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Sed0025286 (gene) of Chayote v1 genome

Gene IDSed0025286
OrganismSechium edule (Chayote v1)
DescriptionSANT domain-containing protein
Genome locationLG01:2302818..2303433
RNA-Seq ExpressionSed0025286
SyntenySed0025286
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605078.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]8.6e-3379.17Show/hide
Query:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASAT---TNGNINDQEQR
        MAS+ SSH SSSW+P QNKAFERALA+FDKDTPDRWLNVAK VGDKTVDEVK+HFELLVEDVKHIESG +PFPNYTSS+S+    +  NINDQE+R
Subjt:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASAT---TNGNINDQEQR

KAG7035087.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma]2.3e-3380.21Show/hide
Query:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASA---TTNGNINDQEQR
        MAS+ SSH SSSW+P QNKAFERALA+FDKDTPDRWLNVAK VGDKTVDEVK+HFELLVEDVKHIESG +PFPNYTSS+S+   T+  NINDQE+R
Subjt:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASA---TTNGNINDQEQR

XP_022944318.1 protein RADIALIS-like 2 [Cucurbita moschata]1.5e-3281.25Show/hide
Query:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLVEDVKHIESGRIPFPNY--TSSASATTNGNINDQEQR
        MAS+ SSH SSSWTPKQNKAFERALA+FDKDTPDRWLNVAK V G KT DEVK HF+LLVEDVKHIESG +PFPNY  T+SAS T+N NINDQEQR
Subjt:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLVEDVKHIESGRIPFPNY--TSSASATTNGNINDQEQR

XP_022946976.1 transcription factor RADIALIS-like [Cucurbita moschata]3.9e-3379.17Show/hide
Query:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASA---TTNGNINDQEQR
        MAS+ SSHDS+SW+P QNKAFE ALA+FDKDTPDRWLNVAK VGDKTVDEVK+HFELLVEDVKHIESG +PFPNYTSS+S+   T++ NIN QEQR
Subjt:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASA---TTNGNINDQEQR

XP_023515007.1 transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]6.0e-3481.91Show/hide
Query:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYT-SSASATTNGNINDQEQR
        MAS+ SSHDS+SW+P QNKAFERALA+FDKDTPDRWLNVAK VGDKT DEVK+HFELLVEDVKHIESG +PFPNYT SSA  T++ NINDQEQR
Subjt:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYT-SSASATTNGNINDQEQR

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1421.9e-3077.89Show/hide
Query:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASA--TTNGNINDQEQR
        MAS+SS  SSSWTP QNKAFERALA+FDKDTPDRWLNVAK V G KT DEVK+HF+ LVEDVKHIESGR+PFP YTSS+S+  T+N NI DQEQR
Subjt:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASA--TTNGNINDQEQR

A0A6J1CYR5 protein RADIALIS-like 29.3e-3375.27Show/hide
Query:  MASLSSHDSS-SWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        MA++SS DSS SWTP QNKAFERALA+FDKDTPDRW NVA  VG KT DEVK+HF+LLVEDVKHIESGRIPFPNYT++ + ++NGN+ND+E+R
Subjt:  MASLSSHDSS-SWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

A0A6J1FXX9 protein RADIALIS-like 27.1e-3381.25Show/hide
Query:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLVEDVKHIESGRIPFPNY--TSSASATTNGNINDQEQR
        MAS+ SSH SSSWTPKQNKAFERALA+FDKDTPDRWLNVAK V G KT DEVK HF+LLVEDVKHIESG +PFPNY  T+SAS T+N NINDQEQR
Subjt:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLVEDVKHIESGRIPFPNY--TSSASATTNGNINDQEQR

A0A6J1G543 transcription factor RADIALIS-like1.9e-3379.17Show/hide
Query:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASA---TTNGNINDQEQR
        MAS+ SSHDS+SW+P QNKAFE ALA+FDKDTPDRWLNVAK VGDKTVDEVK+HFELLVEDVKHIESG +PFPNYTSS+S+   T++ NIN QEQR
Subjt:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASA---TTNGNINDQEQR

A0A6J1JBS7 protein RADIALIS-like 26.0e-3279.17Show/hide
Query:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASA--TTNGNINDQEQR
        MAS+ SSH SSSWTPK+NKAFERALA+FDKDTPDRWLNVAK V G KT DEVK HF+LLVEDVKHIE G +PFPNY+S+ASA  T+N NINDQEQR
Subjt:  MASL-SSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVV-GDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASA--TTNGNINDQEQR

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.8e-2660.44Show/hide
Query:  ASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        +S+SS  S SWT KQNKAFE+ALA +D+DTP+RW NVAKVVG KT +EVK+H+ELLV+D+  IE+G +PFPNY +S    TNG ++ +E+R
Subjt:  ASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

