclic nucleotide phosphodiesterase family protein8.7e-7570.49Show/hide
Query:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ
        MS+G+AIELYFDPALENQVLKAWNV ARRQIST+LI  ESRPHITLFS+ F + T++ESV+KNF SKQEP+ +S S+IGSF SD+N+LFL P PS+SLLQ
Subjt:  MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQ

Query:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA
         Q+QLC+ ++KE ++IG+EYR+ SW+P C VA +VP++RMAEAF VLRDLKLPV+GY ++IGLVEFSPVRE+FSF LGNT E+
Subjt:  FQSQLCEAMRKEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCAGCACTTGAAAATCAAGTTCTCAAGGCTTGGAATGTTCTAGCTCGCCGTCAGATTAGTACCCAACTCATCGA
AATCGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTCGAACCCACAAAAGTTGAATCCGTCGTTAAGAATTTCGCTTCCAAACAGGAACCCTTGCCTTTGT
CTTTGTCATCAATTGGCAGCTTTCCCAGTGACAGCAACATTCTCTTTCTGGGTCCAGCGCCTTCGATTTCACTCCTCCAATTCCAGTCCCAATTGTGTGAAGCAATGAGG
AAAGAAGGAATCGAAATCGGGGACGAATATCGGCTCGGTTCGTGGATTCCCCATTGCGATGTTGCTCAGGAGGTGCCTCGGGCTCGAATGGCAGAGGCATTTTGTGTTCT
GAGGGATTTGAAGCTTCCTGTTTCCGGGTATGCAATTGATATTGGGTTGGTTGAATTTTCCCCTGTTAGAGAGCTGTTCTCTTTTGTTCTTGGTAACACTAATGAAGCTT
AA
mRNA sequenceShow/hide mRNA sequence
ATGGAATTGGGCCGACCAAACGAATTACAAGTTCGACGCCGGTTGGCTCGGTGGTTTAATCGGACCGGCCGATGCCCCTTCTCTTCACTTTACCTTTCATCTCTGTGTAC
ACTTGATCTGGGTTCGGCTCTTCCCTCAATCTCTTGCAGAGCCTTTCCTTTGATCTCTCTTTCCATTTTTCACTTCACAGTTTTAGGATCCTTTGTTCTTCATCCCCTTT
CACCAACCTTCACCAACTCTTCTCTTCAAATTCGTAATTTTTAATTTCTTTTTTGACCTCTTTCTCGCATTTTGTACGTTTTTTAGCATCTGGGTCCATCGATTTCTTCT
GGGTTTTTCCTGTTTTCGTCTGTTTTTGTGTTTCATCTCTAGAGTTTTGAACTACCCATTTCATATAGTTCAAATTGACATCTGGGTTTTGTTTATTTCTCCCTATTTTT
CACTAATTTAGTTTGGGGGTTTTGAGTTTTGAGGCGATGTCACAAGGCTTTGCGATCGAGCTCTATTTCGATCCAGCACTTGAAAATCAAGTTCTCAAGGCTTGGAATGT
TCTAGCTCGCCGTCAGATTAGTACCCAACTCATCGAAATCGAATCACGCCCTCACATTACCCTCTTCTCCAGCCCTTTTCTCGAACCCACAAAAGTTGAATCCGTCGTTA
AGAATTTCGCTTCCAAACAGGAACCCTTGCCTTTGTCTTTGTCATCAATTGGCAGCTTTCCCAGTGACAGCAACATTCTCTTTCTGGGTCCAGCGCCTTCGATTTCACTC
CTCCAATTCCAGTCCCAATTGTGTGAAGCAATGAGGAAAGAAGGAATCGAAATCGGGGACGAATATCGGCTCGGTTCGTGGATTCCCCATTGCGATGTTGCTCAGGAGGT
GCCTCGGGCTCGAATGGCAGAGGCATTTTGTGTTCTGAGGGATTTGAAGCTTCCTGTTTCCGGGTATGCAATTGATATTGGGTTGGTTGAATTTTCCCCTGTTAGAGAGC
TGTTCTCTTTTGTTCTTGGTAACACTAATGAAGCTTAAAGCTTTTGATTGACACCCATTGTTGTGCTTTAATCTGATTGTTCTTACCTATGAATTTGTACAATTTATTGT
AGCTGTTTTAGAGGTTCTATTTAGACGCTAGAGCATTACAAATAAGGATGTGTTTTGTATTTTATGTTATGAATTTGATCATTTCTTTATATTGAAGTTGAATCTTACTT
GCTATTTGCTAATGTGTTTCATAAACACATTTGATTTGGGGAAAATGGCTTCTAGGTTGGTTCACTTAGTGAGGG
Protein sequenceShow/hide protein sequence
MSQGFAIELYFDPALENQVLKAWNVLARRQISTQLIEIESRPHITLFSSPFLEPTKVESVVKNFASKQEPLPLSLSSIGSFPSDSNILFLGPAPSISLLQFQSQLCEAMR
KEGIEIGDEYRLGSWIPHCDVAQEVPRARMAEAFCVLRDLKLPVSGYAIDIGLVEFSPVRELFSFVLGNTNEA