CuGenDBv2

Gene ID	Sed0025072
Organism	Sechium edule (Chayote v1)
Description	Transcription initiation factor IIF subunit beta
Genome location	LG03:264684..267066
RNA-Seq Expression	Sed0025072
Synteny	Sed0025072
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0005674 - transcription factor TFIIF complex (cellular component)
InterPro domains	IPR003196 - Transcription initiation factor IIF, beta subunit IPR036388 - Winged helix-like DNA-binding domain superfamily IPR036390 - Winged helix DNA-binding domain superfamily IPR040450 - TFIIF beta subunit, HTH domain

Homology

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GenBank top hits

e value

%identity

Alignment

XP_004143805.1 general transcription factor IIF subunit 2 isoform X3 [Cucumis sativus]

3.1e-58

55.31

Show/hide

Query:  MAVHDKSIDRCSSRKLQSDNN-IAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFS
        M V  KSIDR +SRK Q++NN I VGT+FLETNKAD  M L K PQ V+ A              +I  V  L            FTMEL  +DS  A  
Subjt:  MAVHDKSIDRCSSRKLQSDNN-IAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFS

Query:  AYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS-
        +YSLNMST F PMSVFS+S+QGK T+EGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP MDV       KKK   + S 
Subjt:  AYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS-

Query:  -RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE
         +R+RK+ GELE IIF+LFE QPYWT KQLIQ TDQPEQYM+EILK LCV   KGV  +  YELKPE++  +E
Subjt:  -RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE

XP_008465665.1 PREDICTED: general transcription factor IIF subunit 2 isoform X2 [Cucumis melo]

4.1e-58

55.31

Show/hide

Query:  MAVHDKSIDRCSSRKLQ-SDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFS
        M V  KSIDR +SRK Q ++NNI VGT+FLETNKAD  M L K PQ V+ A              +I  V  L            FTMEL  +DS  A  
Subjt:  MAVHDKSIDRCSSRKLQ-SDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFS

Query:  AYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS-
        +Y+LNMST F PMSVFS+S+QGK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP MDV       KKK   + S 
Subjt:  AYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS-

Query:  -RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE
         +R+RK+ GELE IIF+LFE QPYWT KQLIQ TDQPEQYM+EILK LCV   KGV  +  YELKPE++  +E
Subjt:  -RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE

XP_022133483.1 general transcription factor IIF subunit 2-like [Momordica charantia]

2.8e-59

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Query:  MAVHDKSIDRCSSRKLQSDNN--IAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAF
        M V DK IDRCSSRKLQ++NN     GT+FLETNKAD  M L K PQ V+ A              +I  V  L            FTMEL G+DS  + 
Subjt:  MAVHDKSIDRCSSRKLQSDNN--IAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAF

Query:  SAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS
         +YSLNMST F PMSVFS+S  GK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP MDV       KKK   + S
Subjt:  SAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS

Query:  --RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEF-QGGNE
          +R+RK+ GELE IIFRLFE QPYWT KQLIQ TDQPEQYM+EILK LCV   KGV  +  YELKPE+ + G+E
Subjt:  --RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEF-QGGNE

XP_022964851.1 general transcription factor IIF subunit 2-like [Cucurbita moschata]

2.7e-57

56.44

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Query:  DKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFSAYSLN
        DK IDR SSRKL S+++ A GT+FLETNKAD  M L K PQ V+ A              +I  V  L            FTMEL  +DS  A  AYSLN
Subjt:  DKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFSAYSLN

Query:  MSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS--RRVR
        MST F PMSVFS+S QGK TVEGKIL KFDMKP  QN   YGKL RER  K  T+ R+ +VIDHV   HM PMP MDV       KKK   + S  +R+R
Subjt:  MSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS--RRVR

Query:  KDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ
        K+ GELE IIFRLFE QPYWT KQLIQ TDQPEQYM+EILK LCV   KGV  +  YELKPE++
Subjt:  KDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ

XP_038889594.1 general transcription factor IIF subunit 2-like [Benincasa hispida]

1.2e-60

56.62

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Query:  MAVHDKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFSA
        M V  KSIDRCSSRKLQ +NN  VGT+FLETNKAD  M L K PQ V+ A              +I  V  L            FTMEL G+DS     +
Subjt:  MAVHDKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFSA

Query:  YSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS--
        YSLNMST F PMSVFS+S+QGK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP MDV       KKK   + S  
Subjt:  YSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS--

Query:  RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE
        +R+RK+ GELE IIFRLFE Q YWT KQLIQ TDQPEQYM+EILK LCV   KGV  +  YELKPE++   E
Subjt:  RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CPB8 Transcription initiation factor IIF subunit beta

2.0e-58

55.31

Show/hide

Query:  MAVHDKSIDRCSSRKLQ-SDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFS
        M V  KSIDR +SRK Q ++NNI VGT+FLETNKAD  M L K PQ V+ A              +I  V  L            FTMEL  +DS  A  
Subjt:  MAVHDKSIDRCSSRKLQ-SDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFS

