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Sed0025241 (gene) of Chayote v1 genome

Gene IDSed0025241
OrganismSechium edule (Chayote v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Genome locationLG01:23005712..23006173
RNA-Seq ExpressionSed0025241
SyntenySed0025241
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022151683.1 uncharacterized protein LOC111019598 [Momordica charantia]4.2e-1641.73Show/hide
Query:  TLPNVPNSAYTQRPPGAVPILSGGVPVGSPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLC------PEQTITILPSEEEPEGLIM
        T+ N+P    T  PP  V     G    SP    +LNQ TSIK+DR NFLLWQN+ LPILR +KL  +L G   C      P  T T +      +    
Subjt:  TLPNVPNSAYTQRPPGAVPILSGGVPVGSPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLC------PEQTITILPSEEEPEGLIM

Query:  HNPEYDIWVQADQLLLGWFYNSMTVEI
         NP Y+ W+  D+LLLGW YNSM  ++
Subjt:  HNPEYDIWVQADQLLLGWFYNSMTVEI

XP_022842004.1 uncharacterized protein LOC111365701 [Olea europaea var. sylvestris]1.8e-1447.25Show/hide
Query:  FATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTITILPSEEEPEGL-IMHNPEYDIWVQADQLLLGWFYNSMTVEI
        F   L Q  S+KLD+NNFLLW+N+ LPI+R   L GH+ G+ LCP + I+   + E    + +  NP+Y  W+  DQLL+GW Y+SMT EI
Subjt:  FATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTITILPSEEEPEGL-IMHNPEYDIWVQADQLLLGWFYNSMTVEI

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]1.4e-1447.37Show/hide
Query:  SPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTI--TILPSEEEPEGLIMHNPEYDIWVQADQLLLGWFYNSMTVEI
        +P    ILNQ  S+KLDR N+LLWQ + LPIL+ +KL GHL   N CP + I      +          NP++D WV  D LLLGW YNSMT E+
Subjt:  SPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTI--TILPSEEEPEGLIMHNPEYDIWVQADQLLLGWFYNSMTVEI

XP_038882253.1 uncharacterized protein LOC120073479 [Benincasa hispida]6.1e-1543.52Show/hide
Query:  SPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTITILPSEEEP--------EGLIMH------NPEYDIWVQADQLLLGWFY
        +P    +LNQ TSIKL+R  F+LW+ ++LPIL+ ++L GHL  + +CP   I    S  +P        EG +        NP+Y+ WV A+QLLLGW Y
Subjt:  SPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTITILPSEEEP--------EGLIMH------NPEYDIWVQADQLLLGWFY

Query:  NSMTVEIV
        NSMT E+V
Subjt:  NSMTVEIV

XP_038887015.1 uncharacterized protein LOC120077182 [Benincasa hispida]2.3e-1443.93Show/hide
Query:  SPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLC-PEQTITILPSEEEPE-------------GLIMHNPEYDIWVQADQLLLGWFY
        +P    +LNQ T+ KL+R  F+LW+ + LPILR +KL  HL G+ +C P  T++ +PS E  +             G    NP Y++WV ADQLLLGW Y
Subjt:  SPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLC-PEQTITILPSEEEPE-------------GLIMHNPEYDIWVQADQLLLGWFY

Query:  NSMTVEI
        NSMT E+
Subjt:  NSMTVEI

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911165.5e-1438.93Show/hide
Query:  YTQRPPGAVPILSGGVPVGS---PTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTITIL-------------PSEE---EPE
        Y      A PI     P  S   P    ILNQ T+IKLDR N+LLW+ + LPIL+ +KL  HL G + C  + I +              PS+E      
Subjt:  YTQRPPGAVPILSGGVPVGS---PTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTITIL-------------PSEE---EPE

Query:  GLIMHNPEYDIWVQADQLLLGWFYNSMTVEI
         ++  NP+Y+ W+  D LLLGW YNSMT E+
Subjt:  GLIMHNPEYDIWVQADQLLLGWFYNSMTVEI

A0A5A7V1E0 Reverse transcriptase, RNA-dependent DNA polymerase5.5e-1441.28Show/hide
Query:  SPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTIT--ILPSEEEPEGLI--------------MHNPEYDIWVQADQLLLGW
        +P    +LNQ +S+KLDR N+LLW+ + LPI++ +K  GHL G N CP + IT  I  S+ E +G                  NP++D W+ +  LLLGW
Subjt:  SPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTIT--ILPSEEEPEGLI--------------MHNPEYDIWVQADQLLLGW

