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Sed0025098 (gene) of Chayote v1 genome

Gene IDSed0025098
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG08:6433478..6433894
RNA-Seq ExpressionSed0025098
SyntenySed0025098
Gene Ontology termsGO:0009059 - macromolecule biosynthetic process (biological process)
GO:0010467 - gene expression (biological process)
GO:0044238 - primary metabolic process (biological process)
GO:0044271 - cellular nitrogen compound biosynthetic process (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3622233.1 hypothetical protein FXO38_31400 [Capsicum annuum]1.3e-3565.67Show/hide
Query:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVH
        +   KF++EKFDGR+NFG+WQVQVKDVLIQSGLHKALK RP+   SEK + D   +E    SSK S+KS +SD+EWEE+D++AAS IRL LAKNVLANV 
Subjt:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVH

Query:  RISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL
         +ST K+ WEK E +YQ KSISNRLYLKEQF+ L
Subjt:  RISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

KAF5463231.1 hypothetical protein F2P56_019161 [Juglans regia]7.3e-3663.91Show/hide
Query:  SSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHR
        +S++++VEKFDGR+NFGLWQVQVKDVLIQSGLHKALKGRP    + + S D   T+ +        +S MSD++WE++DLRAASAIRL LAKNVLAN+H 
Subjt:  SSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHR

Query:  ISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL
        IST KK WEK E +YQ K +SNR+YLKEQF+TL
Subjt:  ISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

KAF7802225.1 cytochrome p450 [Senna tora]1.7e-3765.94Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVL
        M+ F S+VKFDVEKFDGR+NFGLWQVQVKDVLIQSGLHKAL+G+ S  DSEKS                  +SSMSD +WEE+DLRAAS IRL+LAKNVL
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVL

Query:  ANVHRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL
        ANV  IST K+ W+K E +YQAK ISN L LKEQF+TL
Subjt:  ANVHRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

KAF7810708.1 cytochrome p450 [Senna tora]5.6e-3664.49Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVL
        M+ F S++KFDVEKFDGR+NFG WQVQVKDVLIQSGL KAL+G+ S  DSEKS                  +SSMSD +WEE+DLRAAS IRL LAKNVL
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVL

Query:  ANVHRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL
        ANV  IST K+ W+K E +YQAK ISNRL LKEQF+TL
Subjt:  ANVHRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]1.5e-4980.43Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVL
        M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK S DGG  ESSGGSS+GSKKSSMS ++WEEMDLRAASAIR +LAKN+L
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVL

Query:  ANVHRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL
        ANVHRIST K+ WEK EA+YQAK ISNRLYLKEQF+TL
Subjt:  ANVHRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

TrEMBL top hitse value%identityAlignment
A0A2G2YJH4 Uncharacterized protein7.4e-3462.22Show/hide
Query:  FMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANV
        +M   KF++EKFDGR+NFGLWQVQVKDVLIQSGLHKALK RP+ G  +K S           SS+ S+KS +SD+EWEE+D++  S IRL LAK VL NV
Subjt:  FMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANV

Query:  HRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL
          +ST KK WEK E +YQ KSISNRLYLKEQF+ L
Subjt:  HRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

A0A6A2YS90 Transcription initiation factor IIA subunit 21.3e-3363.85Show/hide
Query:  KFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRIST
        +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    SS    KS MS++EWEE+D+RAAS IRL LAKNVLANV R S+
Subjt:  KFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRIST

Query:  GKKFWEKPEAMYQAKSISNRLYLKEQFYTL
         K+ WEK E MYQAKS+SNRLYLKE+F+ L
Subjt:  GKKFWEKPEAMYQAKSISNRLYLKEQFYTL

A0A6A3BK59 CCHC-type domain-containing protein5.7e-3463.64Show/hide
Query:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRI
        S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    SS    KS MS++EWEE+D+RAAS IRL LAKNVLANV R 
Subjt:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRI

Query:  STGKKFWEKPEAMYQAKSISNRLYLKEQFYTL
        S+ K+ WEK E MYQAKS+SNRLYLKE+F+ L
Subjt:  STGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

A0A6A3CWI3 CCHC-type domain-containing protein5.7e-3463.64Show/hide
Query:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRI
        S +FD+EKFDGR+NFGLWQVQVKD+LIQSGL+KALKG+P+      S  +G   +    SS    KS MS++EWEE+D+RAAS IRL LAKNVLANV R 
Subjt:  SVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRI

Query:  STGKKFWEKPEAMYQAKSISNRLYLKEQFYTL
        S+ K+ WEK E MYQAKS+SNRLYLKE+F+ L
Subjt:  STGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

A0A6J1CG82 uncharacterized protein LOC1110105217.4e-5080.43Show/hide
Query:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVL
        M+ FMS VK DVEKFDG +NFGLWQVQVKDVLIQS LHKALKGRPS G SEK S DGG  ESSGGSS+GSKKSSMS ++WEEMDLRAASAIR +LAKN+L
Subjt:  MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVL

Query:  ANVHRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL
        ANVHRIST K+ WEK EA+YQAK ISNRLYLKEQF+TL
Subjt:  ANVHRISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.1e-1735.82Show/hide
Query:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVH
        MS VK++V KF+G   F  WQ +++D+LIQ GLHK L                             K  +M  ++W ++D RAASAIRL+L+ +V+ N+ 
Subjt:  MSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVH

Query:  RISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL
           T +  W + E++Y +K+++N+LYLK+Q Y L
Subjt:  RISTGKKFWEKPEAMYQAKSISNRLYLKEQFYTL

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGACGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAATACAATCTGGATT
ACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCA
GCATGAGTGATGACGAATGGGAGGAAATGGATTTGAGGGCTGCAAGTGCCATCAGGTTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATAGAATATCAACAGGCAAA
AAGTTTTGGGAGAAGCCTGAAGCGATGTATCAAGCAAAAAGCATTTCAAATCGGTTGTATCTGAAGGAGCAATTTTACACATTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAAGCTTTATGAGTTCAGTGAAGTTTGACGTGGAGAAATTTGATGGAAGGATGAATTTTGGCTTGTGGCAAGTGCAAGTCAAAGATGTGCTAATACAATCTGGATT
ACACAAGGCTTTGAAGGGAAGACCAAGTGGTGGTGATTCTGAAAAATCAAGCGGTGATGGTGGTTCAACAGAGTCCAGTGGTGGTTCTAGCAAAGGTTCTAAGAAGTCCA
GCATGAGTGATGACGAATGGGAGGAAATGGATTTGAGGGCTGCAAGTGCCATCAGGTTAAATTTGGCTAAAAATGTTCTTGCTAATGTGCATAGAATATCAACAGGCAAA
AAGTTTTGGGAGAAGCCTGAAGCGATGTATCAAGCAAAAAGCATTTCAAATCGGTTGTATCTGAAGGAGCAATTTTACACATTGTGA
Protein sequenceShow/hide protein sequence
MASFMSSVKFDVEKFDGRMNFGLWQVQVKDVLIQSGLHKALKGRPSGGDSEKSSGDGGSTESSGGSSKGSKKSSMSDDEWEEMDLRAASAIRLNLAKNVLANVHRISTGK
KFWEKPEAMYQAKSISNRLYLKEQFYTL