Query:  AYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS-
        +Y+LNMST F PMSVFS+S+QGK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP MDV       KKK   + S 
Subjt:  AYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS-

Query:  -RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE
         +R+RK+ GELE IIF+LFE QPYWT KQLIQ TDQPEQYM+EILK LCV   KGV  +  YELKPE++  +E
Subjt:  -RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE

A0A1S3CPE2 Transcription initiation factor IIF subunit beta

1.9e-56

54.12

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Query:  MAVHDKSIDRCSSRKLQ-SDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFS
        M V  KSIDR +SRK Q ++NNI VGT+FLETNKAD  M L K PQ V+ A              +I  V  L            FTMEL  +DS  A  
Subjt:  MAVHDKSIDRCSSRKLQ-SDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFS

Query:  AYSLNMSTYFYPMSVFSDSTQ------GKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKA
        +Y+LNMST F PMSVFS+S+Q      GK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP MDV       KKK 
Subjt:  AYSLNMSTYFYPMSVFSDSTQ------GKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKA

Query:  TRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE
          + S  +R+RK+ GELE IIF+LFE QPYWT KQLIQ TDQPEQYM+EILK LCV   KGV  +  YELKPE++  +E
Subjt:  TRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE

A0A6J1BZ89 Transcription initiation factor IIF subunit beta

1.4e-59

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Query:  MAVHDKSIDRCSSRKLQSDNN--IAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAF
        M V DK IDRCSSRKLQ++NN     GT+FLETNKAD  M L K PQ V+ A              +I  V  L            FTMEL G+DS  + 
Subjt:  MAVHDKSIDRCSSRKLQSDNN--IAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAF

Query:  SAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS
         +YSLNMST F PMSVFS+S  GK TVEGKIL KFDMKP  QN  RYGKL RER  K  T+ R+ +VIDHV   HM PMP MDV       KKK   + S
Subjt:  SAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS

Query:  --RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEF-QGGNE
          +R+RK+ GELE IIFRLFE QPYWT KQLIQ TDQPEQYM+EILK LCV   KGV  +  YELKPE+ + G+E
Subjt:  --RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEF-QGGNE

A0A6J1HK34 Transcription initiation factor IIF subunit beta

1.3e-57

56.44

Show/hide

Query:  DKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFSAYSLN
        DK IDR SSRKL S+++ A GT+FLETNKAD  M L K PQ V+ A              +I  V  L            FTMEL  +DS  A  AYSLN
Subjt:  DKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFSAYSLN

Query:  MSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS--RRVR
        MST F PMSVFS+S QGK TVEGKIL KFDMKP  QN   YGKL RER  K  T+ R+ +VIDHV   HM PMP MDV       KKK   + S  +R+R
Subjt:  MSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS--RRVR

Query:  KDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ
        K+ GELE IIFRLFE QPYWT KQLIQ TDQPEQYM+EILK LCV   KGV  +  YELKPE++
Subjt:  KDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ

A0A6J1JIQ3 Transcription initiation factor IIF subunit beta

3.7e-57

56.06

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Query:  DKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFSAYSLN
        DK IDR SSRKL S+++   GT+FLETNKAD  M L K PQ V+ A              +I  V  L            FTMEL  +DS  A  AYSLN
Subjt:  DKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAF-------------LIPRVTLL------------FTMELTGSDSEYAFSAYSLN

Query:  MSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS--RRVR
        MST F PMSVFS+S QGK TVEGKIL KFDMKP  QN   YGKL RER  K  T+ R+ +VIDHV   HM PMP MDV       KKK   + S  +R+R
Subjt:  MSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV------RKKKATRRRS--RRVR

Query:  KDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ
        K+ GELE IIFRLFE QPYWT KQLIQ TDQPEQYM+EILK LCV   KGV  +  YELKPE++
Subjt:  KDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ

SwissProt top hits

e value

%identity

Alignment

P13984 General transcription factor IIF subunit 2

2.1e-09

26.85

Show/hide

Query:  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFE
        ++VF++S+  K+++EG ++++ + +P     Y +L R +  +     R ++ +D V   +  P+   + ++  ++  +   +R R D   +  ++F  FE
Subjt:  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFE

Query:  TQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ
           Y+  K L+  T QP  Y++EILK + V   KG+ K   +ELKPE++
Subjt:  TQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ

Q01750 General transcription factor IIF subunit 2

2.8e-09

26.85

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Query:  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFE
        ++VF++S+  K+++EG ++++ + +P     Y KL R +  +     R ++  D V   +  P+   + ++  ++  +   +R R D   +  ++F  FE
Subjt:  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFE

Query:  TQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ
           Y+  K L+  T QP  Y++EILK + +   KG+ K   +ELKPE++
Subjt:  TQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ

Q2T9L9 General transcription factor IIF subunit 2

3.7e-09

26.17

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Query:  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFE
        ++VF++S+  K+++EG ++++ + +P     Y +L R +  +     R ++ +D V   +  P+   + ++  ++  +   +R R D   +  ++F  FE
Subjt:  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFE

Query:  TQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ
           Y+  K L+  T QP  Y+++ILK + V   KG+ K   +ELKPE++
Subjt:  TQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ

