CuGenDBv2

Gene ID	Sed0025165
Organism	Sechium edule (Chayote v1)
Description	DNA-directed RNA polymerase subunit beta'
Genome location	Contig00347:27614..30385
RNA-Seq Expression	Sed0025165
Synteny	Sed0025165
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009507 - chloroplast (cellular component) GO:0000287 - magnesium ion binding (molecular function) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000722 - RNA polymerase, alpha subunit IPR006592 - RNA polymerase, N-terminal IPR007080 - RNA polymerase Rpb1, domain 1 IPR034678 - DNA-directed RNA polymerase subunit RpoC1 IPR042102 - RNA polymerase Rpb1, domain 3 superfamily IPR044893 - RNA polymerase Rpb1, clamp domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AHM88680.1 RNA polymerase beta [Lagenaria siceraria]

0.0e+00

94.56

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEI CIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

QZL38672.1 RNA polymerase beta' subunit [Citrullus ecirrhosus]

0.0e+00

94.41

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEI CIYI++TVGHISLYREIEEAIQGFCRACSYGT
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

YP_009317377.1 RNA polymerase beta' subunit [Coccinia grandis]

0.0e+00

94.41

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYG YLIVKSIK EIFCIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

YP_009456137.1 RNA polymerase beta' subunit [Lagenaria siceraria]

0.0e+00

94.56

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEI CIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

YP_009945408.1 RNA polymerase beta' subunit [Sechium edule]

0.0e+00

95.4

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS

Query:  YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEI CIYIQTTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LE65 DNA-directed RNA polymerase subunit gamma

0.0e+00

94.41

Show/hide

Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEI CIYI++TVGHISLYREIEEAIQGFCRACSYGT
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

A0A2I6C061 DNA-directed RNA polymerase subunit beta'

0.0e+00

94.56

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEI CIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

A0A6H0ER08 DNA-directed RNA polymerase subunit beta'

0.0e+00

95.4

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNS

Query:  YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEI CIYIQTTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  YDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

A0A7G9IT28 DNA-directed RNA polymerase subunit beta'

0.0e+00

94.56

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEI CIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

X2F7V3 DNA-directed RNA polymerase subunit beta'

0.0e+00

94.56

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEI CIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

SwissProt top hits

e value

%identity

Alignment

B1A926 DNA-directed RNA polymerase subunit beta'

0.0e+00

90.4

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWAN+ LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDL++IIDYS +EWKELGEEGP G             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASN+GVAKSKIREKEPI+WEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC
         KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDML+GLYVLTSG RRGICANRYNP NRKN +NE+I +N  KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQKRINLDSPLWLRW+LDQRVIASREAPIEVHYESLGT+HEIYG YLIV+S+KKEI CIYI+TTVGHISLYREIEEAIQGFCRACSY T
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Q0ZJ29 DNA-directed RNA polymerase subunit beta'

0.0e+00

89.29

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIG VSPQQISAWANK LPNGEI+GEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+K+D KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQL DLDLR+IIDYSLVEWKELGEEGP G             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLH+CGLPREIAIELFQTFLIRGLIRQH ASNIGVAKS+IREKEPIVWEILQEVM+GHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKY----TKEPF
         KGFNADFDGDQMAVHVPLSLEAQ+EARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NR+N +NE+I +N Y     KEPF
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKY----TKEPF

Query:  FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        FCNSYDAIGAYR KRINL SPLWLRW+LDQR+IAS+EAPIEVHYESLGT+HEIYG YLIV+S+KKEI CIYI+TTVGHISLYREIEEAIQGFCRACSY T
Subjt:  FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Q49L07 DNA-directed RNA polymerase subunit beta'

0.0e+00

89.43

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIG VSPQQISAWA K LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIAN+LDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRG FEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLR+IIDYSLVEWKELGEE P G             FLVRRMELAKHF+RTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSL LHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKY----TKEPF
         KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNP NR+N +NE+ Y+N Y     KEPF
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKY----TKEPF

Query:  FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        FCNSYDAIGAYRQKRINLDSPLWLRWRLDQR+IASRE PIE+HYESLGT+HEIYG YLIV+S+KKEI CIYI+TTVGHISL+REIEEAIQGFCRACS+GT
Subjt:  FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Q4VZP2 DNA-directed RNA polymerase subunit beta'

0.0e+00

94.41

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNP NRKN+KNEKIYNN  KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNN--KYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYG YLIVKSIKKEI CIYI+TTVGHISLYREIEEAIQGFCRACSYGT
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Q68S15 DNA-directed RNA polymerase subunit beta'

0.0e+00

89.56

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIG VSPQQIS WANK LPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIG++KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFDTFRNREISTGAGAIREQLADLDLR+IID SLVEWKELGE+GP G             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        DGGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQP+LV+GRAICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKY----TKEPF
         KGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRRGIC NRYNP NR+N +NE+IY+N Y     KEPF
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIYNNKY----TKEPF

