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Sed0025078 (gene) of Chayote v1 genome

Gene IDSed0025078
OrganismSechium edule (Chayote v1)
Descriptionprotein RADIALIS-like 1
Genome locationLG05:35654190..35654706
RNA-Seq ExpressionSed0025078
SyntenySed0025078
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017930 - Myb domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036165.1 protein RADIALIS-like 1 [Cucumis melo var. makuwa]4.6e-1972.37Show/hide
Query:  MASMSAQAPS-EWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRR
        MASM+A  PS  WTA QNKAFEKALA +DKDTPERW NVA AIGGKT +EVK HY LLV DV  IE+  I FPYRR
Subjt:  MASMSAQAPS-EWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRR

KAE8645640.1 hypothetical protein Csa_020521 [Cucumis sativus]7.1e-2070.89Show/hide
Query:  MASMSAQAPS-EWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR
        MASM+A  PS  WT  QNKAFEKALA +DKDTPERW NVA AIGGKT +EVKSHY LLV DV  IE+  I FPYRR+ R
Subjt:  MASMSAQAPS-EWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR

XP_008447026.1 PREDICTED: protein RADIALIS-like 1 [Cucumis melo]2.1e-1966.67Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR
        MASMSA   ++WTA +NKAFEKALA +DKDTPERW NVA AIGGKT ++VK HY LL+ DV  IEN  I FPYR + R
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR

XP_022136064.1 protein RADIALIS-like 1 [Momordica charantia]7.9e-1968.92Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYR
        MASMS+   S WTA QNKAFEKALA +D+DTPERW NVA A+GGKTA+EVK HY+LLV DV  IE+  + FPYR
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYR

XP_022952660.1 protein RADIALIS-like 1 [Cucurbita moschata]2.7e-1969.23Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR
        MASMSA   S WTA +NKAFEKALA FD+DTPERW NVA AIGGKT  EVK HY LLV DV  IE+  I FPYR + R
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR

TrEMBL top hitse value%identityAlignment
A0A0A0K3K0 SANT domain-containing protein1.0e-1967.95Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR
        MASMSA   S WTA +NKAFEKALA +DKDTPERW NVA AIGGKT +EVK HY LL+ DV  IE+  I FPYR++ R
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR

A0A1S3BGF0 protein RADIALIS-like 11.0e-1966.67Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR
        MASMSA   ++WTA +NKAFEKALA +DKDTPERW NVA AIGGKT ++VK HY LL+ DV  IEN  I FPYR + R
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR

A0A5A7T3V4 Protein RADIALIS-like 12.2e-1972.37Show/hide
Query:  MASMSAQAPS-EWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRR
        MASM+A  PS  WTA QNKAFEKALA +DKDTPERW NVA AIGGKT +EVK HY LLV DV  IE+  I FPYRR
Subjt:  MASMSAQAPS-EWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRR

A0A6J1GKV1 protein RADIALIS-like 11.3e-1969.23Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR
        MASMSA   S WTA +NKAFEKALA FD+DTPERW NVA AIGGKT  EVK HY LLV DV  IE+  I FPYR + R
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR

A0A6J1I8Y0 protein RADIALIS-like 13.8e-1967.95Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR
        MASMSA   S WTA +NKAFEKALA FD+DTP+RW NVA AIGGKT  EVK HY LLV DV  IE+  I FPYR + R
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.2e-1960.81Show/hide
Query:  ASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRR
        +SMS+Q+   WTA QNKAFE+ALA +D+DTP RWQNVA  +GGKT +EVK HY+LLV D+  IEN  + FP  R
Subjt:  ASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRR

Q1A173 Protein RADIALIS-like 61.2e-1759.72Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP
        MAS S  + S WT +QNK FE+ALA +DKDTP+RW NVA A+GGKT +EVK HYD+LV D+I IE   +  P
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP

Q6NNN0 Protein RADIALIS-like 31.4e-1550.65Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRAD
        MAS S  + + WT  +NK FE+ALA +D+DTP+RW NVA A+GGK+A+EV+ HY+LL+ DV  IE+     P  R++
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRAD

Q8GW75 Protein RADIALIS-like 51.8e-1856.41Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP-YRRAD
        MAS S  + S WT+ QNK FE+ALA +DKDTP+RWQNVA A+G K+A+EVK HYD+LV D++ IE + +  P Y+  D
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP-YRRAD

Q9SIJ5 Protein RADIALIS-like 25.9e-1758.57Show/hide
Query:  SMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP
        SMS+     WT  QNKAFE+ALA +D+DTP+RW NVA A+GGKT +E K  YDLLV D+  IEN  + FP
Subjt:  SMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 51.3e-1956.41Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP-YRRAD
        MAS S  + S WT+ QNK FE+ALA +DKDTP+RWQNVA A+G K+A+EVK HYD+LV D++ IE + +  P Y+  D
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP-YRRAD

AT1G75250.1 RAD-like 68.4e-1959.72Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP
        MAS S  + S WT +QNK FE+ALA +DKDTP+RW NVA A+GGKT +EVK HYD+LV D+I IE   +  P
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP

AT1G75250.2 RAD-like 68.4e-1959.72Show/hide
Query:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP
        MAS S  + S WT +QNK FE+ALA +DKDTP+RW NVA A+GGKT +EVK HYD+LV D+I IE   +  P
Subjt:  MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP

AT2G21650.1 Homeodomain-like superfamily protein4.2e-1858.57Show/hide
Query:  SMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP
        SMS+     WT  QNKAFE+ALA +D+DTP+RW NVA A+GGKT +E K  YDLLV D+  IEN  + FP
Subjt:  SMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFP

AT4G39250.1 RAD-like 11.5e-2060.81Show/hide
Query:  ASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRR
        +SMS+Q+   WTA QNKAFE+ALA +D+DTP RWQNVA  +GGKT +EVK HY+LLV D+  IEN  + FP  R
Subjt:  ASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCAATGTCTGCTCAAGCCCCTAGTGAATGGACTGCAACACAAAACAAAGCATTTGAAAAGGCTTTGGCAGAGTTTGACAAAGACACTCCTGAAAGATGGCAGAA
TGTTGCGAACGCCATTGGTGGAAAAACTGCACAAGAAGTGAAGAGCCATTATGACCTTCTTGTGTTGGATGTTATACGTATCGAGAATGAACCGATTCTCTTCCCTTATC
GACGAGCTGACAGATAA
mRNA sequenceShow/hide mRNA sequence
AATAAACTTTCCTTTTGCTTTTACCAATGGCTTCAATGTCTGCTCAAGCCCCTAGTGAATGGACTGCAACACAAAACAAAGCATTTGAAAAGGCTTTGGCAGAGTTTGAC
AAAGACACTCCTGAAAGATGGCAGAATGTTGCGAACGCCATTGGTGGAAAAACTGCACAAGAAGTGAAGAGCCATTATGACCTTCTTGTGTTGGATGTTATACGTATCGA
GAATGAACCGATTCTCTTCCCTTATCGACGAGCTGACAGATAATATCTCTTGAGCATTGCTAAACTTTGAAGTTTTAAGTTTTCTCTCTCTTTTAATGTCTTTGAATCAG
TTATCTTACGCTAGAACCCCCGAAACTTAAGTTCTATGGCGATTATTATTTAGGTCTTTCGTTTTGGTCTTTAATACTTGGTCTTGGTCTTTTATGTTTAGGGTTTAAGT
GGGCTCCTATACATCAACTCTAACTCTCAACTGGTACCACGTGTTTAGGGTTTATGTTTAGTTCTATGGCGATTAAC
Protein sequenceShow/hide protein sequence
MASMSAQAPSEWTATQNKAFEKALAEFDKDTPERWQNVANAIGGKTAQEVKSHYDLLVLDVIRIENEPILFPYRRADR