Q54KT7 General transcription factor IIF subunit 2

9.0e-08

27.56

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Query:  PMSVFSDSTQGKVTVEGKILKKFDMK-PQNFARYGKLYRERNRKRETERRKTKVIDH-------VPEEHMSPMPRMDVRKKKATRRRSRRVRKDSGELES
        P+ +FS+   G + +EG I  + D+K      +Y  L + R+ K  T+ R T+VID        + + +   +  + + +KK +  +  ++ +D  E+  
Subjt:  PMSVFSDSTQGKVTVEGKILKKFDMK-PQNFARYGKLYRERNRKRETERRKTKVIDH-------VPEEHMSPMPRMDVRKKKATRRRSRRVRKDSGELES

Query:  IIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ
        +IF  F  + +   K L   T+QP+ +++ IL+++C+  K+G      YELKPEF+
Subjt:  IIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ

Q8R0A0 General transcription factor IIF subunit 2

1.3e-09

26.85

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Query:  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFE
        ++VF++S+  K+++EG ++++ + +P     Y KL R +  +     R ++ +D V   +  P+   + ++  ++  +   +R R D   +  ++F  FE
Subjt:  MSVFSDSTQGKVTVEGKILKKFDMKPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMP--RMDVRKKKATRRRSRRVRKDSGELESIIFRLFE

Query:  TQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ
           Y+  K L+  T QP  Y++EILK + +   KG+ K   +ELKPE++
Subjt:  TQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ

Arabidopsis top hits

e value

%identity

Alignment

AT1G75510.1 Transcription initiation factor IIF, beta subunit

1.6e-31

43.68

Show/hide

Query:  FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRM----
        F M + G++       Y+LNM T F PM  FSD  QG    EGK+  KFDMKP  +    Y +L RER  K   + R+ +VID+    HM PMP M    
Subjt:  FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRM----

Query:  -----DVRKKKATRRRS-RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE
             + RK    ++   +R R+D GELE+I+F+LFE QP WT KQL+Q TDQP Q+++EIL  LCV  K+G   +  YELKPE++   E
Subjt:  -----DVRKKKATRRRS-RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQGGNE

AT3G52270.1 Transcription initiation factor IIF, beta subunit

2.6e-34

46.45

Show/hide

Query:  FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV--
        F MEL  +DS      Y+L+MS  F PM+VF +S+ GK++VEGKI  KFDM+P  +N   YG+L RER  K   + R+ +VID+    HM PMP M +  
Subjt:  FTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDMKP--QNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDV--

Query:  ---RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ
            KKK T R S  +R R+D  E+E ++F LFE Q  WT + LIQ TDQPEQ+++++LK LC+   KG   +  YELKPE++
Subjt:  ---RKKKATRRRS--RRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGVEKRKCYELKPEFQ

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGCCGTCCATGACAAATCCATCGACCGCTGCAGTTCAAGAAAACTCCAAAGCGATAACAACATTGCCGTCGGAACCAACTTCTTAGAGACGAACAAGGCGGACACAGA
AATGCGGCTCTTTAAATCCCCTCAACCCGTATCTGGCGCCTTTCTAATTCCCCGGGTTACCCTTCTCTTCACTATGGAATTGACTGGCTCTGACTCTGAATATGCATTTA
GCGCCTACTCGTTGAACATGTCCACATACTTCTATCCGATGTCCGTATTTTCTGACTCAACACAAGGGAAGGTTACTGTCGAAGGAAAAATACTGAAAAAATTTGACATG
AAGCCGCAGAATTTTGCGAGGTACGGGAAACTGTATCGGGAAAGAAATCGCAAGCGTGAGACCGAGAGGAGAAAGACTAAGGTGATTGACCATGTCCCAGAAGAACATAT
GAGCCCTATGCCAAGGATGGATGTACGTAAAAAGAAAGCGACCAGGAGAAGGAGCAGGAGGGTGAGGAAGGATAGTGGTGAATTGGAGAGCATCATTTTTAGGCTCTTTG
AAACACAGCCATATTGGACATTCAAACAATTGATTCAACATACCGACCAGCCCGAACAATATATGAGAGAAATCCTTAAAAGGCTTTGTGTCTCCTGCAAAAAGGGTGTT
GAGAAAAGAAAATGTTATGAGCTGAAGCCAGAATTCCAAGGAGGAAATGAGATTGGTGTAATTTGA

mRNA sequence

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Protein sequence

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MAVHDKSIDRCSSRKLQSDNNIAVGTNFLETNKADTEMRLFKSPQPVSGAFLIPRVTLLFTMELTGSDSEYAFSAYSLNMSTYFYPMSVFSDSTQGKVTVEGKILKKFDM
KPQNFARYGKLYRERNRKRETERRKTKVIDHVPEEHMSPMPRMDVRKKKATRRRSRRVRKDSGELESIIFRLFETQPYWTFKQLIQHTDQPEQYMREILKRLCVSCKKGV
EKRKCYELKPEFQGGNEIGVI

Sed0025072 (gene) of Chayote v1 genome