Query:  FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYG
        FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVI+++EAP+EVHYESLGT++EIYG YLIV+SIKKEI  IYI+TTVGHISLYREIEEAIQGFC+ACSYG
Subjt:  FCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYG

Arabidopsis top hits

e value

%identity

Alignment

AT3G57660.1 nuclear RNA polymerase A1

6.2e-17

25.87

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Query:  VLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRE
        V P + RP     G  +M         +VI  NN L +  T         V+ + + +QE+V+ L D+     Q  RD           ++E KEG FR+
Subjt:  VLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDVIEGKEGRFRE

Query:  TLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL-------------FQTFLIRGLI----RQHFASNIGVAKSKIREK--EPIVWEIL---------
         ++GKRV+++ RSVI   P ++++  G+P   A++L              +  +I G        H++      K    EK    I  ++L         
Subjt:  TLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL-------------FQTFLIRGLI----RQHFASNIGVAKSKIREK--EPIVWEIL---------

Query:  --------------QEVMQGHPVLLNRAPTLHRLGIQAFQPILVDG-RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGD
                      + +  G  VL+NR PTLH+  + A +  ++ G + + LH   C  +NADFDGD+M VH P    ++AEA  ++ ++      + G+
Subjt:  --------------QEVMQGHPVLLNRAPTLHRLGIQAFQPILVDG-RAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGD

Query:  PISVPTQDMLIGLYVLT
        P+    QD ++   +LT
Subjt:  PISVPTQDMLIGLYVLT

AT4G35800.1 RNA polymerase II large subunit

2.6e-31

24.67

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Query:  CEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYI---------------------ANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSF
        CE C     +        GY++LA P+ HV ++K + S +                     A  +  P   L+ ++   K ++    GGD I    + S 
Subjt:  CEQCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKRLPSYI---------------------ANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSF

Query:  ARPIAK----------KPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAG---AIREQLADLDLRLIIDYSLVEWKELGEEGPAGFLVRR
          P+ K          K T   ++   EY+IQ  K   P             R+ + GA    ++ ++++D D +L+                 GF  + 
Subjt:  ARPIAK----------KPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAG---AIREQLADLDLRLIIDYSLVEWKELGEEGPAGFLVRR

Query:  MELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQP-MR
              F R    P+WM+L +LP+ PP +RP + +D       D+      +I  N  L          P  ++    +L+Q  + T  DN + GQP   
Subjt:  MELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQP-MR

Query:  DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSKIREKE--
            +  KS    ++ KEGR R  L+GKRVD+S R+VI   P++++   G+P  IA+ L        +    ++ L+    H       AK  IR+    
Subjt:  DGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSKIREKE--

Query:  --------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLL
                       + +++ + +  G  VL NR P+LH++ I   +  ++      L+  V   +NADFDGD+M +HVP S E +AE   LM     ++
Subjt:  --------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLL

Query:  SSAIGDPISVPTQDMLIGLYVLT
        S     P+    QD L+G   +T
Subjt:  SSAIGDPISVPTQDMLIGLYVLT

AT5G60040.1 nuclear RNA polymerase C1

2.1e-28

28.57

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Query:  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDV
        PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  + +     VQ  V   +++ +RG Q   + H          
Subjt:  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDV

Query:  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN-----------IGVAKSKIREKEP
        ++GK GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N           +G  + +I ++  
Subjt:  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN-----------IGVAKSKIREKEP

Query:  IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM
        I   + + + +G  VL NR P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQD 
Subjt:  IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM

Query:  LIGLYVLT
        L   +++T
Subjt:  LIGLYVLT

AT5G60040.2 nuclear RNA polymerase C1

2.1e-28

28.57

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Query:  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDV
        PE +++  + V P  +RP + I G +   +D+    +++I  N +L  +L+   S+P  + +     VQ  V   +++ +RG Q   + H          
Subjt:  PEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRG-QPMRDGHNKVYKSFSDV

Query:  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN-----------IGVAKSKIREKEP
        ++GK GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  +  +  G  +   A N           +G  + +I ++  
Subjt:  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELFQTFLIRGLIRQHFASN-----------IGVAKSKIREKEP

Query:  IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM
        I   + + + +G  VL NR P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM    NL +   G+ +   TQD 
Subjt:  IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDM

Query:  LIGLYVLT
        L   +++T
Subjt:  LIGLYVLT

ATCG00180.1 DNA-directed RNA polymerase family protein

0.0e+00

88.83

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Query:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR
        MIDRYKHQQLRIGLVSPQQISAWA K +PNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGD+KED KFCEQCGVEFVDSRIR
Subjt:  MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIR

Query:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
        RYQMGYIKL CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCD                  FSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ
Subjt:  RYQMGYIKLACPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQ

Query:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
        GFD FRNREISTGAGAIREQLADLDLR+II+ SLVEWK+LGEEGP G             FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI
Subjt:  GFDTFRNREISTGAGAIREQLADLDLRLIIDYSLVEWKELGEEGPAG-------------FLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQI

Query:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
        +GGKLMSSDINELYRRVIYRNNTL DLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS
Subjt:  DGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRS

Query:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV
        VIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IREK+PIVWEILQEVMQGHPVLLNRAPTLHRLGIQ+FQPILV+GR ICLHPLV
Subjt:  VIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLV

Query:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIY--NNKYTKEPFFC
        CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSG RRGICANRYNP NRKN +NE+IY  N KYTKEPFFC
Subjt:  CKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRYNPGNRKNNKNEKIY--NNKYTKEPFFC

Query:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT
        NSYDAIGAYRQK+INLDSPLWLRW+LDQRVIASRE PIEVHYES G +HEIY  YLIV+S+KKE FCIYI+TTVGHIS YREIEEAIQGF +ACSY T
Subjt:  NSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVGHISLYREIEEAIQGFCRACSYGT

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGATTGATCGGTATAAACATCAACAACTCCGAATTGGATTAGTTTCTCCTCAACAAATAAGTGCTTGGGCCAATAAAACCCTACCTAATGGCGAGATAGTTGGAGAGGT
AACAAAACCCTATACTTTTCATTACAAAACCAATAAACCTGAAAAAGATGGATTATTTTGTGAAAGAATTTTTGGGCCTATAAAAAGCGGGATTTGTGCTTGTGGAAATT
ATCGAGTAATCGGAGATAAAAAAGAAGATTCGAAATTTTGTGAACAATGCGGAGTCGAATTTGTTGATTCTCGGATACGACGATATCAAATGGGCTATATTAAACTGGCA
TGCCCAGTAACCCATGTGTGGTATTTGAAACGTCTTCCTAGTTATATCGCGAATCTTTTAGATAAACCTCTTAAAGAATTAGAAGGCTTAGTATATTGCGATAAACTTTC
ACGTCCGATTTTGAAAGGGGGAGATCCTATAGTATCCTATCCAAATTTTTCGTTTGCTAGGCCCATAGCTAAAAAACCTACTTTCTTACGATTACGGGGTTCATTCGAAT
ATGAAATCCAATCCTGGAAATACAGCATCCCACTTTTTTTTACTACCCAAGGCTTCGATACATTTAGAAATCGAGAAATTTCTACCGGAGCAGGTGCTATACGAGAACAA
TTAGCCGATCTGGATTTGCGACTTATTATAGATTATTCGTTGGTAGAATGGAAAGAATTAGGGGAAGAAGGACCCGCGGGATTTTTGGTTAGACGTATGGAATTAGCTAA
GCATTTTATTCGAACAAATATAGAACCCGAATGGATGGTTTTATGTCTATTACCAGTTCTTCCTCCCGAGTTGAGACCAATCATTCAGATAGATGGGGGTAAACTAATGA
GCTCGGATATTAATGAACTCTATAGAAGAGTTATCTATCGGAACAATACTCTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAG
AAATTGGTACAAGAAGCCGTGGATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAAGTTTACAAGTCGTTTTCCGATGTAATTGAAGG
CAAAGAGGGAAGATTTCGTGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCATTACATCGATGTGGATTGCCTC
GCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCGAACATAGGCGTTGCTAAGAGTAAAATTAGGGAAAAAGAACCC
ATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGA
CGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAGGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAGGCTCAAGCGGAGG
CGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGGCTCTATGTATTAACGAGCGGG
AATCGACGAGGTATTTGTGCAAATCGGTATAATCCAGGTAATCGCAAAAATAATAAAAATGAAAAAATTTACAATAATAAATATACGAAAGAACCCTTTTTTTGTAATTC
CTATGATGCAATTGGAGCTTATCGCCAGAAAAGAATCAATTTAGATAGTCCGTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATCG
AAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTCCTATCTAATAGTAAAAAGTATAAAAAAAGAAATTTTTTGTATATACATTCAAACCACTGTTGGT
CATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGTTCATATGGTACCTAA

mRNA sequence

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Protein sequence

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MIDRYKHQQLRIGLVSPQQISAWANKTLPNGEIVGEVTKPYTFHYKTNKPEKDGLFCERIFGPIKSGICACGNYRVIGDKKEDSKFCEQCGVEFVDSRIRRYQMGYIKLA
CPVTHVWYLKRLPSYIANLLDKPLKELEGLVYCDKLSRPILKGGDPIVSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIREQ
LADLDLRLIIDYSLVEWKELGEEGPAGFLVRRMELAKHFIRTNIEPEWMVLCLLPVLPPELRPIIQIDGGKLMSSDINELYRRVIYRNNTLIDLLTTSRSTPGELVMCQE
KLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEP
IVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVDGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSG
NRRGICANRYNPGNRKNNKNEKIYNNKYTKEPFFCNSYDAIGAYRQKRINLDSPLWLRWRLDQRVIASREAPIEVHYESLGTHHEIYGSYLIVKSIKKEIFCIYIQTTVG
HISLYREIEEAIQGFCRACSYGT

Sed0025165 (gene) of Chayote v1 genome