Q1A173 Protein RADIALIS-like 61.1e-2258.7Show/hide
Query:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        MAS S    S WT  QNK FERALA++DKDTPDRW NVAK VG KTV+EVK+H+++LVED+ +IE+GR+P PNY +  S   + +IND + R
Subjt:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

Q58FS3 Transcription factor RADIALIS1.3e-2360.49Show/hide
Query:  WTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        W+ K+NKAFERALA++DKDTPDRW NVA+ V  +T +EVK+H+E+LVED+K+IESG++PFPNY      TT GN+   E+R
Subjt:  WTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

Q8GW75 Protein RADIALIS-like 55.5e-2254.35Show/hide
Query:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        MAS S   SSSWT KQNK FERALA++DKDTPDRW NVAK VG K+ +EVK+H+++LVED+ +IE   +P P Y +    + +  I+D + R
Subjt:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

Q9SIJ5 Protein RADIALIS-like 22.6e-2454.44Show/hide
Query:  SLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        S+SS+ S SWT KQNKAFERALA++D+DTPDRW NVA+ VG KT +E K+ ++LLV D++ IE+G +PFP+Y ++   +  G + D+E+R
Subjt:  SLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 53.9e-2354.35Show/hide
Query:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        MAS S   SSSWT KQNK FERALA++DKDTPDRW NVAK VG K+ +EVK+H+++LVED+ +IE   +P P Y +    + +  I+D + R
Subjt:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

AT1G75250.1 RAD-like 67.8e-2458.7Show/hide
Query:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        MAS S    S WT  QNK FERALA++DKDTPDRW NVAK VG KTV+EVK+H+++LVED+ +IE+GR+P PNY +  S   + +IND + R
Subjt:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

AT1G75250.2 RAD-like 67.8e-2458.7Show/hide
Query:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        MAS S    S WT  QNK FERALA++DKDTPDRW NVAK VG KTV+EVK+H+++LVED+ +IE+GR+P PNY +  S   + +IND + R
Subjt:  MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

AT2G21650.1 Homeodomain-like superfamily protein1.9e-2554.44Show/hide
Query:  SLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        S+SS+ S SWT KQNKAFERALA++D+DTPDRW NVA+ VG KT +E K+ ++LLV D++ IE+G +PFP+Y ++   +  G + D+E+R
Subjt:  SLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR

AT4G39250.1 RAD-like 12.0e-2760.44Show/hide
Query:  ASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR
        +S+SS  S SWT KQNKAFE+ALA +D+DTP+RW NVAKVVG KT +EVK+H+ELLV+D+  IE+G +PFPNY +S    TNG ++ +E+R
Subjt:  ASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCCTTGTCCTCCCATGACTCTAGCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAAAGGGCCTTGGCTATCTTTGACAAGGACACCCCCGATCGTTGGCTCAA
TGTCGCCAAGGTCGTCGGTGACAAGACTGTCGATGAAGTCAAACAACATTTCGAGCTTCTTGTCGAGGATGTCAAACACATTGAATCTGGTCGCATCCCCTTCCCTAATT
ACACTTCCTCCGCCTCGGCCACCACCAATGGCAACATCAATGACCAAGAACAAAGGTAG
mRNA sequenceShow/hide mRNA sequence
TGAGAGGGAAGATTAGGAAAGGAGAGAGATGGTGATTCTTTTTACACTTACAATTATATTTGGTATTTGTTGGTGTGCATCTTTGTCTTCTCTCCCACTTCCATTTTGTG
GTTCCTAAATAGACAAATCATTCAAAATTCTCTCTTTTCCCCTTTTCCCTTTATTATATATCTCCTTCTCCAATAACTCTTCTTGCTCACTTACATCCATGGCTTCCTTG
TCCTCCCATGACTCTAGCTCTTGGACTCCCAAGCAAAACAAAGCCTTTGAAAGGGCCTTGGCTATCTTTGACAAGGACACCCCCGATCGTTGGCTCAATGTCGCCAAGGT
CGTCGGTGACAAGACTGTCGATGAAGTCAAACAACATTTCGAGCTTCTTGTCGAGGATGTCAAACACATTGAATCTGGTCGCATCCCCTTCCCTAATTACACTTCCTCCG
CCTCGGCCACCACCAATGGCAACATCAATGACCAAGAACAAAGGTAGCTCTTTATAATGTACTTTTTAAACTTTCCTCTATCATTTTTCTACAATGTATTATTTCTAAAG
TTTGAATGAAAATCAAACTTTCAATATTAGAGAAAAAAAAAATGAATGTTGTTGTTATCATCCCAC
Protein sequenceShow/hide protein sequence
MASLSSHDSSSWTPKQNKAFERALAIFDKDTPDRWLNVAKVVGDKTVDEVKQHFELLVEDVKHIESGRIPFPNYTSSASATTNGNINDQEQR