Query:  FYNSMTVEI
         YNSMT E+
Subjt:  FYNSMTVEI

A0A5A7VPY0 Uncharacterized protein7.2e-1440.32Show/hide
Query:  AVPILSGGVPVGS---PTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTITIL-------------PSEE---EPEGLIMHNP
        A PI     P  S   P    ILNQ T+IKLDR N+LLW+ + LPIL+ +KL  HL G + C  + I +              PS+E       ++  NP
Subjt:  AVPILSGGVPVGS---PTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTITIL-------------PSEE---EPEGLIMHNP

Query:  EYDIWVQADQLLLGWFYNSMTVEI
        +Y+ W+  D LLLGW YNSMT E+
Subjt:  EYDIWVQADQLLLGWFYNSMTVEI

A0A5D3BVJ1 Uncharacterized protein5.5e-1441.28Show/hide
Query:  SPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTIT--ILPSEEEPEGLI--------------MHNPEYDIWVQADQLLLGW
        +P    +LNQ +S+KLDR N+LLW+ + LPI++ +K  GHL G N CP + IT  I  S+ E +G                  NP++D W+ +  LLLGW
Subjt:  SPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTIT--ILPSEEEPEGLI--------------MHNPEYDIWVQADQLLLGW

Query:  FYNSMTVEI
         YNSMT E+
Subjt:  FYNSMTVEI

A0A6J1DCW4 uncharacterized protein LOC1110195982.0e-1641.73Show/hide
Query:  TLPNVPNSAYTQRPPGAVPILSGGVPVGSPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLC------PEQTITILPSEEEPEGLIM
        T+ N+P    T  PP  V     G    SP    +LNQ TSIK+DR NFLLWQN+ LPILR +KL  +L G   C      P  T T +      +    
Subjt:  TLPNVPNSAYTQRPPGAVPILSGGVPVGSPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLC------PEQTITILPSEEEPEGLIM

Query:  HNPEYDIWVQADQLLLGWFYNSMTVEI
         NP Y+ W+  D+LLLGW YNSM  ++
Subjt:  HNPEYDIWVQADQLLLGWFYNSMTVEI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAGCGCCGACCAATCTGCTTCCTCACGAACAAAGCTCTCTGGGCAGCCTGAATCTGTGGTGACTCCCCCACCTGCTGCTAGTTCGACACTCCCAAATGTGCCCAA
CTCCGCGTATACGCAGAGACCTCCAGGTGCTGTTCCTATTCTCTCTGGAGGAGTGCCTGTAGGGAGTCCAACCTTTGCAACCATCTTAAATCAAACCACCTCTATCAAGC
TCGATAGGAACAACTTTCTCCTGTGGCAGAATATAACTCTTCCCATTCTCAGGTATTTCAAATTAATGGGTCACCTAGATGGATCAAACCTATGTCCCGAACAAACGATC
ACTATACTGCCCTCGGAAGAAGAACCCGAAGGATTGATTATGCACAACCCTGAATATGACATCTGGGTTCAGGCAGATCAACTTCTCTTAGGCTGGTTTTACAACTCTAT
GACTGTGGAGATTGTTACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAGCGCCGACCAATCTGCTTCCTCACGAACAAAGCTCTCTGGGCAGCCTGAATCTGTGGTGACTCCCCCACCTGCTGCTAGTTCGACACTCCCAAATGTGCCCAA
CTCCGCGTATACGCAGAGACCTCCAGGTGCTGTTCCTATTCTCTCTGGAGGAGTGCCTGTAGGGAGTCCAACCTTTGCAACCATCTTAAATCAAACCACCTCTATCAAGC
TCGATAGGAACAACTTTCTCCTGTGGCAGAATATAACTCTTCCCATTCTCAGGTATTTCAAATTAATGGGTCACCTAGATGGATCAAACCTATGTCCCGAACAAACGATC
ACTATACTGCCCTCGGAAGAAGAACCCGAAGGATTGATTATGCACAACCCTGAATATGACATCTGGGTTCAGGCAGATCAACTTCTCTTAGGCTGGTTTTACAACTCTAT
GACTGTGGAGATTGTTACCTAA
Protein sequenceShow/hide protein sequence
MASADQSASSRTKLSGQPESVVTPPPAASSTLPNVPNSAYTQRPPGAVPILSGGVPVGSPTFATILNQTTSIKLDRNNFLLWQNITLPILRYFKLMGHLDGSNLCPEQTI
TILPSEEEPEGLIMHNPEYDIWVQADQLLLGWFYNSMTVEIVT